Wall clock time and date at job start Mon Mar 30 2020 02:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86799 * 120.00156 * 2 1 4 4 H 1.48499 * 109.46769 * 274.97865 * 3 2 1 5 5 H 1.48503 * 109.47405 * 34.97650 * 3 2 1 6 6 H 1.48496 * 109.47318 * 154.98070 * 3 2 1 7 7 C 1.40021 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00260 * 186.29388 * 7 2 1 9 9 C 1.41320 * 119.99898 * 6.29588 * 7 2 1 10 10 C 1.40596 * 119.78539 * 173.66075 * 9 7 2 11 11 C 1.38343 * 119.14564 * 180.02562 * 10 9 7 12 12 C 1.38630 * 118.68202 * 359.74837 * 11 10 9 13 13 C 1.39761 * 119.49458 * 0.49476 * 12 11 10 14 14 N 1.38826 * 119.58543 * 179.77090 * 13 12 11 15 15 C 1.46499 * 120.00141 * 359.72456 * 14 13 12 16 16 C 1.52997 * 109.47136 * 179.97438 * 15 14 13 17 17 H 1.08997 * 109.66941 * 55.00158 * 16 15 14 18 18 C 1.53339 * 109.70359 * 175.51821 * 16 15 14 19 19 C 1.52938 * 108.66565 * 187.29469 * 18 16 15 20 20 N 1.45747 * 110.47897 * 309.22100 * 19 18 16 21 21 C 1.33359 * 124.10704 * 19.10945 * 20 19 18 22 22 O 1.21279 * 118.24172 * 177.72965 * 21 20 19 23 23 C 1.50171 * 123.50860 * 357.75593 * 21 20 19 24 24 N 1.31978 * 120.82613 * 359.49312 * 13 12 11 25 25 H 0.97006 * 119.99427 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.42011 * 0.04552 * 10 9 7 27 27 H 1.08004 * 120.65216 * 179.97438 * 11 10 9 28 28 H 1.07997 * 120.25581 * 180.27190 * 12 11 10 29 29 H 0.97000 * 119.99839 * 179.72702 * 14 13 12 30 30 H 1.09008 * 109.47068 * 60.00299 * 15 14 13 31 31 H 1.08991 * 109.47468 * 300.00613 * 15 14 13 32 32 H 1.09001 * 109.60542 * 307.04224 * 18 16 15 33 33 H 1.09006 * 109.60651 * 67.52761 * 18 16 15 34 34 H 1.08996 * 109.29333 * 188.91461 * 19 18 16 35 35 H 1.09005 * 109.14549 * 69.43162 * 19 18 16 36 36 H 0.97000 * 117.94995 * 199.08255 * 20 19 18 37 37 H 1.09006 * 109.39997 * 257.45595 * 23 21 20 38 38 H 1.09001 * 109.33134 * 137.66832 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3837 2.1071 -1.3948 5 1 1.4955 2.6201 0.8026 6 1 3.5877 1.4121 0.5921 7 6 2.0075 -1.2126 0.0005 8 1 3.0826 -1.2154 0.1031 9 6 1.3073 -2.4328 -0.1331 10 6 2.0212 -3.6368 -0.2663 11 6 1.3223 -4.8235 -0.3969 12 6 -0.0634 -4.7843 -0.3864 13 6 -0.7160 -3.5553 -0.2558 14 7 -2.1036 -3.5134 -0.2498 15 6 -2.8745 -4.7516 -0.3861 16 6 -4.3695 -4.4284 -0.3483 17 1 -4.6039 -3.6866 -1.1117 18 6 -5.1809 -5.7046 -0.6022 19 6 -6.6564 -5.3269 -0.7411 20 7 -7.0775 -4.4953 0.3793 21 6 -6.2385 -3.8250 1.1700 22 8 -6.7073 -3.1307 2.0469 23 6 -4.7443 -3.8834 1.0321 24 7 -0.0296 -2.4348 -0.1325 25 1 -0.4849 0.8401 -0.0004 26 1 3.1012 -3.6350 -0.2664 27 1 1.8460 -5.7623 -0.5012 28 1 -0.6343 -5.6960 -0.4821 29 1 -2.5627 -2.6641 -0.1556 30 1 -2.6280 -5.4253 0.4347 31 1 -2.6296 -5.2297 -1.3344 32 1 -4.8371 -6.1799 -1.5208 33 1 -5.0560 -6.3902 0.2360 34 1 -7.2598 -6.2343 -0.7631 35 1 -6.7986 -4.7770 -1.6714 36 1 -8.0277 -4.4246 0.5611 37 1 -4.3348 -4.5367 1.8026 38 1 -4.3316 -2.8814 1.1500 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162333024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:47 Heat of formation + Delta-G solvation = -9.450113 kcal Electronic energy + Delta-G solvation = -20638.589952 eV Core-core repulsion = 17480.166052 eV Total energy + Delta-G solvation = -3158.423900 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.40502 -38.31002 -37.05259 -35.29634 -33.57259 -32.49861 -30.35996 -29.81835 -28.88251 -26.25249 -25.34410 -23.62420 -21.90892 -21.11882 -20.26727 -19.36106 -17.50431 -17.35220 -16.43043 -16.06442 -15.56753 -14.97130 -14.76516 -14.63203 -14.42832 -14.01345 -13.52474 -13.34719 -13.13234 -12.99445 -12.61944 -12.03338 -11.92909 -11.83703 -11.32154 -11.22424 -11.03903 -10.97705 -10.93439 -10.61083 -10.41350 -9.90996 -9.80149 -9.45822 -9.27364 -8.88519 -7.90093 -7.49653 -6.51769 -6.32489 -4.46001 2.57963 2.88697 3.13155 3.13981 3.16520 3.24382 3.31164 4.00036 4.05537 4.40485 4.50567 4.56560 4.70703 4.85486 5.10492 5.15552 5.24358 5.46478 5.55113 5.59224 5.78285 5.86574 5.96799 6.07958 6.15827 6.19657 6.57261 6.60555 6.86051 6.90008 6.95233 7.16957 7.26300 7.60032 7.81689 7.92068 8.11175 8.17966 8.37019 8.67669 8.81625 9.12567 10.25607 10.41553 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020652 B = 0.004238 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.505674 B = 6606.067680 C = 7680.474603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.435 4.435 8 H 0.083 0.917 9 C 0.293 3.707 10 C -0.316 4.316 11 C -0.033 4.033 12 C -0.368 4.368 13 C 0.411 3.589 14 N -0.740 5.740 15 C 0.149 3.851 16 C -0.102 4.102 17 H 0.085 0.915 18 C -0.130 4.130 19 C 0.112 3.888 20 N -0.724 5.724 21 C 0.522 3.478 22 O -0.559 6.559 23 C -0.130 4.130 24 N -0.532 5.532 25 H 0.270 0.730 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.395 0.605 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.396 0.604 37 H 0.103 0.897 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.558 -9.269 -3.071 15.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.153 4.153 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.467 4.467 8 H 0.101 0.899 9 C 0.166 3.834 10 C -0.339 4.339 11 C -0.057 4.057 12 C -0.394 4.394 13 C 0.171 3.829 14 N -0.377 5.377 15 C 0.023 3.977 16 C -0.121 4.121 17 H 0.103 0.897 18 C -0.168 4.168 19 C -0.013 4.013 20 N -0.376 5.376 21 C 0.309 3.691 22 O -0.438 6.438 23 C -0.169 4.169 24 N -0.253 5.253 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.230 0.770 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.231 0.769 37 H 0.121 0.879 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.167 -8.202 -2.589 14.900 hybrid contribution 0.297 0.104 -0.141 0.345 sum -11.870 -8.098 -2.730 14.626 Atomic orbital electron populations 1.70149 1.07163 1.27365 1.29075 1.26037 0.94835 1.00902 0.93535 0.86369 0.80608 0.81180 0.78951 1.19595 1.20225 1.18563 1.19589 0.94576 0.89554 1.43029 0.89883 1.18200 0.86860 0.91778 0.86603 1.21544 0.98433 0.93850 1.20060 1.20590 0.93491 0.96308 0.95296 1.20587 0.94566 0.95812 1.28395 1.18504 0.84232 0.90300 0.89888 1.44124 1.02816 1.07550 1.83228 1.21056 0.87893 0.88006 1.00723 1.21501 0.95633 0.97818 0.97109 0.89702 1.21882 0.93349 0.97681 1.03904 1.21379 0.96255 0.94613 0.89011 1.45503 1.10329 1.49573 1.32243 1.20329 0.90122 0.78128 0.80493 1.90761 1.78058 1.40519 1.34424 1.21739 0.90871 1.05469 0.98867 1.68205 1.07908 1.24231 1.24974 0.91929 0.88737 0.88991 0.89245 0.77000 0.92830 0.92664 0.89246 0.90556 0.90493 0.91542 0.76866 0.87888 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.14 11.49 55.55 0.64 -18.50 16 2 C 0.07 1.86 5.49 -17.35 -0.10 1.76 16 3 Si 0.90 18.88 29.56 -169.99 -5.03 13.86 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.44 -11.85 9.13 -37.74 -0.34 -12.20 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.71 16 9 C 0.29 8.16 6.54 -85.00 -0.56 7.60 16 10 C -0.32 -7.99 9.83 -38.65 -0.38 -8.37 16 11 C -0.03 -0.75 10.15 -39.40 -0.40 -1.15 16 12 C -0.37 -8.30 9.34 -38.87 -0.36 -8.67 16 13 C 0.41 9.83 7.65 -155.31 -1.19 8.64 16 14 N -0.74 -14.03 5.53 -60.40 -0.33 -14.36 16 15 C 0.15 2.05 4.28 -4.04 -0.02 2.03 16 16 C -0.10 -1.07 2.29 -90.41 -0.21 -1.27 16 17 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 18 C -0.13 -0.95 5.32 -26.59 -0.14 -1.09 16 19 C 0.11 0.71 7.17 -4.48 -0.03 0.68 16 20 N -0.72 -6.68 5.45 -61.38 -0.33 -7.02 16 21 C 0.52 6.79 7.71 -11.87 -0.09 6.70 16 22 O -0.56 -9.77 17.78 5.56 0.10 -9.67 16 23 C -0.13 -1.59 5.10 -28.10 -0.14 -1.73 16 24 N -0.53 -14.62 7.92 -10.33 -0.08 -14.70 16 25 H 0.27 6.56 8.29 -40.82 -0.34 6.23 16 26 H 0.09 2.23 8.06 -52.48 -0.42 1.80 16 27 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 28 H 0.09 1.76 6.68 -52.49 -0.35 1.41 16 29 H 0.40 7.58 7.92 -40.82 -0.32 7.26 16 30 H 0.05 0.74 7.87 -51.92 -0.41 0.33 16 31 H 0.06 0.75 7.93 -51.93 -0.41 0.33 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.40 3.22 8.80 -40.82 -0.36 2.86 16 37 H 0.10 1.23 8.07 -51.93 -0.42 0.82 16 38 H 0.11 1.49 7.53 -51.93 -0.39 1.10 16 LS Contribution 316.79 15.07 4.77 4.77 Total: -1.00 -32.87 316.79 -9.39 -42.26 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -5.17 Total: 10.41 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -3.96 Total: -7.06 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.11 Total: -54.58 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.10 Total: -9.67 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.87 -9.39 -42.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162333024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.810 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds