Wall clock time and date at job start Mon Mar 30 2020 01:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30890 * 1 3 3 Si 1.86805 * 119.99575 * 2 1 4 4 H 1.48497 * 109.47132 * 266.78102 * 3 2 1 5 5 H 1.48501 * 109.47150 * 26.78352 * 3 2 1 6 6 H 1.48508 * 109.47053 * 146.78433 * 3 2 1 7 7 C 1.39870 * 120.00438 * 179.72198 * 2 1 3 8 8 H 1.07999 * 120.00097 * 163.04826 * 7 2 1 9 9 C 1.41197 * 120.00167 * 343.05519 * 7 2 1 10 10 C 1.41321 * 120.57402 * 155.44368 * 9 7 2 11 11 C 1.36562 * 118.40684 * 179.97438 * 10 9 7 12 12 C 1.39702 * 119.49696 * 0.02562 * 11 10 9 13 13 N 1.38363 * 119.43117 * 179.97438 * 12 11 10 14 14 C 1.46503 * 120.00253 * 359.97438 * 13 12 11 15 15 C 1.52999 * 109.47370 * 179.97438 * 14 13 12 16 16 H 1.08996 * 109.67464 * 304.50896 * 15 14 13 17 17 C 1.53339 * 109.67590 * 183.96457 * 15 14 13 18 18 C 1.52904 * 108.69021 * 172.75105 * 17 15 14 19 19 N 1.45759 * 110.49396 * 50.72530 * 18 17 15 20 20 C 1.33351 * 124.10294 * 340.96554 * 19 18 17 21 21 O 1.21283 * 118.24375 * 182.22166 * 20 19 18 22 22 C 1.50175 * 123.51595 * 2.19708 * 20 19 18 23 23 N 1.32745 * 121.13723 * 359.97438 * 12 11 10 24 24 C 1.31482 * 121.73122 * 359.69649 * 23 12 11 25 25 H 0.96996 * 120.00960 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.79268 * 359.97438 * 10 9 7 27 27 H 1.08001 * 120.24951 * 180.02562 * 11 10 9 28 28 H 0.97006 * 119.99925 * 179.97438 * 13 12 11 29 29 H 1.08995 * 109.46614 * 300.00056 * 14 13 12 30 30 H 1.08999 * 109.46865 * 60.00085 * 14 13 12 31 31 H 1.09001 * 109.60687 * 292.49957 * 17 15 14 32 32 H 1.09008 * 109.60092 * 52.98237 * 17 15 14 33 33 H 1.09000 * 109.28417 * 290.42702 * 18 17 15 34 34 H 1.08988 * 109.31276 * 171.04578 * 18 17 15 35 35 H 0.96997 * 117.94536 * 160.94581 * 19 18 17 36 36 H 1.08995 * 109.40651 * 222.29491 * 22 20 19 37 37 H 1.09004 * 109.40246 * 102.54099 * 22 20 19 38 38 H 1.07999 * 119.81826 * 180.29238 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6179 0.0000 4 1 2.5584 2.0072 -1.3978 5 1 1.4078 2.6714 0.6309 6 1 3.5048 1.4609 0.7670 7 6 2.0083 -1.2112 0.0059 8 1 3.0531 -1.2328 -0.2667 9 6 1.3485 -2.4058 0.3681 10 6 1.8226 -3.6561 -0.0894 11 6 1.1507 -4.7834 0.2883 12 6 0.0247 -4.6711 1.1075 13 7 -0.6553 -5.8142 1.4890 14 6 -0.1933 -7.1277 1.0336 15 6 -1.1133 -8.2144 1.5936 16 1 -1.1596 -8.1322 2.6795 17 6 -0.5775 -9.5967 1.2021 18 6 -1.4042 -10.6640 1.9201 19 7 -2.8282 -10.4308 1.7141 20 6 -3.3463 -9.2651 1.3255 21 8 -4.5519 -9.1775 1.2263 22 6 -2.5172 -8.0549 1.0045 23 7 -0.4041 -3.4867 1.5263 24 6 0.2108 -2.3724 1.1962 25 1 -0.4851 0.8399 -0.0004 26 1 2.6953 -3.7184 -0.7226 27 1 1.4874 -5.7544 -0.0438 28 1 -1.4380 -5.7458 2.0580 29 1 -0.2115 -7.1616 -0.0557 30 1 0.8244 -7.2970 1.3854 31 1 -0.6649 -9.7309 0.1239 32 1 0.4676 -9.6817 1.5000 33 1 -1.1846 -10.6318 2.9873 34 1 -1.1401 -11.6470 1.5305 35 1 -3.4369 -11.1698 1.8692 36 1 -2.9895 -7.1692 1.4292 37 1 -2.4451 -7.9418 -0.0773 38 1 -0.1622 -1.4257 1.5583 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162324918.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:29 Heat of formation + Delta-G solvation = -16.486872 kcal Electronic energy + Delta-G solvation = -20317.002327 eV Core-core repulsion = 17158.273290 eV Total energy + Delta-G solvation = -3158.729036 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48330 -38.58053 -37.16061 -35.42768 -33.86378 -32.40468 -31.00721 -29.88157 -28.76715 -26.80704 -24.66337 -23.50382 -22.35696 -21.07348 -20.57712 -19.43805 -17.59176 -17.30960 -16.54592 -16.07092 -15.82849 -15.53408 -14.90926 -14.70911 -14.39761 -13.81144 -13.60071 -13.50499 -13.25170 -13.06862 -12.52978 -12.23998 -11.94733 -11.84628 -11.46527 -11.37602 -11.17143 -11.10157 -11.04185 -10.81319 -10.70228 -10.03912 -9.87670 -9.39206 -9.34228 -8.73779 -8.30581 -7.88014 -6.78358 -6.65754 -4.17701 2.50140 2.82029 2.92276 3.06893 3.10735 3.14437 3.27771 3.95841 3.99526 4.32889 4.42905 4.48794 4.62688 4.73443 5.03504 5.07873 5.16514 5.38363 5.47804 5.52348 5.69047 5.74832 5.79362 5.91366 6.07959 6.13158 6.36693 6.53347 6.68518 6.81844 7.09772 7.19938 7.34483 7.40824 7.56718 8.03606 8.08649 8.18246 8.47705 8.54518 8.87880 8.92127 9.79723 10.25881 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.045318 B = 0.003128 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.712685 B = 8948.212533 C = 9387.768633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.458 4.458 8 H 0.075 0.925 9 C 0.027 3.973 10 C -0.158 4.158 11 C -0.199 4.199 12 C 0.273 3.727 13 N -0.746 5.746 14 C 0.151 3.849 15 C -0.101 4.101 16 H 0.084 0.916 17 C -0.130 4.130 18 C 0.112 3.888 19 N -0.724 5.724 20 C 0.521 3.479 21 O -0.560 6.560 22 C -0.129 4.129 23 N -0.525 5.525 24 C 0.081 3.919 25 H 0.281 0.719 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.389 0.611 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.397 0.603 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.475 -17.062 2.745 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.490 4.490 8 H 0.094 0.906 9 C 0.022 3.978 10 C -0.185 4.185 11 C -0.223 4.223 12 C 0.044 3.956 13 N -0.386 5.386 14 C 0.025 3.975 15 C -0.120 4.120 16 H 0.103 0.897 17 C -0.169 4.169 18 C -0.013 4.013 19 N -0.376 5.376 20 C 0.309 3.691 21 O -0.438 6.438 22 C -0.169 4.169 23 N -0.240 5.240 24 C -0.081 4.081 25 H 0.092 0.908 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.223 0.777 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.232 0.768 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.789 -16.740 3.059 17.035 hybrid contribution 0.718 0.433 -0.419 0.937 sum -0.070 -16.307 2.640 16.519 Atomic orbital electron populations 1.69775 1.07408 1.29262 1.36729 1.25852 0.94739 1.01171 0.92513 0.86326 0.80469 0.80738 0.79184 1.19623 1.20173 1.18634 1.19284 0.97556 0.90963 1.41175 0.90638 1.18369 0.94192 0.92704 0.92512 1.20917 1.01764 0.92639 1.03156 1.20582 0.98839 0.97996 1.04890 1.17794 0.92732 0.86039 0.99060 1.43598 1.33932 1.01884 1.59141 1.21022 0.96363 0.81935 0.98206 1.21492 0.94229 0.94821 1.01436 0.89746 1.21879 1.00278 0.93244 1.01466 1.21374 0.79987 0.99341 1.00575 1.45504 1.09016 1.13425 1.69650 1.20318 0.88630 0.84610 0.75558 1.90765 1.15632 1.84215 1.53196 1.21732 0.94917 0.96232 1.04040 1.66772 1.33074 0.97741 1.26389 1.22792 0.95061 0.93616 0.96601 0.90812 0.88114 0.88612 0.77709 0.93008 0.92848 0.90502 0.89190 0.91531 0.90461 0.76817 0.87738 0.87832 0.82997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.94 10.95 55.54 0.61 -20.33 16 2 C 0.07 1.84 5.16 -17.34 -0.09 1.75 16 3 Si 0.91 18.64 29.59 -169.99 -5.03 13.61 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.06 9.07 -37.85 -0.34 -12.40 16 8 H 0.08 1.90 7.90 -52.49 -0.41 1.48 16 9 C 0.03 0.72 5.58 -106.65 -0.60 0.13 16 10 C -0.16 -3.80 9.88 -39.02 -0.39 -4.19 16 11 C -0.20 -4.35 9.24 -39.64 -0.37 -4.72 16 12 C 0.27 6.10 7.64 -155.13 -1.19 4.91 16 13 N -0.75 -12.79 5.50 -60.36 -0.33 -13.12 16 14 C 0.15 1.89 4.27 -4.04 -0.02 1.87 16 15 C -0.10 -0.94 2.30 -90.40 -0.21 -1.15 16 16 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 17 C -0.13 -0.84 5.32 -26.60 -0.14 -0.98 16 18 C 0.11 0.62 7.17 -4.49 -0.03 0.59 16 19 N -0.72 -6.06 5.45 -61.40 -0.33 -6.40 16 20 C 0.52 6.27 7.71 -11.87 -0.09 6.18 16 21 O -0.56 -9.23 17.78 5.56 0.10 -9.13 16 22 C -0.13 -1.43 5.10 -28.10 -0.14 -1.57 16 23 N -0.53 -13.28 10.37 -11.79 -0.12 -13.40 16 24 C 0.08 2.17 9.89 -16.75 -0.17 2.00 16 25 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 26 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 27 H 0.10 1.78 6.64 -52.49 -0.35 1.43 16 28 H 0.39 6.43 7.89 -40.82 -0.32 6.11 16 29 H 0.05 0.67 7.87 -51.93 -0.41 0.26 16 30 H 0.05 0.66 7.90 -51.93 -0.41 0.25 16 31 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 32 H 0.09 0.47 8.14 -51.92 -0.42 0.04 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.28 8.14 -51.94 -0.42 -0.15 16 35 H 0.40 2.92 8.80 -40.82 -0.36 2.56 16 36 H 0.10 1.29 7.50 -51.93 -0.39 0.90 16 37 H 0.10 1.14 8.07 -51.93 -0.42 0.72 16 38 H 0.15 4.20 6.16 -52.49 -0.32 3.87 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -31.63 315.05 -9.19 -40.82 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.06 Total: 10.79 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -3.76 Total: -7.59 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.18 Total: -53.25 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.10 Total: -9.13 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.63 -9.19 -40.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162324918.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.337 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds