Wall clock time and date at job start Mon Mar 30 2020 01:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86799 * 119.99838 * 2 1 4 4 H 1.48498 * 109.47399 * 265.16951 * 3 2 1 5 5 H 1.48498 * 109.47234 * 25.17082 * 3 2 1 6 6 H 1.48507 * 109.46801 * 145.16790 * 3 2 1 7 7 C 1.39873 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99748 * 163.01845 * 7 2 1 9 9 C 1.41192 * 120.00101 * 343.02429 * 7 2 1 10 10 C 1.41329 * 120.57124 * 335.40655 * 9 7 2 11 11 C 1.36564 * 118.40803 * 179.77262 * 10 9 7 12 12 C 1.39705 * 119.49431 * 0.52364 * 11 10 9 13 13 N 1.38369 * 119.43248 * 179.73441 * 12 11 10 14 14 C 1.46503 * 119.99900 * 359.97438 * 13 12 11 15 15 C 1.53000 * 109.47262 * 179.97438 * 14 13 12 16 16 H 1.08997 * 109.66632 * 55.49877 * 15 14 13 17 17 C 1.53342 * 109.67459 * 176.03617 * 15 14 13 18 18 C 1.52931 * 108.66451 * 187.28017 * 17 15 14 19 19 N 1.45754 * 110.47720 * 309.21951 * 18 17 15 20 20 C 1.33354 * 124.10918 * 19.10623 * 19 18 17 21 21 O 1.21275 * 118.24818 * 177.73346 * 20 19 18 22 22 C 1.50174 * 123.50379 * 357.76022 * 20 19 18 23 23 N 1.32739 * 121.13785 * 359.72095 * 12 11 10 24 24 C 1.31483 * 121.73537 * 359.97438 * 23 12 11 25 25 H 0.96995 * 120.00195 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.79132 * 0.02562 * 10 9 7 27 27 H 1.08000 * 120.24890 * 180.23790 * 11 10 9 28 28 H 0.96994 * 120.00052 * 179.97438 * 13 12 11 29 29 H 1.09000 * 109.47255 * 300.00685 * 14 13 12 30 30 H 1.09011 * 109.47125 * 59.99824 * 14 13 12 31 31 H 1.09009 * 109.60507 * 307.02301 * 17 15 14 32 32 H 1.08997 * 109.60648 * 67.50703 * 17 15 14 33 33 H 1.08999 * 109.29469 * 188.91742 * 18 17 15 34 34 H 1.08998 * 109.14964 * 69.42501 * 18 17 15 35 35 H 0.96999 * 117.94701 * 199.09405 * 19 18 17 36 36 H 1.09003 * 109.40182 * 257.44682 * 22 20 19 37 37 H 1.09001 * 109.33086 * 137.66644 * 22 20 19 38 38 H 1.08003 * 119.82072 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.5926 1.9875 -1.3951 5 1 1.3931 2.6800 0.5955 6 1 3.4857 1.4718 0.7997 7 6 2.0084 -1.2113 -0.0005 8 1 3.0531 -1.2315 -0.2737 9 6 1.3486 -2.4076 0.3559 10 6 0.2034 -2.3778 1.1836 11 6 -0.4028 -3.5607 1.4969 12 6 0.1266 -4.7563 1.0050 13 7 -0.4854 -5.9546 1.3278 14 6 -1.6777 -5.9622 2.1790 15 6 -2.1521 -7.4029 2.3795 16 1 -1.3374 -8.0047 2.7823 17 6 -3.3398 -7.4252 3.3491 18 6 -3.6784 -8.8805 3.6750 19 7 -3.8184 -9.6580 2.4502 20 6 -3.3288 -9.2846 1.2673 21 8 -3.4712 -10.0342 0.3247 22 6 -2.6099 -7.9858 1.0403 23 7 1.2065 -4.7627 0.2331 24 6 1.8233 -3.6510 -0.1024 25 1 -0.4850 0.8400 0.0004 26 1 -0.1854 -1.4415 1.5559 27 1 -1.2820 -3.5722 2.1239 28 1 -0.1250 -6.7896 0.9905 29 1 -1.4366 -5.5207 3.1460 30 1 -2.4683 -5.3827 1.7021 31 1 -3.0740 -6.8976 4.2653 32 1 -4.2005 -6.9444 2.8843 33 1 -4.6138 -8.9163 4.2334 34 1 -2.8796 -9.3060 4.2825 35 1 -4.2977 -10.4999 2.4985 36 1 -3.2813 -7.2813 0.5493 37 1 -1.7412 -8.1604 0.4055 38 1 2.6995 -3.6921 -0.7326 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162324919.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:32 Heat of formation + Delta-G solvation = -38.315002 kcal Electronic energy + Delta-G solvation = -20342.614988 eV Core-core repulsion = 17182.939412 eV Total energy + Delta-G solvation = -3159.675575 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.35323 -40.33582 -38.20499 -36.65076 -35.54274 -33.74414 -32.47513 -30.89344 -30.50982 -28.04972 -26.22727 -24.40276 -23.91118 -22.66284 -21.94452 -20.16275 -19.16812 -18.45643 -17.98394 -17.25548 -17.00687 -16.76126 -16.41872 -15.71676 -15.49042 -15.27500 -14.96664 -14.69491 -14.56216 -14.32856 -13.74253 -13.55344 -13.44284 -13.42447 -13.01084 -12.75579 -12.71826 -12.23036 -12.19764 -11.88393 -11.81674 -11.62271 -11.18467 -10.85283 -10.41139 -10.13040 -10.05436 -9.89931 -8.65155 -8.38120 -6.11353 0.91719 1.14760 1.42717 1.53395 1.57661 1.60170 2.26139 2.35105 2.68828 2.84003 3.52371 3.69744 3.81327 3.82901 3.87789 4.24684 4.37418 4.42928 4.51778 4.63142 4.68394 4.76920 4.82729 4.84728 4.94682 4.96963 5.03567 5.13066 5.30040 5.35797 5.43485 5.60618 5.85080 5.90845 6.00629 6.31996 6.51051 6.66882 6.85292 6.94643 7.15588 7.19353 7.87746 8.41253 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.041470 B = 0.003165 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.018249 B = 8845.625190 C = 9128.969130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.494 4.494 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.107 4.107 11 C -0.205 4.205 12 C 0.286 3.714 13 N -0.737 5.737 14 C 0.145 3.855 15 C -0.086 4.086 16 H 0.090 0.910 17 C -0.128 4.128 18 C 0.108 3.892 19 N -0.710 5.710 20 C 0.519 3.481 21 O -0.614 6.614 22 C -0.128 4.128 23 N -0.540 5.540 24 C -0.004 4.004 25 H 0.286 0.714 26 H 0.116 0.884 27 H 0.128 0.872 28 H 0.393 0.607 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.404 0.596 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.177 -10.519 11.608 18.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.525 4.525 8 H 0.094 0.906 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.229 4.229 12 C 0.051 3.949 13 N -0.376 5.376 14 C 0.021 3.979 15 C -0.105 4.105 16 H 0.108 0.892 17 C -0.166 4.166 18 C -0.015 4.015 19 N -0.361 5.361 20 C 0.307 3.693 21 O -0.498 6.498 22 C -0.168 4.168 23 N -0.257 5.257 24 C -0.161 4.161 25 H 0.097 0.903 26 H 0.134 0.866 27 H 0.146 0.854 28 H 0.228 0.772 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.130 0.870 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.239 0.761 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.151 -11.217 10.949 18.151 hybrid contribution 0.092 1.002 -0.312 1.053 sum -9.059 -10.216 10.637 17.308 Atomic orbital electron populations 1.69858 1.08794 1.30317 1.37484 1.26656 0.95500 1.04231 0.91494 0.85231 0.78999 0.76124 0.79419 1.19010 1.19191 1.18432 1.19543 0.97935 0.92026 1.42975 0.90634 1.18640 0.94492 0.94210 0.93308 1.21331 0.97441 0.97142 0.97507 1.21044 1.03113 0.92054 1.06642 1.18133 0.92234 0.86996 0.97549 1.43781 1.31597 1.04113 1.58070 1.21317 0.86133 0.96393 0.94102 1.21393 0.99465 0.95123 0.94547 0.89166 1.21927 0.97166 0.96661 1.00818 1.21670 1.04252 0.90776 0.84762 1.45515 1.56250 1.25578 1.08710 1.20421 0.78073 0.88336 0.82424 1.90737 1.61360 1.55122 1.42537 1.21674 1.01313 0.93812 0.99973 1.66601 1.10043 1.32538 1.16476 1.22330 1.02165 0.87535 1.04080 0.90328 0.86628 0.85450 0.77226 0.91593 0.92980 0.86963 0.90316 0.87393 0.89885 0.76070 0.88073 0.89446 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.34 10.94 21.82 0.24 -43.10 16 2 C 0.03 1.72 5.18 85.23 0.44 2.16 16 3 Si 0.98 38.09 29.59 68.60 2.03 40.12 16 4 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.27 -9.82 7.11 99.48 0.71 -9.12 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 7 C -0.49 -26.60 9.06 23.39 0.21 -26.39 16 8 H 0.08 3.92 7.90 -2.91 -0.02 3.90 16 9 C 0.00 -0.07 5.58 -21.18 -0.12 -0.19 16 10 C -0.11 -5.52 8.74 22.64 0.20 -5.33 16 11 C -0.20 -9.12 9.24 22.23 0.21 -8.91 16 12 C 0.29 12.48 7.64 133.32 1.02 13.49 16 13 N -0.74 -23.94 5.50 -344.85 -1.90 -25.84 16 14 C 0.14 3.31 4.27 86.38 0.37 3.68 16 15 C -0.09 -1.38 2.30 -10.66 -0.02 -1.41 16 16 H 0.09 1.40 8.13 -2.39 -0.02 1.38 16 17 C -0.13 -1.19 5.32 30.69 0.16 -1.02 16 18 C 0.11 0.77 7.17 86.50 0.62 1.39 16 19 N -0.71 -10.17 5.45 -467.31 -2.55 -12.71 16 20 C 0.52 11.96 7.71 87.71 0.68 12.63 16 21 O -0.61 -20.38 17.78 -3.01 -0.05 -20.43 16 22 C -0.13 -2.68 5.09 29.70 0.15 -2.53 16 23 N -0.54 -26.42 10.37 -191.20 -1.98 -28.41 16 24 C 0.00 -0.23 10.97 85.36 0.94 0.71 16 25 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 26 H 0.12 6.12 6.23 -2.91 -0.02 6.10 16 27 H 0.13 4.76 6.64 -2.91 -0.02 4.74 16 28 H 0.39 12.24 7.89 -92.71 -0.73 11.51 16 29 H 0.07 1.42 7.90 -2.39 -0.02 1.41 16 30 H 0.05 1.25 7.87 -2.38 -0.02 1.23 16 31 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.08 0.77 8.12 -2.39 -0.02 0.75 16 33 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.08 0.42 8.14 -2.39 -0.02 0.41 16 35 H 0.40 5.03 8.80 -92.71 -0.82 4.22 16 36 H 0.10 2.17 8.07 -2.39 -0.02 2.15 16 37 H 0.09 2.12 7.50 -2.39 -0.02 2.10 16 38 H 0.13 6.39 8.06 -2.91 -0.02 6.37 16 Total: -1.00 -70.18 315.09 0.19 -69.99 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: -0.45 Total: 32.09 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 4.85 Total: -11.72 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -6.19 Total: -110.05 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.05 Total: -20.43 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Total: -70.18 0.19 -69.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162324919.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.677 kcal (2) G-P(sol) polarization free energy of solvation -70.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds