Wall clock time and date at job start Mon Mar 30 2020 02:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86798 * 120.00175 * 2 1 4 4 H 1.48499 * 109.47313 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47003 * 299.99962 * 3 2 1 6 6 H 1.48501 * 109.47344 * 59.99929 * 3 2 1 7 7 C 1.40033 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99798 * 197.22109 * 7 2 1 9 9 C 1.41546 * 120.00017 * 17.22526 * 7 2 1 10 10 C 1.41186 * 120.99335 * 23.17416 * 9 7 2 11 11 C 1.36556 * 119.14749 * 179.97438 * 10 9 7 12 12 N 1.32093 * 121.26864 * 0.02562 * 11 10 9 13 13 C 1.32527 * 122.21701 * 359.97438 * 12 11 10 14 14 N 1.39088 * 119.65887 * 180.02562 * 13 12 11 15 15 C 1.48017 * 110.99964 * 239.87715 * 14 13 12 16 16 C 1.54312 * 107.04919 * 214.38304 * 15 14 13 17 17 H 1.09002 * 110.38980 * 243.31109 * 16 15 14 18 18 N 1.46902 * 110.38639 * 120.92866 * 16 15 14 19 19 C 1.53224 * 104.71879 * 2.12308 * 16 15 14 20 20 C 1.52599 * 116.37133 * 250.96578 * 19 16 15 21 21 O 1.44465 * 85.02854 * 219.92335 * 20 19 16 22 22 C 1.44469 * 93.60426 * 23.15384 * 21 20 19 23 23 C 1.48797 * 110.99864 * 122.18853 * 14 13 12 24 24 C 1.38744 * 120.68544 * 0.02562 * 13 12 11 25 25 H 0.97002 * 120.00067 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.42862 * 0.25522 * 10 9 7 27 27 H 1.08003 * 119.36663 * 180.02562 * 11 10 9 28 28 H 1.09005 * 109.91822 * 333.73584 * 15 14 13 29 29 H 1.09002 * 109.91904 * 95.02907 * 15 14 13 30 30 H 1.00898 * 111.00020 * 61.45503 * 18 16 15 31 31 H 1.00904 * 110.99711 * 185.40627 * 18 16 15 32 32 H 1.08994 * 113.94466 * 333.94404 * 20 19 16 33 33 H 1.09003 * 113.94284 * 105.90368 * 20 19 16 34 34 H 1.09008 * 113.94154 * 222.82648 * 22 21 20 35 35 H 1.08994 * 114.07927 * 90.88245 * 22 21 20 36 36 H 1.09005 * 110.68902 * 276.67573 * 23 14 13 37 37 H 1.08998 * 110.69902 * 39.87539 * 23 14 13 38 38 H 1.08002 * 120.66999 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 -0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8827 2.3965 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0513 -1.2335 0.2775 9 6 1.3475 -2.4112 -0.3619 10 6 0.1886 -2.3878 -1.1680 11 6 -0.4178 -3.5667 -1.4955 12 7 0.0590 -4.7236 -1.0723 13 6 1.1425 -4.8064 -0.3137 14 7 1.5984 -6.0531 0.1015 15 6 1.6153 -6.1467 1.5786 16 6 2.8240 -7.0258 1.9625 17 1 2.4889 -7.9360 2.4598 18 7 3.7463 -6.2783 2.8277 19 6 3.4988 -7.3636 0.6289 20 6 3.3710 -8.8072 0.1511 21 8 4.7475 -8.6600 -0.2620 22 6 5.0077 -7.5871 0.6698 23 6 3.0003 -6.2828 -0.3414 24 6 1.8268 -3.6622 0.0706 25 1 -0.4850 0.8401 0.0004 26 1 -0.2106 -1.4499 -1.5250 27 1 -1.3043 -3.5529 -2.1123 28 1 1.7262 -5.1529 2.0125 29 1 0.6932 -6.6083 1.9320 30 1 3.2942 -6.0050 3.6874 31 1 4.5819 -6.8128 3.0127 32 1 3.2253 -9.5282 0.9555 33 1 2.6728 -8.9394 -0.6755 34 1 5.5880 -6.7662 0.2483 35 1 5.3795 -7.9199 1.6388 36 1 3.0248 -6.6465 -1.3687 37 1 3.5905 -5.3721 -0.2399 38 1 2.7096 -3.7299 0.6891 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158765533.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:30 Heat of formation + Delta-G solvation = 19.353700 kcal Electronic energy + Delta-G solvation = -21454.137614 eV Core-core repulsion = 18296.962741 eV Total energy + Delta-G solvation = -3157.174873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.29898 -40.54214 -38.40339 -36.08784 -34.92724 -32.66014 -31.68202 -30.04372 -28.49947 -27.84208 -27.41006 -25.86490 -23.57181 -22.88339 -21.93536 -19.83560 -19.38631 -17.75570 -17.73133 -16.99374 -16.89426 -16.80702 -16.33984 -16.18465 -15.83838 -15.42506 -15.16811 -14.77414 -14.49062 -14.31294 -13.85148 -13.49737 -13.19929 -13.06195 -13.00280 -12.79799 -12.78553 -12.60273 -12.03525 -11.89181 -11.80817 -11.32386 -11.30537 -10.64207 -10.34109 -10.03564 -9.65337 -9.40906 -9.27976 -8.72792 -6.62372 0.73698 0.90075 1.36718 1.50570 1.52949 2.15421 2.58506 2.67223 2.75003 3.24487 3.36776 3.52454 3.69697 3.80006 4.11063 4.23313 4.23930 4.38349 4.48868 4.55612 4.62936 4.70106 4.82234 4.83390 4.86978 4.88895 4.94458 5.01325 5.03894 5.10361 5.17706 5.19004 5.44513 5.75978 5.80610 5.98246 6.21740 6.28431 6.50734 6.60556 6.75362 6.80225 7.73804 8.19193 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024249 B = 0.004869 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.386586 B = 5749.819350 C = 6273.369143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.040 3.960 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.483 4.483 8 H 0.079 0.921 9 C 0.105 3.895 10 C -0.231 4.231 11 C 0.089 3.911 12 N -0.573 5.573 13 C 0.295 3.705 14 N -0.476 5.476 15 C 0.048 3.952 16 C 0.103 3.897 17 H 0.078 0.922 18 N -0.847 5.847 19 C -0.120 4.120 20 C 0.059 3.941 21 O -0.406 6.406 22 C 0.064 3.936 23 C 0.078 3.922 24 C -0.305 4.305 25 H 0.294 0.706 26 H 0.118 0.882 27 H 0.149 0.851 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.353 0.647 31 H 0.354 0.646 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.975 -9.529 5.789 13.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.178 4.178 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.514 4.514 8 H 0.097 0.903 9 C 0.097 3.903 10 C -0.254 4.254 11 C -0.062 4.062 12 N -0.290 5.290 13 C 0.067 3.933 14 N -0.199 5.199 15 C -0.080 4.080 16 C -0.009 4.009 17 H 0.095 0.905 18 N -0.382 5.382 19 C -0.122 4.122 20 C -0.017 4.017 21 O -0.325 6.325 22 C -0.013 4.013 23 C -0.049 4.049 24 C -0.331 4.331 25 H 0.105 0.895 26 H 0.136 0.864 27 H 0.166 0.834 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.168 0.832 31 H 0.170 0.830 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.109 -10.149 4.538 12.685 hybrid contribution 0.547 1.789 1.163 2.202 sum 6.656 -8.360 5.700 12.111 Atomic orbital electron populations 1.69808 1.09182 1.31250 1.33280 1.26859 0.95528 1.04734 0.90639 0.85073 0.79321 0.75564 0.79288 1.18181 1.18496 1.18646 1.19886 0.98181 0.91932 1.41352 0.90318 1.18145 0.91205 0.93076 0.87915 1.21991 1.00916 0.98618 1.03827 1.22015 0.98699 0.87636 0.97861 1.67032 1.15301 1.29081 1.17546 1.19436 0.91637 0.88232 0.94026 1.61620 1.20825 1.27101 1.10337 1.23104 0.98958 0.99767 0.86179 1.21842 0.91123 0.94852 0.93087 0.90474 1.58596 1.09658 1.47989 1.22001 1.23596 0.97031 0.96086 0.95445 1.23935 0.83561 0.93924 1.00327 1.89718 1.28227 1.56812 1.57770 1.23763 0.93844 0.89306 0.94365 1.22727 0.86678 0.96972 0.98520 1.22169 1.05918 0.93897 1.11073 0.89455 0.86368 0.83413 0.93918 0.90263 0.83219 0.82967 0.87199 0.89156 0.89257 0.87073 0.91048 0.93760 0.88011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.85 10.90 21.84 0.24 -40.61 16 2 C 0.04 1.96 5.20 85.29 0.44 2.40 16 3 Si 0.99 36.64 29.59 68.60 2.03 38.67 16 4 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 5 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 6 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 7 C -0.48 -25.75 9.12 23.52 0.21 -25.53 16 8 H 0.08 4.08 7.90 -2.91 -0.02 4.06 16 9 C 0.10 5.76 5.61 -21.12 -0.12 5.64 16 10 C -0.23 -12.33 8.74 22.60 0.20 -12.14 16 11 C 0.09 4.42 11.10 84.26 0.94 5.35 16 12 N -0.57 -29.19 10.37 -194.47 -2.02 -31.21 16 13 C 0.29 14.25 5.85 132.90 0.78 15.03 16 14 N -0.48 -18.85 5.36 -690.58 -3.70 -22.55 16 15 C 0.05 1.57 6.32 86.53 0.55 2.12 16 16 C 0.10 2.37 3.84 45.44 0.17 2.55 16 17 H 0.08 1.39 7.87 -2.39 -0.02 1.37 16 18 N -0.85 -16.91 8.90 -166.51 -1.48 -18.39 16 19 C -0.12 -2.99 1.01 -52.19 -0.05 -3.04 16 20 C 0.06 1.31 8.48 71.84 0.61 1.91 16 21 O -0.41 -10.42 12.46 -148.98 -1.86 -12.27 16 22 C 0.06 1.36 7.80 71.84 0.56 1.92 16 23 C 0.08 2.71 5.78 86.13 0.50 3.21 16 24 C -0.30 -15.55 7.66 23.01 0.18 -15.37 16 25 H 0.29 13.19 8.29 -92.71 -0.77 12.42 16 26 H 0.12 6.38 6.17 -2.91 -0.02 6.36 16 27 H 0.15 6.36 8.06 -2.91 -0.02 6.34 16 28 H 0.04 1.63 6.46 -2.38 -0.02 1.61 16 29 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.35 6.29 9.06 -89.70 -0.81 5.48 16 31 H 0.35 5.04 7.27 -89.69 -0.65 4.39 16 32 H 0.11 1.75 8.00 -2.39 -0.02 1.74 16 33 H 0.09 2.15 8.12 -2.39 -0.02 2.14 16 34 H 0.09 1.99 8.12 -2.38 -0.02 1.97 16 35 H 0.11 1.62 6.91 -2.39 -0.02 1.61 16 36 H 0.07 2.58 8.07 -2.38 -0.02 2.56 16 37 H 0.04 1.70 6.63 -2.39 -0.02 1.69 16 38 H 0.10 5.07 7.09 -2.91 -0.02 5.05 16 Total: -1.00 -64.67 307.56 -2.19 -66.86 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: -0.36 Total: 35.45 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 4.96 Total: -15.95 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -6.96 Total: -112.76 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -1.86 Total: -12.27 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 2.03 Total: 38.67 kcal Total: -64.67 -2.19 -66.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158765533.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.209 kcal (2) G-P(sol) polarization free energy of solvation -64.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds