Wall clock time and date at job start Mon Mar 30 2020 01:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30890 * 1 3 3 Si 1.86805 * 119.99575 * 2 1 4 4 H 1.48497 * 109.47132 * 266.78102 * 3 2 1 5 5 H 1.48501 * 109.47150 * 26.78352 * 3 2 1 6 6 H 1.48508 * 109.47053 * 146.78433 * 3 2 1 7 7 C 1.39870 * 120.00438 * 179.72198 * 2 1 3 8 8 H 1.07999 * 120.00097 * 163.04826 * 7 2 1 9 9 C 1.41197 * 120.00167 * 343.05519 * 7 2 1 10 10 C 1.41321 * 120.57402 * 155.44368 * 9 7 2 11 11 C 1.36562 * 118.40684 * 179.97438 * 10 9 7 12 12 C 1.39702 * 119.49696 * 0.02562 * 11 10 9 13 13 N 1.38363 * 119.43117 * 179.97438 * 12 11 10 14 14 C 1.46503 * 120.00253 * 359.97438 * 13 12 11 15 15 C 1.52999 * 109.47370 * 179.97438 * 14 13 12 16 16 H 1.08996 * 109.67464 * 304.50896 * 15 14 13 17 17 C 1.53339 * 109.67590 * 183.96457 * 15 14 13 18 18 C 1.52904 * 108.69021 * 172.75105 * 17 15 14 19 19 N 1.45759 * 110.49396 * 50.72530 * 18 17 15 20 20 C 1.33351 * 124.10294 * 340.96554 * 19 18 17 21 21 O 1.21283 * 118.24375 * 182.22166 * 20 19 18 22 22 C 1.50175 * 123.51595 * 2.19708 * 20 19 18 23 23 N 1.32745 * 121.13723 * 359.97438 * 12 11 10 24 24 C 1.31482 * 121.73122 * 359.69649 * 23 12 11 25 25 H 0.96996 * 120.00960 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.79268 * 359.97438 * 10 9 7 27 27 H 1.08001 * 120.24951 * 180.02562 * 11 10 9 28 28 H 0.97006 * 119.99925 * 179.97438 * 13 12 11 29 29 H 1.08995 * 109.46614 * 300.00056 * 14 13 12 30 30 H 1.08999 * 109.46865 * 60.00085 * 14 13 12 31 31 H 1.09001 * 109.60687 * 292.49957 * 17 15 14 32 32 H 1.09008 * 109.60092 * 52.98237 * 17 15 14 33 33 H 1.09000 * 109.28417 * 290.42702 * 18 17 15 34 34 H 1.08988 * 109.31276 * 171.04578 * 18 17 15 35 35 H 0.96997 * 117.94536 * 160.94581 * 19 18 17 36 36 H 1.08995 * 109.40651 * 222.29491 * 22 20 19 37 37 H 1.09004 * 109.40246 * 102.54099 * 22 20 19 38 38 H 1.07999 * 119.81826 * 180.29238 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6179 0.0000 4 1 2.5584 2.0072 -1.3978 5 1 1.4078 2.6714 0.6309 6 1 3.5048 1.4609 0.7670 7 6 2.0083 -1.2112 0.0059 8 1 3.0531 -1.2328 -0.2667 9 6 1.3485 -2.4058 0.3681 10 6 1.8226 -3.6561 -0.0894 11 6 1.1507 -4.7834 0.2883 12 6 0.0247 -4.6711 1.1075 13 7 -0.6553 -5.8142 1.4890 14 6 -0.1933 -7.1277 1.0336 15 6 -1.1133 -8.2144 1.5936 16 1 -1.1596 -8.1322 2.6795 17 6 -0.5775 -9.5967 1.2021 18 6 -1.4042 -10.6640 1.9201 19 7 -2.8282 -10.4308 1.7141 20 6 -3.3463 -9.2651 1.3255 21 8 -4.5519 -9.1775 1.2263 22 6 -2.5172 -8.0549 1.0045 23 7 -0.4041 -3.4867 1.5263 24 6 0.2108 -2.3724 1.1962 25 1 -0.4851 0.8399 -0.0004 26 1 2.6953 -3.7184 -0.7226 27 1 1.4874 -5.7544 -0.0438 28 1 -1.4380 -5.7458 2.0580 29 1 -0.2115 -7.1616 -0.0557 30 1 0.8244 -7.2970 1.3854 31 1 -0.6649 -9.7309 0.1239 32 1 0.4676 -9.6817 1.5000 33 1 -1.1846 -10.6318 2.9873 34 1 -1.1401 -11.6470 1.5305 35 1 -3.4369 -11.1698 1.8692 36 1 -2.9895 -7.1692 1.4292 37 1 -2.4451 -7.9418 -0.0773 38 1 -0.1622 -1.4257 1.5583 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162324918.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:29 Heat of formation + Delta-G solvation = -38.652529 kcal Electronic energy + Delta-G solvation = -20317.963502 eV Core-core repulsion = 17158.273290 eV Total energy + Delta-G solvation = -3159.690211 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.35238 -40.33463 -38.20675 -36.65853 -35.43870 -33.68810 -32.85961 -30.71555 -30.40330 -28.05676 -26.20951 -24.44378 -23.89710 -22.54547 -22.04557 -20.15955 -19.22293 -18.41165 -17.88097 -17.45493 -17.07743 -16.62899 -16.34905 -15.71168 -15.49329 -15.26716 -14.96445 -14.69212 -14.55727 -14.34166 -13.79130 -13.58534 -13.38262 -13.25679 -12.86761 -12.75229 -12.64731 -12.47262 -12.18689 -11.91548 -11.80259 -11.74293 -11.17281 -10.85716 -10.43169 -10.14657 -10.05472 -9.77077 -8.61851 -8.40725 -6.10652 0.98921 1.07610 1.42687 1.54489 1.57349 1.60072 2.26278 2.34939 2.69504 2.86782 3.52683 3.69965 3.81584 3.83958 3.88158 4.31472 4.37343 4.43298 4.52138 4.60847 4.64382 4.75942 4.85009 4.85737 4.94908 4.97586 5.05278 5.13924 5.30633 5.36179 5.47971 5.56221 5.77594 5.85283 6.17417 6.31942 6.39291 6.74776 6.78930 6.96484 7.15820 7.19196 7.94273 8.43021 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.045318 B = 0.003128 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.712685 B = 8948.212533 C = 9387.768633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.031 3.969 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.492 4.492 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.159 4.159 11 C -0.197 4.197 12 C 0.280 3.720 13 N -0.739 5.739 14 C 0.145 3.855 15 C -0.087 4.087 16 H 0.088 0.912 17 C -0.126 4.126 18 C 0.107 3.893 19 N -0.710 5.710 20 C 0.519 3.481 21 O -0.615 6.615 22 C -0.128 4.128 23 N -0.551 5.551 24 C 0.053 3.947 25 H 0.286 0.714 26 H 0.118 0.882 27 H 0.137 0.863 28 H 0.392 0.608 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.403 0.597 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.237 -19.463 2.720 19.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.182 4.182 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.524 4.524 8 H 0.096 0.904 9 C -0.012 4.012 10 C -0.185 4.185 11 C -0.221 4.221 12 C 0.047 3.953 13 N -0.377 5.377 14 C 0.021 3.979 15 C -0.106 4.106 16 H 0.106 0.894 17 C -0.164 4.164 18 C -0.015 4.015 19 N -0.360 5.360 20 C 0.307 3.693 21 O -0.498 6.498 22 C -0.168 4.168 23 N -0.267 5.267 24 C -0.106 4.106 25 H 0.096 0.904 26 H 0.136 0.864 27 H 0.155 0.845 28 H 0.225 0.775 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.132 0.868 33 H 0.100 0.900 34 H 0.126 0.874 35 H 0.239 0.761 36 H 0.103 0.897 37 H 0.121 0.879 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.010 -19.201 3.049 19.468 hybrid contribution 0.144 0.899 -0.389 0.990 sum 1.153 -18.302 2.660 18.530 Atomic orbital electron populations 1.69857 1.08979 1.30348 1.37749 1.26714 0.95434 1.04476 0.91554 0.85204 0.78959 0.76034 0.79424 1.18786 1.19558 1.18215 1.19541 0.97861 0.92029 1.42939 0.90406 1.18651 0.94901 0.94145 0.93549 1.21264 1.02133 0.92490 1.02654 1.20945 0.98043 0.99193 1.03903 1.18277 0.92758 0.86530 0.97712 1.43842 1.33339 1.02146 1.58381 1.21340 0.97758 0.80229 0.98602 1.21403 0.92289 0.95665 1.01272 0.89393 1.21914 1.01571 0.91037 1.01889 1.21672 0.77651 1.00518 1.01708 1.45515 1.10711 1.12313 1.67501 1.20432 0.87857 0.85666 0.75340 1.90740 1.17864 1.85228 1.56013 1.21676 0.95904 0.95272 1.03958 1.66753 1.33832 0.98527 1.27590 1.22500 0.96312 0.93593 0.98235 0.90382 0.86359 0.84483 0.77454 0.92609 0.91295 0.90153 0.86800 0.89990 0.87357 0.76092 0.89726 0.87946 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.51 10.95 21.82 0.24 -45.27 16 2 C 0.03 1.58 5.16 85.23 0.44 2.02 16 3 Si 0.98 38.82 29.59 68.60 2.03 40.85 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 5 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 6 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 7 C -0.49 -26.61 9.07 23.39 0.21 -26.39 16 8 H 0.08 3.99 7.90 -2.91 -0.02 3.96 16 9 C -0.01 -0.40 5.58 -21.18 -0.12 -0.52 16 10 C -0.16 -7.53 9.88 22.64 0.22 -7.31 16 11 C -0.20 -8.22 9.24 22.23 0.21 -8.01 16 12 C 0.28 12.26 7.64 133.32 1.02 13.28 16 13 N -0.74 -24.08 5.50 -344.87 -1.90 -25.98 16 14 C 0.14 3.15 4.27 86.38 0.37 3.52 16 15 C -0.09 -1.36 2.30 -10.65 -0.02 -1.39 16 16 H 0.09 1.37 8.13 -2.39 -0.02 1.35 16 17 C -0.13 -1.06 5.32 30.68 0.16 -0.90 16 18 C 0.11 0.72 7.17 86.49 0.62 1.34 16 19 N -0.71 -10.09 5.45 -467.35 -2.55 -12.64 16 20 C 0.52 12.00 7.71 87.71 0.68 12.67 16 21 O -0.62 -20.60 17.78 -3.04 -0.05 -20.66 16 22 C -0.13 -2.69 5.10 29.71 0.15 -2.54 16 23 N -0.55 -28.46 10.37 -191.21 -1.98 -30.45 16 24 C 0.05 2.94 9.89 85.36 0.84 3.79 16 25 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 26 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 27 H 0.14 4.52 6.64 -2.91 -0.02 4.50 16 28 H 0.39 12.59 7.89 -92.70 -0.73 11.86 16 29 H 0.06 1.23 7.87 -2.39 -0.02 1.21 16 30 H 0.07 1.37 7.90 -2.39 -0.02 1.35 16 31 H 0.08 0.69 8.12 -2.39 -0.02 0.67 16 32 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.40 5.02 8.80 -92.71 -0.82 4.20 16 36 H 0.08 2.11 7.50 -2.39 -0.02 2.09 16 37 H 0.10 2.16 8.07 -2.39 -0.02 2.14 16 38 H 0.13 7.67 6.16 -2.91 -0.02 7.66 16 Total: -1.00 -72.38 315.05 0.12 -72.27 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -0.45 Total: 32.33 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 4.78 Total: -10.46 kcal Atomic # 7 Polarization: -108.14 SS G_CDS: -6.19 Total: -114.33 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.05 Total: -20.66 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -72.38 0.12 -72.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162324918.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.615 kcal (2) G-P(sol) polarization free energy of solvation -72.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds