Wall clock time and date at job start Mon Mar 30 2020 01:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86799 * 119.99838 * 2 1 4 4 H 1.48498 * 109.47399 * 265.16951 * 3 2 1 5 5 H 1.48498 * 109.47234 * 25.17082 * 3 2 1 6 6 H 1.48507 * 109.46801 * 145.16790 * 3 2 1 7 7 C 1.39873 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99748 * 163.01845 * 7 2 1 9 9 C 1.41192 * 120.00101 * 343.02429 * 7 2 1 10 10 C 1.41329 * 120.57124 * 335.40655 * 9 7 2 11 11 C 1.36564 * 118.40803 * 179.77262 * 10 9 7 12 12 C 1.39705 * 119.49431 * 0.52364 * 11 10 9 13 13 N 1.38369 * 119.43248 * 179.73441 * 12 11 10 14 14 C 1.46503 * 119.99900 * 359.97438 * 13 12 11 15 15 C 1.53000 * 109.47262 * 179.97438 * 14 13 12 16 16 H 1.08997 * 109.66632 * 55.49877 * 15 14 13 17 17 C 1.53342 * 109.67459 * 176.03617 * 15 14 13 18 18 C 1.52931 * 108.66451 * 187.28017 * 17 15 14 19 19 N 1.45754 * 110.47720 * 309.21951 * 18 17 15 20 20 C 1.33354 * 124.10918 * 19.10623 * 19 18 17 21 21 O 1.21275 * 118.24818 * 177.73346 * 20 19 18 22 22 C 1.50174 * 123.50379 * 357.76022 * 20 19 18 23 23 N 1.32739 * 121.13785 * 359.72095 * 12 11 10 24 24 C 1.31483 * 121.73537 * 359.97438 * 23 12 11 25 25 H 0.96995 * 120.00195 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.79132 * 0.02562 * 10 9 7 27 27 H 1.08000 * 120.24890 * 180.23790 * 11 10 9 28 28 H 0.96994 * 120.00052 * 179.97438 * 13 12 11 29 29 H 1.09000 * 109.47255 * 300.00685 * 14 13 12 30 30 H 1.09011 * 109.47125 * 59.99824 * 14 13 12 31 31 H 1.09009 * 109.60507 * 307.02301 * 17 15 14 32 32 H 1.08997 * 109.60648 * 67.50703 * 17 15 14 33 33 H 1.08999 * 109.29469 * 188.91742 * 18 17 15 34 34 H 1.08998 * 109.14964 * 69.42501 * 18 17 15 35 35 H 0.96999 * 117.94701 * 199.09405 * 19 18 17 36 36 H 1.09003 * 109.40182 * 257.44682 * 22 20 19 37 37 H 1.09001 * 109.33086 * 137.66644 * 22 20 19 38 38 H 1.08003 * 119.82072 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.5926 1.9875 -1.3951 5 1 1.3931 2.6800 0.5955 6 1 3.4857 1.4718 0.7997 7 6 2.0084 -1.2113 -0.0005 8 1 3.0531 -1.2315 -0.2737 9 6 1.3486 -2.4076 0.3559 10 6 0.2034 -2.3778 1.1836 11 6 -0.4028 -3.5607 1.4969 12 6 0.1266 -4.7563 1.0050 13 7 -0.4854 -5.9546 1.3278 14 6 -1.6777 -5.9622 2.1790 15 6 -2.1521 -7.4029 2.3795 16 1 -1.3374 -8.0047 2.7823 17 6 -3.3398 -7.4252 3.3491 18 6 -3.6784 -8.8805 3.6750 19 7 -3.8184 -9.6580 2.4502 20 6 -3.3288 -9.2846 1.2673 21 8 -3.4712 -10.0342 0.3247 22 6 -2.6099 -7.9858 1.0403 23 7 1.2065 -4.7627 0.2331 24 6 1.8233 -3.6510 -0.1024 25 1 -0.4850 0.8400 0.0004 26 1 -0.1854 -1.4415 1.5559 27 1 -1.2820 -3.5722 2.1239 28 1 -0.1250 -6.7896 0.9905 29 1 -1.4366 -5.5207 3.1460 30 1 -2.4683 -5.3827 1.7021 31 1 -3.0740 -6.8976 4.2653 32 1 -4.2005 -6.9444 2.8843 33 1 -4.6138 -8.9163 4.2334 34 1 -2.8796 -9.3060 4.2825 35 1 -4.2977 -10.4999 2.4985 36 1 -3.2813 -7.2813 0.5493 37 1 -1.7412 -8.1604 0.4055 38 1 2.6995 -3.6921 -0.7326 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162324919.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:33 Heat of formation + Delta-G solvation = -16.734412 kcal Electronic energy + Delta-G solvation = -20341.679183 eV Core-core repulsion = 17182.939412 eV Total energy + Delta-G solvation = -3158.739771 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47933 -38.57889 -37.15360 -35.41231 -33.93071 -32.49279 -30.59407 -29.88855 -29.04507 -26.79147 -24.67659 -23.48962 -22.31547 -21.19287 -20.47725 -19.43160 -17.57480 -17.26211 -16.58862 -16.14385 -15.75277 -15.38690 -15.00276 -14.71154 -14.42221 -13.80938 -13.61284 -13.51411 -13.25264 -13.04854 -12.53012 -12.21402 -11.93673 -11.81986 -11.54410 -11.36487 -11.27924 -11.07473 -11.02050 -11.01334 -10.56648 -9.88255 -9.79324 -9.40809 -9.33780 -8.73392 -8.23995 -8.01466 -6.83984 -6.61373 -4.19042 2.50376 2.76180 2.98600 3.07494 3.08502 3.12960 3.29394 3.94853 3.99375 4.33752 4.44116 4.49837 4.63450 4.71141 5.04587 5.08815 5.17368 5.39690 5.49331 5.53828 5.69974 5.76355 5.78697 5.92011 6.07806 6.14759 6.48165 6.53603 6.63267 6.86717 7.10181 7.17801 7.32872 7.41522 7.74364 7.91871 8.03815 8.25986 8.42462 8.64999 8.84835 8.91548 9.72002 10.23746 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.041470 B = 0.003165 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.018249 B = 8845.625190 C = 9128.969130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.458 4.458 8 H 0.077 0.923 9 C 0.030 3.970 10 C -0.094 4.094 11 C -0.203 4.203 12 C 0.277 3.723 13 N -0.746 5.746 14 C 0.151 3.849 15 C -0.100 4.100 16 H 0.084 0.916 17 C -0.131 4.131 18 C 0.112 3.888 19 N -0.723 5.723 20 C 0.521 3.479 21 O -0.560 6.560 22 C -0.129 4.129 23 N -0.522 5.522 24 C 0.012 3.988 25 H 0.279 0.721 26 H 0.126 0.874 27 H 0.096 0.904 28 H 0.388 0.612 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.397 0.603 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.132 -10.359 9.508 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.025 3.975 10 C -0.121 4.121 11 C -0.227 4.227 12 C 0.045 3.955 13 N -0.386 5.386 14 C 0.025 3.975 15 C -0.119 4.119 16 H 0.102 0.898 17 C -0.169 4.169 18 C -0.013 4.013 19 N -0.376 5.376 20 C 0.309 3.691 21 O -0.439 6.439 22 C -0.169 4.169 23 N -0.237 5.237 24 C -0.147 4.147 25 H 0.090 0.910 26 H 0.144 0.856 27 H 0.115 0.885 28 H 0.222 0.778 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.232 0.768 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.080 -11.025 8.790 16.251 hybrid contribution -0.125 1.111 0.260 1.148 sum -8.205 -9.914 9.050 15.733 Atomic orbital electron populations 1.69813 1.07480 1.29028 1.36992 1.25847 0.94718 1.01164 0.92480 0.86343 0.80452 0.80672 0.79331 1.19513 1.20313 1.18619 1.19308 0.97686 0.90894 1.41003 0.90452 1.18355 0.93415 0.93558 0.92139 1.21293 0.97186 0.96496 0.97095 1.20794 1.02442 0.92824 1.06597 1.17732 0.93183 0.85229 0.99375 1.43578 1.31024 1.05650 1.58326 1.21032 0.87984 0.93925 0.94608 1.21488 0.98067 0.97619 0.94775 0.89777 1.21891 0.98652 0.95576 1.00805 1.21387 1.01976 0.91908 0.86005 1.45506 1.57953 1.25245 1.08878 1.20320 0.78174 0.88591 0.82022 1.90760 1.59015 1.53594 1.40497 1.21732 1.02030 0.94016 0.99131 1.66518 1.08929 1.32949 1.15337 1.22199 1.01572 0.87324 1.03560 0.91041 0.85584 0.88547 0.77808 0.92787 0.92917 0.89168 0.90471 0.90424 0.91527 0.76827 0.87801 0.87786 0.85583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.62 10.94 55.54 0.61 -20.01 16 2 C 0.07 1.84 5.18 -17.34 -0.09 1.75 16 3 Si 0.91 18.52 29.59 -169.99 -5.03 13.49 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -11.99 9.06 -37.85 -0.34 -12.33 16 8 H 0.08 1.94 7.90 -52.49 -0.41 1.52 16 9 C 0.03 0.80 5.58 -106.65 -0.60 0.21 16 10 C -0.09 -2.39 8.74 -39.01 -0.34 -2.73 16 11 C -0.20 -4.59 9.24 -39.64 -0.37 -4.96 16 12 C 0.28 6.15 7.64 -155.13 -1.19 4.97 16 13 N -0.75 -12.71 5.50 -60.35 -0.33 -13.04 16 14 C 0.15 1.92 4.27 -4.04 -0.02 1.90 16 15 C -0.10 -0.95 2.30 -90.41 -0.21 -1.15 16 16 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 17 C -0.13 -0.87 5.32 -26.59 -0.14 -1.02 16 18 C 0.11 0.63 7.17 -4.48 -0.03 0.60 16 19 N -0.72 -6.09 5.45 -61.39 -0.33 -6.43 16 20 C 0.52 6.27 7.71 -11.87 -0.09 6.17 16 21 O -0.56 -9.20 17.78 5.56 0.10 -9.10 16 22 C -0.13 -1.43 5.09 -28.11 -0.14 -1.57 16 23 N -0.52 -12.69 10.37 -11.79 -0.12 -12.81 16 24 C 0.01 0.29 10.97 -16.75 -0.18 0.11 16 25 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 26 H 0.13 3.27 6.23 -52.49 -0.33 2.94 16 27 H 0.10 1.91 6.64 -52.49 -0.35 1.56 16 28 H 0.39 6.29 7.89 -40.82 -0.32 5.96 16 29 H 0.05 0.68 7.90 -51.93 -0.41 0.27 16 30 H 0.05 0.70 7.87 -51.92 -0.41 0.29 16 31 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.40 2.93 8.80 -40.82 -0.36 2.57 16 36 H 0.10 1.16 8.07 -51.93 -0.42 0.74 16 37 H 0.10 1.27 7.50 -51.93 -0.39 0.88 16 38 H 0.13 2.97 8.06 -52.48 -0.42 2.54 16 LS Contribution 315.09 15.07 4.75 4.75 Total: -1.00 -31.39 315.09 -9.17 -40.56 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.07 Total: 10.65 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -3.74 Total: -8.05 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.18 Total: -52.29 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.10 Total: -9.10 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.39 -9.17 -40.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162324919.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.823 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds