Wall clock time and date at job start Mon Mar 30 2020 02:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86799 * 120.00156 * 2 1 4 4 H 1.48499 * 109.46769 * 274.97865 * 3 2 1 5 5 H 1.48503 * 109.47405 * 34.97650 * 3 2 1 6 6 H 1.48496 * 109.47318 * 154.98070 * 3 2 1 7 7 C 1.40021 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00260 * 186.29388 * 7 2 1 9 9 C 1.41320 * 119.99898 * 6.29588 * 7 2 1 10 10 C 1.40596 * 119.78539 * 173.66075 * 9 7 2 11 11 C 1.38343 * 119.14564 * 180.02562 * 10 9 7 12 12 C 1.38630 * 118.68202 * 359.74837 * 11 10 9 13 13 C 1.39761 * 119.49458 * 0.49476 * 12 11 10 14 14 N 1.38826 * 119.58543 * 179.77090 * 13 12 11 15 15 C 1.46499 * 120.00141 * 359.72456 * 14 13 12 16 16 C 1.52997 * 109.47136 * 179.97438 * 15 14 13 17 17 H 1.08997 * 109.66941 * 55.00158 * 16 15 14 18 18 C 1.53339 * 109.70359 * 175.51821 * 16 15 14 19 19 C 1.52938 * 108.66565 * 187.29469 * 18 16 15 20 20 N 1.45747 * 110.47897 * 309.22100 * 19 18 16 21 21 C 1.33359 * 124.10704 * 19.10945 * 20 19 18 22 22 O 1.21279 * 118.24172 * 177.72965 * 21 20 19 23 23 C 1.50171 * 123.50860 * 357.75593 * 21 20 19 24 24 N 1.31978 * 120.82613 * 359.49312 * 13 12 11 25 25 H 0.97006 * 119.99427 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.42011 * 0.04552 * 10 9 7 27 27 H 1.08004 * 120.65216 * 179.97438 * 11 10 9 28 28 H 1.07997 * 120.25581 * 180.27190 * 12 11 10 29 29 H 0.97000 * 119.99839 * 179.72702 * 14 13 12 30 30 H 1.09008 * 109.47068 * 60.00299 * 15 14 13 31 31 H 1.08991 * 109.47468 * 300.00613 * 15 14 13 32 32 H 1.09001 * 109.60542 * 307.04224 * 18 16 15 33 33 H 1.09006 * 109.60651 * 67.52761 * 18 16 15 34 34 H 1.08996 * 109.29333 * 188.91461 * 19 18 16 35 35 H 1.09005 * 109.14549 * 69.43162 * 19 18 16 36 36 H 0.97000 * 117.94995 * 199.08255 * 20 19 18 37 37 H 1.09006 * 109.39997 * 257.45595 * 23 21 20 38 38 H 1.09001 * 109.33134 * 137.66832 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3837 2.1071 -1.3948 5 1 1.4955 2.6201 0.8026 6 1 3.5877 1.4121 0.5921 7 6 2.0075 -1.2126 0.0005 8 1 3.0826 -1.2154 0.1031 9 6 1.3073 -2.4328 -0.1331 10 6 2.0212 -3.6368 -0.2663 11 6 1.3223 -4.8235 -0.3969 12 6 -0.0634 -4.7843 -0.3864 13 6 -0.7160 -3.5553 -0.2558 14 7 -2.1036 -3.5134 -0.2498 15 6 -2.8745 -4.7516 -0.3861 16 6 -4.3695 -4.4284 -0.3483 17 1 -4.6039 -3.6866 -1.1117 18 6 -5.1809 -5.7046 -0.6022 19 6 -6.6564 -5.3269 -0.7411 20 7 -7.0775 -4.4953 0.3793 21 6 -6.2385 -3.8250 1.1700 22 8 -6.7073 -3.1307 2.0469 23 6 -4.7443 -3.8834 1.0321 24 7 -0.0296 -2.4348 -0.1325 25 1 -0.4849 0.8401 -0.0004 26 1 3.1012 -3.6350 -0.2664 27 1 1.8460 -5.7623 -0.5012 28 1 -0.6343 -5.6960 -0.4821 29 1 -2.5627 -2.6641 -0.1556 30 1 -2.6280 -5.4253 0.4347 31 1 -2.6296 -5.2297 -1.3344 32 1 -4.8371 -6.1799 -1.5208 33 1 -5.0560 -6.3902 0.2360 34 1 -7.2598 -6.2343 -0.7631 35 1 -6.7986 -4.7770 -1.6714 36 1 -8.0277 -4.4246 0.5611 37 1 -4.3348 -4.5367 1.8026 38 1 -4.3316 -2.8814 1.1500 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162333024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:47 Heat of formation + Delta-G solvation = -32.378218 kcal Electronic energy + Delta-G solvation = -20639.584189 eV Core-core repulsion = 17480.166052 eV Total energy + Delta-G solvation = -3159.418137 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.36069 -40.07636 -38.18887 -36.55586 -35.27858 -33.84532 -32.22060 -30.77937 -30.46447 -27.53031 -27.15243 -24.46771 -23.50371 -22.55715 -21.88556 -20.17644 -19.23274 -18.44494 -17.89655 -17.13838 -16.71923 -16.43727 -16.40674 -15.95469 -15.66350 -15.19441 -14.91669 -14.67510 -14.49853 -14.35264 -13.85500 -13.57327 -13.38176 -12.88953 -12.72861 -12.71158 -12.57404 -12.23814 -12.19673 -11.88817 -11.83234 -11.68888 -11.25205 -10.86649 -10.61198 -10.06704 -9.80248 -9.41270 -8.25209 -8.22405 -6.46025 1.08183 1.37844 1.41481 1.55430 1.55779 1.58585 2.25457 2.33537 2.70184 2.93815 3.51092 3.68284 3.79830 3.86526 4.08256 4.34648 4.41678 4.42251 4.51519 4.62385 4.73855 4.80409 4.84324 4.94461 4.97233 5.03078 5.03675 5.11357 5.17183 5.33254 5.40738 5.74668 5.84705 5.99853 6.10683 6.24800 6.30117 6.59873 6.85551 6.97795 7.17971 7.24305 8.37198 8.52880 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020652 B = 0.004238 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.505674 B = 6606.067680 C = 7680.474603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.028 3.972 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.475 4.475 8 H 0.085 0.915 9 C 0.260 3.740 10 C -0.345 4.345 11 C -0.030 4.030 12 C -0.363 4.363 13 C 0.392 3.608 14 N -0.735 5.735 15 C 0.146 3.854 16 C -0.088 4.088 17 H 0.083 0.917 18 C -0.124 4.124 19 C 0.107 3.893 20 N -0.709 5.709 21 C 0.520 3.480 22 O -0.614 6.614 23 C -0.127 4.127 24 N -0.568 5.568 25 H 0.275 0.725 26 H 0.100 0.900 27 H 0.130 0.870 28 H 0.124 0.876 29 H 0.390 0.610 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.404 0.596 37 H 0.104 0.896 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.482 -11.096 -4.281 17.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.194 4.194 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.507 4.507 8 H 0.103 0.897 9 C 0.132 3.868 10 C -0.368 4.368 11 C -0.055 4.055 12 C -0.389 4.389 13 C 0.152 3.848 14 N -0.371 5.371 15 C 0.022 3.978 16 C -0.107 4.107 17 H 0.101 0.899 18 C -0.162 4.162 19 C -0.015 4.015 20 N -0.360 5.360 21 C 0.308 3.692 22 O -0.497 6.497 23 C -0.167 4.167 24 N -0.291 5.291 25 H 0.085 0.915 26 H 0.118 0.882 27 H 0.148 0.852 28 H 0.142 0.858 29 H 0.224 0.776 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.101 0.899 34 H 0.129 0.871 35 H 0.099 0.901 36 H 0.240 0.760 37 H 0.122 0.878 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.139 -10.108 -3.844 17.017 hybrid contribution 0.481 0.487 0.195 0.712 sum -12.658 -9.622 -3.649 16.313 Atomic orbital electron populations 1.70250 1.08767 1.28570 1.30002 1.26923 0.95683 1.04276 0.92505 0.85179 0.79152 0.76070 0.79152 1.18916 1.19463 1.17933 1.19930 0.94971 0.90755 1.45049 0.89701 1.18661 0.87689 0.93080 0.87337 1.21695 0.98944 0.94270 1.21926 1.21024 0.93920 0.96992 0.93530 1.20978 0.94836 0.96520 1.26557 1.19005 0.86100 0.90285 0.89457 1.44370 1.01382 1.09320 1.82005 1.21352 0.89112 0.85941 1.01412 1.21412 0.93963 0.99689 0.95683 0.89879 1.21916 0.93198 0.95729 1.05397 1.21689 0.96113 0.95655 0.88078 1.45495 1.10343 1.48327 1.31815 1.20388 0.90521 0.77957 0.80344 1.90735 1.78823 1.43179 1.37001 1.21657 0.90660 1.04148 1.00267 1.68173 1.08206 1.26294 1.26414 0.91469 0.88168 0.85234 0.85803 0.77569 0.92308 0.91354 0.86822 0.89927 0.87052 0.90143 0.76018 0.87793 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.69 11.49 21.84 0.25 -41.44 16 2 C 0.03 1.46 5.49 85.29 0.47 1.93 16 3 Si 0.98 39.56 29.56 68.60 2.03 41.59 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 6 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 7 C -0.47 -26.84 9.13 23.46 0.21 -26.63 16 8 H 0.08 4.52 7.85 -2.91 -0.02 4.50 16 9 C 0.26 14.97 6.54 40.19 0.26 15.23 16 10 C -0.35 -17.71 9.83 22.87 0.22 -17.49 16 11 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 12 C -0.36 -15.78 9.34 22.73 0.21 -15.57 16 13 C 0.39 18.81 7.65 133.40 1.02 19.83 16 14 N -0.74 -27.73 5.53 -345.00 -1.91 -29.63 16 15 C 0.15 3.69 4.28 86.38 0.37 4.06 16 16 C -0.09 -1.68 2.29 -10.66 -0.02 -1.70 16 17 H 0.08 1.65 8.13 -2.39 -0.02 1.63 16 18 C -0.12 -1.31 5.32 30.69 0.16 -1.15 16 19 C 0.11 0.92 7.17 86.50 0.62 1.54 16 20 N -0.71 -11.51 5.45 -467.30 -2.55 -14.06 16 21 C 0.52 13.33 7.71 87.71 0.68 14.00 16 22 O -0.61 -22.03 17.78 -3.03 -0.05 -22.08 16 23 C -0.13 -3.10 5.10 29.71 0.15 -2.94 16 24 N -0.57 -32.17 7.92 -186.58 -1.48 -33.65 16 25 H 0.27 13.81 8.29 -92.70 -0.77 13.04 16 26 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 27 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 28 H 0.12 4.43 6.68 -2.91 -0.02 4.41 16 29 H 0.39 15.38 7.92 -92.71 -0.73 14.65 16 30 H 0.06 1.46 7.87 -2.38 -0.02 1.44 16 31 H 0.07 1.61 7.93 -2.39 -0.02 1.59 16 32 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 0.84 8.12 -2.38 -0.02 0.82 16 34 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.40 5.71 8.80 -92.71 -0.82 4.89 16 37 H 0.10 2.47 8.07 -2.38 -0.02 2.45 16 38 H 0.08 2.36 7.53 -2.39 -0.02 2.34 16 Total: -1.00 -75.33 316.79 0.42 -74.90 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: -0.46 Total: 34.38 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 4.59 Total: -10.01 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -5.68 Total: -118.78 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.05 Total: -22.08 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -75.33 0.42 -74.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162333024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.525 kcal (2) G-P(sol) polarization free energy of solvation -75.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds