Wall clock time and date at job start Mon Mar 30 2020 02:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86805 * 120.00278 * 2 1 4 4 H 1.48503 * 109.47033 * 275.36258 * 3 2 1 5 5 H 1.48503 * 109.46630 * 35.36057 * 3 2 1 6 6 H 1.48500 * 109.47309 * 155.35879 * 3 2 1 7 7 C 1.40030 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99738 * 341.07530 * 7 2 1 9 9 C 1.41552 * 120.00320 * 161.35163 * 7 2 1 10 10 C 1.41189 * 120.99335 * 151.17569 * 9 7 2 11 11 C 1.36552 * 119.14298 * 179.97438 * 10 9 7 12 12 N 1.32100 * 121.27149 * 0.02562 * 11 10 9 13 13 C 1.32528 * 122.21563 * 359.97438 * 12 11 10 14 14 N 1.39078 * 119.65625 * 179.97438 * 13 12 11 15 15 C 1.48636 * 111.00259 * 242.52321 * 14 13 12 16 16 C 1.55178 * 103.39850 * 159.13336 * 15 14 13 17 17 H 1.09003 * 110.94176 * 81.85809 * 16 15 14 18 18 N 1.46894 * 110.78496 * 205.22308 * 16 15 14 19 19 C 1.53557 * 102.60710 * 323.50918 * 16 15 14 20 20 C 1.52899 * 115.62397 * 151.59051 * 19 16 15 21 21 O 1.44407 * 85.15000 * 95.02751 * 20 19 16 22 22 C 1.44407 * 93.53433 * 23.38305 * 21 20 19 23 23 C 1.48216 * 111.00239 * 359.97438 * 14 13 12 24 24 C 1.38750 * 120.68366 * 359.73422 * 13 12 11 25 25 H 0.97005 * 119.99659 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.42830 * 359.95877 * 10 9 7 27 27 H 1.07998 * 119.36493 * 180.02562 * 11 10 9 28 28 H 1.09006 * 110.63604 * 277.61711 * 15 14 13 29 29 H 1.09007 * 110.63135 * 40.65605 * 15 14 13 30 30 H 1.00897 * 111.00365 * 293.19363 * 18 16 15 31 31 H 1.00902 * 110.99565 * 57.14452 * 18 16 15 32 32 H 1.08997 * 113.92874 * 209.08021 * 20 19 16 33 33 H 1.09003 * 113.92208 * 340.97556 * 20 19 16 34 34 H 1.09001 * 113.91914 * 222.56986 * 22 21 20 35 35 H 1.08998 * 113.92650 * 90.67663 * 22 21 20 36 36 H 1.09007 * 110.03012 * 333.61699 * 23 14 13 37 37 H 1.08997 * 110.03092 * 95.05021 * 23 14 13 38 38 H 1.08006 * 120.66394 * 180.26812 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3757 2.1118 -1.3940 5 1 1.5001 2.6173 0.8103 6 1 3.5911 1.4101 0.5837 7 6 2.0076 -1.2127 -0.0005 8 1 1.5113 -2.1229 0.3024 9 6 3.3674 -1.2447 -0.3925 10 6 4.2514 -2.2147 0.1281 11 6 5.5556 -2.2112 -0.2765 12 7 6.0024 -1.3195 -1.1426 13 6 5.2188 -0.3865 -1.6639 14 7 5.7455 0.5265 -2.5713 15 6 5.6584 1.9131 -2.0432 16 6 6.7262 2.6798 -2.8678 17 1 6.3311 2.9720 -3.8408 18 7 7.2102 3.8542 -2.1301 19 6 7.8419 1.6363 -3.0238 20 6 8.7039 1.7726 -4.2793 21 8 9.6040 2.5187 -3.4317 22 6 9.1146 1.9046 -2.2198 23 6 7.1868 0.2719 -2.8050 24 6 3.8771 -0.3142 -1.3177 25 1 -0.4850 0.8401 -0.0004 26 1 3.9008 -2.9497 0.8375 27 1 6.2348 -2.9518 0.1192 28 1 4.6661 2.3292 -2.2181 29 1 5.9038 1.9359 -0.9813 30 1 6.4795 4.5421 -2.0257 31 1 7.5867 3.5876 -1.2328 32 1 9.1148 0.8290 -4.6380 33 1 8.2444 2.3679 -5.0684 34 1 8.9770 2.6033 -1.3946 35 1 9.6543 1.0023 -1.9323 36 1 7.6253 -0.2178 -1.9353 37 1 7.3172 -0.3509 -3.6900 38 1 3.2377 0.4436 -1.7461 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158765532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:27 Heat of formation + Delta-G solvation = 44.538809 kcal Electronic energy + Delta-G solvation = -21770.684976 eV Core-core repulsion = 18614.602212 eV Total energy + Delta-G solvation = -3156.082764 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.23092 -39.15021 -37.04117 -34.32905 -33.68299 -31.42287 -30.86885 -28.73735 -27.13010 -26.53693 -26.08774 -24.07242 -22.43422 -21.80401 -20.13903 -18.73960 -17.80105 -17.01810 -16.59925 -15.88847 -15.52678 -15.29255 -15.11969 -14.80618 -14.41916 -14.18156 -13.69557 -13.47457 -13.10942 -12.97709 -12.82094 -12.39613 -12.06439 -11.82587 -11.72760 -11.34630 -11.04283 -10.89332 -10.82708 -10.55533 -10.28007 -9.98013 -9.62259 -9.51686 -9.15154 -8.83717 -8.33635 -8.23896 -7.33101 -7.16058 -4.81253 2.33029 2.52032 2.93528 3.04073 3.12319 3.68746 3.78994 3.97456 4.23292 4.35585 4.46542 4.57899 4.81515 5.08300 5.21512 5.27772 5.32118 5.46924 5.49795 5.56531 5.75075 5.85675 5.92007 6.00613 6.06669 6.17071 6.18844 6.35045 6.42056 6.50596 6.62361 6.85396 6.93123 7.01857 7.22814 7.26870 7.35231 7.63083 7.98467 8.18202 8.39053 8.56671 9.21705 9.84646 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024179 B = 0.006107 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.767479 B = 4584.005175 C = 5399.297744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.088 3.912 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.250 1.250 7 C -0.436 4.436 8 H 0.096 0.904 9 C 0.120 3.880 10 C -0.267 4.267 11 C 0.123 3.877 12 N -0.603 5.603 13 C 0.308 3.692 14 N -0.457 5.457 15 C 0.010 3.990 16 C 0.114 3.886 17 H 0.102 0.898 18 N -0.830 5.830 19 C -0.137 4.137 20 C 0.056 3.944 21 O -0.370 6.370 22 C 0.055 3.945 23 C 0.046 3.954 24 C -0.289 4.289 25 H 0.289 0.711 26 H 0.108 0.892 27 H 0.126 0.874 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.343 0.657 31 H 0.339 0.661 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.905 5.715 -3.146 12.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.134 4.134 3 Si 0.741 3.259 4 H -0.192 1.192 5 H -0.216 1.216 6 H -0.173 1.173 7 C -0.466 4.466 8 H 0.114 0.886 9 C 0.111 3.889 10 C -0.290 4.290 11 C -0.028 4.028 12 N -0.323 5.323 13 C 0.081 3.919 14 N -0.176 5.176 15 C -0.119 4.119 16 C 0.001 3.999 17 H 0.120 0.880 18 N -0.360 5.360 19 C -0.138 4.138 20 C -0.022 4.022 21 O -0.289 6.289 22 C -0.022 4.022 23 C -0.082 4.082 24 C -0.314 4.314 25 H 0.099 0.901 26 H 0.126 0.874 27 H 0.144 0.856 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.157 0.843 31 H 0.154 0.846 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.934 6.028 -4.524 14.115 hybrid contribution -1.446 0.191 1.684 2.228 sum 10.488 6.219 -2.840 12.520 Atomic orbital electron populations 1.69651 1.08153 1.30674 1.33216 1.26190 0.94723 1.01901 0.90583 0.86279 0.80965 0.79735 0.78936 1.19197 1.21587 1.17347 1.19534 0.92934 0.96384 1.37778 0.88637 1.17819 0.93043 0.89764 0.88267 1.21617 0.94582 1.05629 1.07197 1.21479 0.93777 0.94767 0.92771 1.67131 1.38219 1.09602 1.17354 1.19358 0.90621 0.92232 0.89710 1.62119 1.15862 1.01251 1.38412 1.24212 1.01091 0.88926 0.97658 1.22011 0.91116 0.88628 0.98133 0.87984 1.58994 1.39012 1.12862 1.25118 1.23878 0.96031 0.96649 0.97281 1.23825 0.88368 0.96089 0.93875 1.89726 1.61568 1.60082 1.17484 1.23755 0.90946 0.97372 0.90166 1.22759 0.87165 0.94784 1.03458 1.21287 0.94609 1.08106 1.07363 0.90068 0.87362 0.85647 0.89767 0.93238 0.84345 0.84606 0.90139 0.89245 0.89151 0.90266 0.89320 0.90130 0.87357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.30 13.92 55.55 0.77 -19.53 16 2 C 0.09 2.21 5.42 -17.34 -0.09 2.12 16 3 Si 0.91 20.03 24.55 -169.99 -4.17 15.86 16 4 H -0.27 -5.63 6.70 56.52 0.38 -5.25 16 5 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.25 -5.65 6.87 56.52 0.39 -5.26 16 7 C -0.44 -11.44 9.63 -37.65 -0.36 -11.80 16 8 H 0.10 2.60 8.06 -52.48 -0.42 2.17 16 9 C 0.12 2.98 5.13 -106.56 -0.55 2.43 16 10 C -0.27 -6.04 9.85 -39.07 -0.38 -6.43 16 11 C 0.12 2.59 11.10 -18.05 -0.20 2.39 16 12 N -0.60 -13.09 8.12 -12.82 -0.10 -13.20 16 13 C 0.31 6.82 6.21 -154.98 -0.96 5.86 16 14 N -0.46 -8.58 5.31 -169.44 -0.90 -9.48 16 15 C 0.01 0.17 5.74 -1.71 -0.01 0.16 16 16 C 0.11 1.49 3.86 -66.27 -0.26 1.24 16 17 H 0.10 1.32 8.05 -51.93 -0.42 0.90 16 18 N -0.83 -9.42 8.71 -3.45 -0.03 -9.45 16 19 C -0.14 -1.80 1.17 -154.35 -0.18 -1.98 16 20 C 0.06 0.67 8.42 37.08 0.31 0.98 16 21 O -0.37 -5.16 12.44 -35.23 -0.44 -5.60 16 22 C 0.06 0.68 7.95 37.09 0.30 0.98 16 23 C 0.05 0.73 5.91 -3.13 -0.02 0.71 16 24 C -0.29 -6.94 6.66 -38.43 -0.26 -7.19 16 25 H 0.29 6.65 8.29 -40.82 -0.34 6.31 16 26 H 0.11 2.26 8.06 -52.49 -0.42 1.84 16 27 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 28 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.05 0.85 7.95 -51.92 -0.41 0.44 16 30 H 0.34 3.37 9.08 -39.29 -0.36 3.01 16 31 H 0.34 3.68 6.91 -39.29 -0.27 3.41 16 32 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.09 0.99 8.04 -51.93 -0.42 0.57 16 34 H 0.09 1.05 5.88 -51.93 -0.31 0.74 16 35 H 0.08 0.92 8.12 -51.93 -0.42 0.49 16 36 H 0.09 1.53 6.30 -51.93 -0.33 1.20 16 37 H 0.08 1.24 7.90 -51.93 -0.41 0.83 16 38 H 0.11 2.62 4.78 -52.48 -0.25 2.37 16 LS Contribution 302.50 15.07 4.56 4.56 Total: -1.00 -28.21 302.50 -7.85 -36.06 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -4.87 Total: 11.32 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -2.66 Total: -10.54 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.26 Total: -51.66 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.44 Total: -5.60 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.17 Total: 15.86 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.21 -7.85 -36.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158765532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.602 kcal (2) G-P(sol) polarization free energy of solvation -28.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds