Wall clock time and date at job start Mon Mar 30 2020 02:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86805 * 120.00278 * 2 1 4 4 H 1.48503 * 109.47033 * 275.36258 * 3 2 1 5 5 H 1.48503 * 109.46630 * 35.36057 * 3 2 1 6 6 H 1.48500 * 109.47309 * 155.35879 * 3 2 1 7 7 C 1.40030 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99738 * 341.07530 * 7 2 1 9 9 C 1.41552 * 120.00320 * 161.35163 * 7 2 1 10 10 C 1.41189 * 120.99335 * 151.17569 * 9 7 2 11 11 C 1.36552 * 119.14298 * 179.97438 * 10 9 7 12 12 N 1.32100 * 121.27149 * 0.02562 * 11 10 9 13 13 C 1.32528 * 122.21563 * 359.97438 * 12 11 10 14 14 N 1.39078 * 119.65625 * 179.97438 * 13 12 11 15 15 C 1.48636 * 111.00259 * 242.52321 * 14 13 12 16 16 C 1.55178 * 103.39850 * 159.13336 * 15 14 13 17 17 H 1.09003 * 110.94176 * 81.85809 * 16 15 14 18 18 N 1.46894 * 110.78496 * 205.22308 * 16 15 14 19 19 C 1.53557 * 102.60710 * 323.50918 * 16 15 14 20 20 C 1.52899 * 115.62397 * 151.59051 * 19 16 15 21 21 O 1.44407 * 85.15000 * 95.02751 * 20 19 16 22 22 C 1.44407 * 93.53433 * 23.38305 * 21 20 19 23 23 C 1.48216 * 111.00239 * 359.97438 * 14 13 12 24 24 C 1.38750 * 120.68366 * 359.73422 * 13 12 11 25 25 H 0.97005 * 119.99659 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.42830 * 359.95877 * 10 9 7 27 27 H 1.07998 * 119.36493 * 180.02562 * 11 10 9 28 28 H 1.09006 * 110.63604 * 277.61711 * 15 14 13 29 29 H 1.09007 * 110.63135 * 40.65605 * 15 14 13 30 30 H 1.00897 * 111.00365 * 293.19363 * 18 16 15 31 31 H 1.00902 * 110.99565 * 57.14452 * 18 16 15 32 32 H 1.08997 * 113.92874 * 209.08021 * 20 19 16 33 33 H 1.09003 * 113.92208 * 340.97556 * 20 19 16 34 34 H 1.09001 * 113.91914 * 222.56986 * 22 21 20 35 35 H 1.08998 * 113.92650 * 90.67663 * 22 21 20 36 36 H 1.09007 * 110.03012 * 333.61699 * 23 14 13 37 37 H 1.08997 * 110.03092 * 95.05021 * 23 14 13 38 38 H 1.08006 * 120.66394 * 180.26812 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3757 2.1118 -1.3940 5 1 1.5001 2.6173 0.8103 6 1 3.5911 1.4101 0.5837 7 6 2.0076 -1.2127 -0.0005 8 1 1.5113 -2.1229 0.3024 9 6 3.3674 -1.2447 -0.3925 10 6 4.2514 -2.2147 0.1281 11 6 5.5556 -2.2112 -0.2765 12 7 6.0024 -1.3195 -1.1426 13 6 5.2188 -0.3865 -1.6639 14 7 5.7455 0.5265 -2.5713 15 6 5.6584 1.9131 -2.0432 16 6 6.7262 2.6798 -2.8678 17 1 6.3311 2.9720 -3.8408 18 7 7.2102 3.8542 -2.1301 19 6 7.8419 1.6363 -3.0238 20 6 8.7039 1.7726 -4.2793 21 8 9.6040 2.5187 -3.4317 22 6 9.1146 1.9046 -2.2198 23 6 7.1868 0.2719 -2.8050 24 6 3.8771 -0.3142 -1.3177 25 1 -0.4850 0.8401 -0.0004 26 1 3.9008 -2.9497 0.8375 27 1 6.2348 -2.9518 0.1192 28 1 4.6661 2.3292 -2.2181 29 1 5.9038 1.9359 -0.9813 30 1 6.4795 4.5421 -2.0257 31 1 7.5867 3.5876 -1.2328 32 1 9.1148 0.8290 -4.6380 33 1 8.2444 2.3679 -5.0684 34 1 8.9770 2.6033 -1.3946 35 1 9.6543 1.0023 -1.9323 36 1 7.6253 -0.2178 -1.9353 37 1 7.3172 -0.3509 -3.6900 38 1 3.2377 0.4436 -1.7461 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158765532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:26 Heat of formation + Delta-G solvation = 23.132802 kcal Electronic energy + Delta-G solvation = -21771.613210 eV Core-core repulsion = 18614.602212 eV Total energy + Delta-G solvation = -3157.010998 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.35042 -40.73090 -38.41011 -36.03969 -35.02205 -33.25781 -32.14078 -30.19116 -28.39542 -27.89065 -27.49002 -25.35784 -24.02722 -23.20370 -21.81004 -19.78836 -19.57791 -18.17736 -18.03008 -17.17076 -16.91344 -16.79490 -16.39536 -16.05902 -16.03258 -15.60842 -15.10897 -14.92282 -14.78658 -14.33711 -14.08049 -13.74543 -13.56831 -13.16189 -13.08355 -12.87851 -12.66031 -12.58922 -12.37282 -11.84974 -11.59174 -11.41241 -11.33457 -10.71455 -10.58733 -10.18319 -10.00956 -9.82648 -9.06951 -8.94155 -6.77778 0.57353 0.69232 1.14479 1.29298 1.35688 1.99796 2.44824 2.68329 2.80732 3.19922 3.29494 3.38998 3.47271 3.72816 3.93019 4.04427 4.09201 4.37775 4.43735 4.48857 4.53837 4.60871 4.62818 4.66436 4.72472 4.80466 4.90974 4.99866 5.03978 5.09871 5.15352 5.24929 5.27456 5.56281 5.68291 5.80696 6.04801 6.07376 6.36038 6.43539 6.55223 6.63199 7.45596 8.00819 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024179 B = 0.006107 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.767479 B = 4584.005175 C = 5399.297744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.055 3.945 3 Si 0.966 3.034 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.262 1.262 7 C -0.472 4.472 8 H 0.067 0.933 9 C 0.106 3.894 10 C -0.282 4.282 11 C 0.130 3.870 12 N -0.597 5.597 13 C 0.312 3.688 14 N -0.469 5.469 15 C 0.010 3.990 16 C 0.126 3.874 17 H 0.109 0.891 18 N -0.825 5.825 19 C -0.134 4.134 20 C 0.060 3.940 21 O -0.388 6.388 22 C 0.057 3.943 23 C 0.050 3.950 24 C -0.306 4.306 25 H 0.299 0.701 26 H 0.119 0.881 27 H 0.167 0.833 28 H 0.076 0.924 29 H 0.040 0.960 30 H 0.354 0.646 31 H 0.344 0.656 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.358 6.937 -3.860 15.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.163 4.163 3 Si 0.790 3.210 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.503 4.503 8 H 0.086 0.914 9 C 0.097 3.903 10 C -0.305 4.305 11 C -0.022 4.022 12 N -0.317 5.317 13 C 0.083 3.917 14 N -0.187 5.187 15 C -0.119 4.119 16 C 0.013 3.987 17 H 0.127 0.873 18 N -0.356 5.356 19 C -0.136 4.136 20 C -0.017 4.017 21 O -0.307 6.307 22 C -0.020 4.020 23 C -0.077 4.077 24 C -0.331 4.331 25 H 0.110 0.890 26 H 0.137 0.863 27 H 0.184 0.816 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.168 0.832 31 H 0.159 0.841 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.381 7.263 -5.241 16.942 hybrid contribution -2.083 -0.281 1.862 2.808 sum 12.297 6.982 -3.379 14.540 Atomic orbital electron populations 1.69664 1.09084 1.31987 1.34602 1.26813 0.95327 1.04182 0.90002 0.85501 0.79222 0.76809 0.79509 1.18108 1.19774 1.18626 1.19532 0.94123 0.96148 1.40460 0.91447 1.18020 0.92898 0.90823 0.88510 1.21847 0.95251 1.05603 1.07796 1.22091 0.93708 0.94747 0.91645 1.67333 1.37891 1.09432 1.17056 1.19634 0.90175 0.92593 0.89311 1.62050 1.17720 1.01747 1.37228 1.24306 1.01996 0.87889 0.97699 1.21917 0.89995 0.88807 0.97962 0.87322 1.59006 1.39104 1.12119 1.25377 1.23876 0.96096 0.94839 0.98752 1.23973 0.87474 0.96841 0.93418 1.89718 1.62041 1.60684 1.18237 1.23856 0.90220 0.97893 0.90045 1.22787 0.85347 0.96525 1.03064 1.21318 0.95644 1.08262 1.07896 0.89042 0.86311 0.81585 0.90561 0.94155 0.83181 0.84111 0.88587 0.88197 0.88416 0.89347 0.90461 0.89690 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.61 13.92 21.84 0.30 -43.30 16 2 C 0.05 2.85 5.42 85.29 0.46 3.31 16 3 Si 0.97 41.56 24.55 68.60 1.68 43.24 16 4 H -0.26 -10.45 6.70 99.48 0.67 -9.78 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.26 -11.67 6.87 99.48 0.68 -10.98 16 7 C -0.47 -25.80 9.63 23.52 0.23 -25.58 16 8 H 0.07 3.91 8.06 -2.91 -0.02 3.89 16 9 C 0.11 5.36 5.13 -21.12 -0.11 5.25 16 10 C -0.28 -12.66 9.85 22.60 0.22 -12.44 16 11 C 0.13 5.17 11.10 84.26 0.94 6.10 16 12 N -0.60 -24.75 8.12 -194.47 -1.58 -26.33 16 13 C 0.31 13.41 6.21 132.91 0.83 14.24 16 14 N -0.47 -16.78 5.31 -690.00 -3.66 -20.44 16 15 C 0.01 0.31 5.74 86.71 0.50 0.81 16 16 C 0.13 2.97 3.86 45.85 0.18 3.15 16 17 H 0.11 2.47 8.05 -2.39 -0.02 2.45 16 18 N -0.83 -16.35 8.71 -164.82 -1.44 -17.79 16 19 C -0.13 -3.14 1.17 -52.08 -0.06 -3.20 16 20 C 0.06 1.23 8.42 71.93 0.61 1.83 16 21 O -0.39 -9.58 12.44 -148.98 -1.85 -11.43 16 22 C 0.06 1.24 7.95 71.94 0.57 1.82 16 23 C 0.05 1.46 5.91 86.03 0.51 1.97 16 24 C -0.31 -14.70 6.66 23.01 0.15 -14.55 16 25 H 0.30 14.00 8.29 -92.70 -0.77 13.23 16 26 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 27 H 0.17 5.22 8.06 -2.91 -0.02 5.20 16 28 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 29 H 0.04 1.32 7.95 -2.38 -0.02 1.30 16 30 H 0.35 5.92 9.08 -89.70 -0.81 5.11 16 31 H 0.34 6.47 6.91 -89.69 -0.62 5.85 16 32 H 0.10 1.69 8.10 -2.39 -0.02 1.67 16 33 H 0.10 1.86 8.04 -2.39 -0.02 1.84 16 34 H 0.10 1.97 5.88 -2.39 -0.01 1.96 16 35 H 0.09 1.77 8.12 -2.39 -0.02 1.75 16 36 H 0.08 2.46 6.30 -2.38 -0.02 2.45 16 37 H 0.08 2.39 7.90 -2.39 -0.02 2.37 16 38 H 0.10 4.94 4.78 -2.91 -0.01 4.93 16 Total: -1.00 -60.90 302.50 -1.92 -62.82 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: -0.39 Total: 30.52 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 5.02 Total: -17.29 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -6.37 Total: -107.87 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -1.85 Total: -11.43 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.68 Total: 43.24 kcal Total: -60.90 -1.92 -62.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158765532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.955 kcal (2) G-P(sol) polarization free energy of solvation -60.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds