Wall clock time and date at job start Mon Mar 30 2020 02:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00001 * 2 1 4 4 H 1.48503 * 109.46900 * 239.99705 * 3 2 1 5 5 H 1.48497 * 109.47221 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47319 * 120.00186 * 3 2 1 7 7 C 1.37879 * 119.99722 * 179.97438 * 2 1 3 8 8 C 1.51267 * 120.85036 * 0.02562 * 7 2 1 9 9 C 1.53236 * 108.53325 * 231.32227 * 8 7 2 10 10 C 1.52955 * 109.40289 * 305.37023 * 9 8 7 11 11 H 1.09003 * 109.41439 * 303.49240 * 10 9 8 12 12 N 1.46498 * 109.41143 * 183.70673 * 10 9 8 13 13 C 1.38983 * 120.00008 * 154.99911 * 12 10 9 14 14 C 1.39492 * 119.63516 * 359.72784 * 13 12 10 15 15 C 1.38251 * 119.28929 * 179.74758 * 14 13 12 16 16 C 1.38840 * 118.57993 * 0.51521 * 15 14 13 17 17 C 1.39102 * 119.22987 * 359.74637 * 16 15 14 18 18 C 1.48140 * 119.67886 * 180.02562 * 17 16 15 19 19 N 1.34783 * 119.99924 * 179.97438 * 18 17 16 20 20 O 1.21518 * 120.00173 * 359.97438 * 18 17 16 21 21 N 1.32051 * 119.63891 * 179.97438 * 13 12 10 22 22 C 1.52958 * 109.81879 * 63.59902 * 10 9 8 23 23 C 1.51264 * 120.84977 * 179.97438 * 7 2 1 24 24 H 0.96999 * 119.99814 * 359.97438 * 1 2 3 25 25 H 1.08991 * 109.63053 * 111.60583 * 8 7 2 26 26 H 1.09003 * 109.62740 * 351.03061 * 8 7 2 27 27 H 1.09000 * 109.47925 * 65.35303 * 9 8 7 28 28 H 1.08998 * 109.48168 * 185.37562 * 9 8 7 29 29 H 0.97005 * 120.00159 * 334.99833 * 12 10 9 30 30 H 1.08003 * 120.35845 * 359.97438 * 14 13 12 31 31 H 1.08001 * 120.71632 * 180.24212 * 15 14 13 32 32 H 1.08005 * 120.38450 * 179.72875 * 16 15 14 33 33 H 0.96993 * 119.99644 * 359.97438 * 19 18 17 34 34 H 0.96992 * 120.00193 * 180.02562 * 19 18 17 35 35 H 1.09000 * 109.48176 * 56.37933 * 22 10 9 36 36 H 1.08998 * 109.48079 * 176.42178 * 22 10 9 37 37 H 1.09004 * 109.62227 * 8.96406 * 23 7 2 38 38 H 1.09004 * 109.78642 * 248.48608 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 6 1.2676 -2.5152 0.0005 9 6 1.8229 -3.3826 1.1352 10 6 3.3399 -3.5070 0.9840 11 1 3.5738 -3.9124 -0.0005 12 7 3.8598 -4.4076 2.0159 13 6 5.0534 -5.0883 1.8070 14 6 5.7471 -4.9127 0.6097 15 6 6.9364 -5.5893 0.4116 16 6 7.3953 -6.4333 1.4139 17 6 6.6519 -6.5677 2.5820 18 6 7.1326 -7.4651 3.6581 19 7 6.4177 -7.5998 4.7928 20 8 8.1714 -8.0799 3.5179 21 7 5.5157 -5.8978 2.7422 22 6 3.9907 -2.1311 1.1350 23 6 3.5170 -1.2166 0.0000 24 1 -0.4850 0.8401 0.0004 25 1 1.4198 -3.0193 -0.9537 26 1 0.2036 -2.3409 0.1602 27 1 1.5898 -2.9196 2.0941 28 1 1.3704 -4.3732 1.0903 29 1 3.3710 -4.5288 2.8450 30 1 5.3613 -4.2525 -0.1530 31 1 7.4943 -5.4674 -0.5051 32 1 8.3185 -6.9794 1.2880 33 1 5.5888 -7.1087 4.9048 34 1 6.7326 -8.1870 5.4976 35 1 3.7064 -1.6977 2.0939 36 1 5.0748 -2.2348 1.0898 37 1 3.8982 -0.2079 0.1591 38 1 3.8800 -1.5988 -0.9541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157055219.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:41 Heat of formation + Delta-G solvation = -16.530884 kcal Electronic energy + Delta-G solvation = -20768.847910 eV Core-core repulsion = 17610.116965 eV Total energy + Delta-G solvation = -3158.730945 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.54542 -39.01816 -37.46734 -34.43352 -33.91086 -32.37525 -31.77431 -30.05594 -29.37944 -26.95894 -24.85630 -22.94020 -21.99353 -21.58265 -20.62794 -19.51892 -18.19878 -17.37895 -16.86477 -16.03521 -15.80170 -15.37999 -15.12101 -14.55450 -14.40239 -14.17892 -13.91013 -13.30044 -13.12320 -12.92139 -12.45976 -12.24799 -11.88659 -11.72366 -11.20426 -11.00757 -10.79820 -10.55100 -10.35216 -10.28857 -10.05376 -9.86353 -9.81715 -9.57248 -9.50204 -9.09136 -8.81158 -8.57536 -7.50135 -6.20582 -4.12627 0.77789 1.50920 2.78054 3.18527 3.22877 3.29857 3.30262 3.47558 4.02406 4.29837 4.46536 4.86370 5.06272 5.13290 5.24921 5.36932 5.49721 5.61609 5.69864 5.95617 5.99471 6.29529 6.32190 6.41225 6.47740 6.57449 6.60868 6.70971 6.74996 6.87668 6.92581 7.12101 7.26274 7.31001 7.53067 7.58871 7.66913 7.80473 8.07005 8.23718 8.25821 8.84999 9.43806 10.88912 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.035468 B = 0.003788 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.263246 B = 7389.083004 C = 7636.043015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.078 3.922 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.494 4.494 8 C 0.014 3.986 9 C -0.113 4.113 10 C 0.161 3.839 11 H 0.072 0.928 12 N -0.713 5.713 13 C 0.412 3.588 14 C -0.209 4.209 15 C -0.043 4.043 16 C -0.181 4.181 17 C 0.116 3.884 18 C 0.581 3.419 19 N -0.837 5.837 20 O -0.542 6.542 21 N -0.534 5.534 22 C -0.120 4.120 23 C -0.008 4.008 24 H 0.266 0.734 25 H 0.006 0.994 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.037 0.963 29 H 0.400 0.600 30 H 0.142 0.858 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.413 0.587 34 H 0.402 0.598 35 H 0.056 0.944 36 H 0.036 0.964 37 H 0.026 0.974 38 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.209 -10.034 4.608 14.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.513 4.513 8 C -0.024 4.024 9 C -0.152 4.152 10 C 0.058 3.942 11 H 0.090 0.910 12 N -0.343 5.343 13 C 0.172 3.828 14 C -0.235 4.235 15 C -0.068 4.068 16 C -0.206 4.206 17 C -0.022 4.022 18 C 0.365 3.635 19 N -0.400 5.400 20 O -0.418 6.418 21 N -0.256 5.256 22 C -0.159 4.159 23 C -0.047 4.047 24 H 0.076 0.924 25 H 0.025 0.975 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.235 0.765 30 H 0.160 0.840 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.243 0.757 34 H 0.232 0.768 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 9.169 -10.211 4.973 14.597 hybrid contribution 0.364 1.103 0.017 1.161 sum 9.533 -9.108 4.990 14.097 Atomic orbital electron populations 1.69813 1.06177 1.27240 1.49273 1.24839 0.94727 0.98608 0.94325 0.86657 0.79432 0.82975 0.79026 1.19946 1.21794 1.19984 1.19993 0.89220 0.91512 1.50543 1.19339 0.98868 0.92681 0.91524 1.21923 0.91862 0.98843 1.02575 1.21141 0.95191 0.88522 0.89375 0.90956 1.45172 1.20837 1.46483 1.21776 1.18347 0.87238 0.88291 0.88905 1.21823 0.97601 1.05372 0.98704 1.21334 0.94333 0.92853 0.98323 1.21689 1.02392 1.02430 0.94089 1.20511 0.91445 0.96118 0.94140 1.17987 0.83082 0.80474 0.81986 1.43661 1.28123 1.49487 1.18714 1.90804 1.23648 1.47139 1.80249 1.66945 1.14842 1.11464 1.32334 1.22051 0.97012 0.95460 1.01414 1.19605 0.96748 0.94712 0.93594 0.92390 0.97531 0.91981 0.92530 0.94384 0.76471 0.84034 0.84411 0.84273 0.75710 0.76787 0.92546 0.94567 0.95505 0.96251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.43 12.73 55.43 0.71 -23.73 16 2 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.89 20.39 26.80 -169.99 -4.56 15.84 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.49 -12.10 5.51 -98.93 -0.55 -12.65 16 8 C 0.01 0.31 5.97 -27.48 -0.16 0.15 16 9 C -0.11 -2.13 5.40 -26.63 -0.14 -2.28 16 10 C 0.16 2.73 2.04 -67.98 -0.14 2.59 16 11 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 12 N -0.71 -10.61 5.24 -53.97 -0.28 -10.89 16 13 C 0.41 6.08 7.62 -155.20 -1.18 4.90 16 14 C -0.21 -2.87 8.80 -39.11 -0.34 -3.22 16 15 C -0.04 -0.51 10.16 -39.35 -0.40 -0.91 16 16 C -0.18 -2.34 9.63 -39.04 -0.38 -2.72 16 17 C 0.12 1.62 6.74 -83.03 -0.56 1.06 16 18 C 0.58 7.73 8.08 -12.19 -0.10 7.63 16 19 N -0.84 -8.01 8.86 30.60 0.27 -7.74 16 20 O -0.54 -8.59 17.15 5.35 0.09 -8.50 16 21 N -0.53 -7.58 9.57 -9.00 -0.09 -7.67 16 22 C -0.12 -2.22 5.41 -26.62 -0.14 -2.37 16 23 C -0.01 -0.18 5.59 -27.47 -0.15 -0.33 16 24 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 26 H 0.06 1.58 7.07 -51.93 -0.37 1.21 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.40 5.57 8.72 -40.82 -0.36 5.21 16 30 H 0.14 1.91 6.12 -52.48 -0.32 1.58 16 31 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.14 1.66 7.63 -52.48 -0.40 1.26 16 33 H 0.41 3.57 8.16 -40.82 -0.33 3.24 16 34 H 0.40 2.95 8.93 -40.82 -0.36 2.59 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 37 H 0.03 0.58 5.17 -51.93 -0.27 0.31 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 311.10 15.07 4.69 4.69 Total: -1.00 -28.49 311.10 -8.33 -36.82 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -4.82 Total: 7.39 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -4.35 Total: -6.21 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: 0.61 Total: -50.03 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.56 Total: 15.84 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.49 -8.33 -36.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055219.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.287 kcal (2) G-P(sol) polarization free energy of solvation -28.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds