Wall clock time and date at job start Mon Mar 30 2020 02:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00001 * 2 1 4 4 H 1.48503 * 109.46900 * 239.99705 * 3 2 1 5 5 H 1.48497 * 109.47221 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47319 * 120.00186 * 3 2 1 7 7 C 1.37879 * 119.99722 * 179.97438 * 2 1 3 8 8 C 1.51267 * 120.85036 * 0.02562 * 7 2 1 9 9 C 1.53236 * 108.53325 * 231.32227 * 8 7 2 10 10 C 1.52955 * 109.40289 * 305.37023 * 9 8 7 11 11 H 1.09003 * 109.41439 * 303.49240 * 10 9 8 12 12 N 1.46498 * 109.41143 * 183.70673 * 10 9 8 13 13 C 1.38983 * 120.00008 * 154.99911 * 12 10 9 14 14 C 1.39492 * 119.63516 * 359.72784 * 13 12 10 15 15 C 1.38251 * 119.28929 * 179.74758 * 14 13 12 16 16 C 1.38840 * 118.57993 * 0.51521 * 15 14 13 17 17 C 1.39102 * 119.22987 * 359.74637 * 16 15 14 18 18 C 1.48140 * 119.67886 * 180.02562 * 17 16 15 19 19 N 1.34783 * 119.99924 * 179.97438 * 18 17 16 20 20 O 1.21518 * 120.00173 * 359.97438 * 18 17 16 21 21 N 1.32051 * 119.63891 * 179.97438 * 13 12 10 22 22 C 1.52958 * 109.81879 * 63.59902 * 10 9 8 23 23 C 1.51264 * 120.84977 * 179.97438 * 7 2 1 24 24 H 0.96999 * 119.99814 * 359.97438 * 1 2 3 25 25 H 1.08991 * 109.63053 * 111.60583 * 8 7 2 26 26 H 1.09003 * 109.62740 * 351.03061 * 8 7 2 27 27 H 1.09000 * 109.47925 * 65.35303 * 9 8 7 28 28 H 1.08998 * 109.48168 * 185.37562 * 9 8 7 29 29 H 0.97005 * 120.00159 * 334.99833 * 12 10 9 30 30 H 1.08003 * 120.35845 * 359.97438 * 14 13 12 31 31 H 1.08001 * 120.71632 * 180.24212 * 15 14 13 32 32 H 1.08005 * 120.38450 * 179.72875 * 16 15 14 33 33 H 0.96993 * 119.99644 * 359.97438 * 19 18 17 34 34 H 0.96992 * 120.00193 * 180.02562 * 19 18 17 35 35 H 1.09000 * 109.48176 * 56.37933 * 22 10 9 36 36 H 1.08998 * 109.48079 * 176.42178 * 22 10 9 37 37 H 1.09004 * 109.62227 * 8.96406 * 23 7 2 38 38 H 1.09004 * 109.78642 * 248.48608 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 6 1.2676 -2.5152 0.0005 9 6 1.8229 -3.3826 1.1352 10 6 3.3399 -3.5070 0.9840 11 1 3.5738 -3.9124 -0.0005 12 7 3.8598 -4.4076 2.0159 13 6 5.0534 -5.0883 1.8070 14 6 5.7471 -4.9127 0.6097 15 6 6.9364 -5.5893 0.4116 16 6 7.3953 -6.4333 1.4139 17 6 6.6519 -6.5677 2.5820 18 6 7.1326 -7.4651 3.6581 19 7 6.4177 -7.5998 4.7928 20 8 8.1714 -8.0799 3.5179 21 7 5.5157 -5.8978 2.7422 22 6 3.9907 -2.1311 1.1350 23 6 3.5170 -1.2166 0.0000 24 1 -0.4850 0.8401 0.0004 25 1 1.4198 -3.0193 -0.9537 26 1 0.2036 -2.3409 0.1602 27 1 1.5898 -2.9196 2.0941 28 1 1.3704 -4.3732 1.0903 29 1 3.3710 -4.5288 2.8450 30 1 5.3613 -4.2525 -0.1530 31 1 7.4943 -5.4674 -0.5051 32 1 8.3185 -6.9794 1.2880 33 1 5.5888 -7.1087 4.9048 34 1 6.7326 -8.1870 5.4976 35 1 3.7064 -1.6977 2.0939 36 1 5.0748 -2.2348 1.0898 37 1 3.8982 -0.2079 0.1591 38 1 3.8800 -1.5988 -0.9541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157055219.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:40 Heat of formation + Delta-G solvation = -36.220728 kcal Electronic energy + Delta-G solvation = -20769.701726 eV Core-core repulsion = 17610.116965 eV Total energy + Delta-G solvation = -3159.584761 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.58957 -40.11779 -38.87244 -35.89384 -34.85675 -33.77402 -33.06914 -31.60393 -30.73541 -28.49311 -25.89906 -24.31665 -23.33154 -23.13379 -21.84835 -20.96996 -19.19189 -18.55858 -18.03234 -17.48600 -16.85663 -16.56370 -16.40313 -16.16057 -15.62827 -15.26032 -15.15247 -14.80445 -14.46590 -14.12107 -14.06882 -13.90968 -13.40153 -12.95103 -12.75918 -12.70419 -12.50334 -11.97222 -11.83386 -11.64502 -11.62138 -11.21399 -10.88964 -10.77401 -10.66215 -10.54396 -10.53675 -10.48040 -8.64189 -8.16173 -6.09608 -0.24834 0.50114 1.40652 1.42762 1.49447 1.75944 2.08036 2.41587 2.50464 2.98281 3.13280 3.48939 3.93398 4.01810 4.15017 4.18402 4.26929 4.39373 4.49263 4.63296 4.73979 4.92410 4.98717 5.06706 5.09715 5.13155 5.25396 5.25947 5.33928 5.56769 5.61188 5.66665 5.77980 5.79204 5.86132 6.03237 6.32303 6.35135 6.67118 6.97699 7.06300 7.25225 7.48729 8.94650 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.035468 B = 0.003788 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.263246 B = 7389.083004 C = 7636.043015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.024 3.976 3 Si 0.939 3.061 4 H -0.265 1.265 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.498 4.498 8 C 0.010 3.990 9 C -0.102 4.102 10 C 0.177 3.823 11 H 0.079 0.921 12 N -0.712 5.712 13 C 0.396 3.604 14 C -0.218 4.218 15 C -0.032 4.032 16 C -0.182 4.182 17 C 0.100 3.900 18 C 0.578 3.422 19 N -0.817 5.817 20 O -0.573 6.573 21 N -0.535 5.535 22 C -0.112 4.112 23 C -0.012 4.012 24 H 0.262 0.738 25 H 0.007 0.993 26 H 0.028 0.972 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.404 0.596 30 H 0.146 0.854 31 H 0.171 0.829 32 H 0.148 0.852 33 H 0.419 0.581 34 H 0.414 0.586 35 H 0.043 0.957 36 H 0.056 0.944 37 H 0.024 0.976 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.268 -10.866 4.698 16.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.175 4.175 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.225 1.225 6 H -0.193 1.193 7 C -0.517 4.517 8 C -0.028 4.028 9 C -0.141 4.141 10 C 0.073 3.927 11 H 0.097 0.903 12 N -0.342 5.342 13 C 0.157 3.843 14 C -0.244 4.244 15 C -0.058 4.058 16 C -0.207 4.207 17 C -0.038 4.038 18 C 0.362 3.638 19 N -0.380 5.380 20 O -0.453 6.453 21 N -0.256 5.256 22 C -0.151 4.151 23 C -0.051 4.051 24 H 0.071 0.929 25 H 0.026 0.974 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.240 0.760 30 H 0.164 0.836 31 H 0.189 0.811 32 H 0.166 0.834 33 H 0.251 0.749 34 H 0.246 0.754 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.042 0.958 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 11.243 -11.065 5.100 16.579 hybrid contribution -0.245 1.256 -0.016 1.280 sum 10.997 -9.809 5.084 15.589 Atomic orbital electron populations 1.69953 1.07614 1.27452 1.52093 1.25555 0.95259 1.01595 0.95049 0.85868 0.78343 0.79778 0.79419 1.19047 1.22486 1.19305 1.20652 0.91245 0.91815 1.48038 1.19295 0.97090 0.93294 0.93159 1.21690 0.93548 0.98708 1.00148 1.20762 0.93400 0.88265 0.90311 0.90304 1.44828 1.21334 1.46583 1.21497 1.18486 0.87327 0.88810 0.89639 1.21983 0.98177 1.05813 0.98394 1.21684 0.93662 0.91335 0.99093 1.21934 1.02507 1.02269 0.93949 1.20733 0.91652 0.96500 0.94914 1.18012 0.82928 0.80259 0.82641 1.43532 1.27689 1.48865 1.17937 1.90789 1.25005 1.48509 1.80957 1.66883 1.14975 1.11426 1.32365 1.21919 0.98268 0.95547 0.99399 1.19646 0.94515 0.95534 0.95356 0.92887 0.97446 0.95376 0.93495 0.92605 0.75992 0.83629 0.81112 0.83442 0.74932 0.75367 0.93764 0.92543 0.95767 0.95048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.80 12.73 21.45 0.27 -52.53 16 2 C 0.02 1.25 5.46 84.65 0.46 1.71 16 3 Si 0.94 41.85 26.80 68.60 1.84 43.69 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.50 -24.30 5.51 -16.17 -0.09 -24.39 16 8 C 0.01 0.44 5.97 30.11 0.18 0.62 16 9 C -0.10 -3.74 5.40 30.66 0.17 -3.58 16 10 C 0.18 5.60 2.04 44.96 0.09 5.69 16 11 H 0.08 2.44 6.43 -2.39 -0.02 2.42 16 12 N -0.71 -19.52 5.24 -324.65 -1.70 -21.22 16 13 C 0.40 10.69 7.62 133.26 1.02 11.70 16 14 C -0.22 -5.29 8.80 22.58 0.20 -5.09 16 15 C -0.03 -0.66 10.16 22.42 0.23 -0.43 16 16 C -0.18 -4.22 9.63 22.62 0.22 -4.00 16 17 C 0.10 2.57 6.74 41.83 0.28 2.85 16 18 C 0.58 14.40 8.08 86.87 0.70 15.11 16 19 N -0.82 -14.08 8.86 -175.39 -1.55 -15.63 16 20 O -0.57 -17.43 17.15 -3.77 -0.06 -17.49 16 21 N -0.53 -14.00 9.57 -182.39 -1.75 -15.74 16 22 C -0.11 -3.89 5.41 30.67 0.17 -3.72 16 23 C -0.01 -0.51 5.59 30.11 0.17 -0.34 16 24 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 25 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.03 1.46 7.07 -2.39 -0.02 1.44 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.40 10.43 8.72 -92.70 -0.81 9.62 16 30 H 0.15 3.40 6.12 -2.91 -0.02 3.39 16 31 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.15 3.17 7.63 -2.91 -0.02 3.14 16 33 H 0.42 6.38 8.16 -92.71 -0.76 5.63 16 34 H 0.41 5.27 8.93 -92.71 -0.83 4.44 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 1.74 7.69 -2.39 -0.02 1.73 16 37 H 0.02 0.99 5.17 -2.38 -0.01 0.98 16 38 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -61.31 311.10 -0.43 -61.74 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -1.27 Total: 21.08 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 3.79 Total: -3.88 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -4.73 Total: -105.13 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.06 Total: -17.49 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.84 Total: 43.69 kcal Total: -61.31 -0.43 -61.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055219.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.519 kcal (2) G-P(sol) polarization free energy of solvation -61.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds