Wall clock time and date at job start Mon Mar 30 2020 02:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86797 * 119.99807 * 2 1 4 4 H 1.48498 * 109.47515 * 240.00457 * 3 2 1 5 5 H 1.48498 * 109.47066 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47226 * 120.00603 * 3 2 1 7 7 C 1.40024 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00205 * 179.97438 * 7 2 1 9 9 C 1.41314 * 120.00007 * 359.97438 * 7 2 1 10 10 C 1.40591 * 119.78521 * 180.02562 * 9 7 2 11 11 C 1.38347 * 119.14793 * 179.97438 * 10 9 7 12 12 C 1.38638 * 118.68368 * 0.02562 * 11 10 9 13 13 C 1.39759 * 119.48598 * 359.97438 * 12 11 10 14 14 N 1.38835 * 119.57817 * 179.97438 * 13 12 11 15 15 C 1.46493 * 120.00071 * 359.72029 * 14 13 12 16 16 C 1.53003 * 109.46716 * 180.02562 * 15 14 13 17 17 H 1.08995 * 109.67614 * 304.50394 * 16 15 14 18 18 C 1.53351 * 109.67089 * 183.96879 * 16 15 14 19 19 C 1.52910 * 108.68528 * 172.75224 * 18 16 15 20 20 N 1.45752 * 110.49756 * 50.72162 * 19 18 16 21 21 C 1.33361 * 124.10561 * 340.96338 * 20 19 18 22 22 O 1.21278 * 118.24463 * 182.17946 * 21 20 19 23 23 C 1.50177 * 123.51001 * 2.20259 * 21 20 19 24 24 N 1.31972 * 120.83542 * 0.25471 * 13 12 11 25 25 H 0.96996 * 120.00665 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.42921 * 359.97438 * 10 9 7 27 27 H 1.08007 * 120.66203 * 180.02562 * 11 10 9 28 28 H 1.08002 * 120.25865 * 180.02562 * 12 11 10 29 29 H 0.97000 * 119.99129 * 180.02562 * 14 13 12 30 30 H 1.08993 * 109.47301 * 300.00244 * 15 14 13 31 31 H 1.09001 * 109.46950 * 60.00633 * 15 14 13 32 32 H 1.09005 * 109.60290 * 292.49204 * 18 16 15 33 33 H 1.08996 * 109.60517 * 52.98055 * 18 16 15 34 34 H 1.09006 * 109.28217 * 290.41575 * 19 18 16 35 35 H 1.08994 * 109.30985 * 171.04517 * 19 18 16 36 36 H 0.96999 * 117.95008 * 160.94233 * 20 19 18 37 37 H 1.08999 * 109.39925 * 222.29049 * 23 21 20 38 38 H 1.08993 * 109.40134 * 102.54163 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0950 1.6966 -1.2125 5 1 1.2763 2.7464 0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3011 -2.4365 -0.0005 10 6 2.0086 -3.6513 -0.0005 11 6 1.3036 -4.8417 0.0000 12 6 -0.0819 -4.7945 0.0000 13 6 -0.7280 -3.5552 0.0000 14 7 -2.1155 -3.5057 -0.0006 15 6 -2.8927 -4.7474 -0.0074 16 6 -4.3861 -4.4143 -0.0072 17 1 -4.6185 -3.7710 0.8415 18 6 -5.2037 -5.7083 0.0857 19 6 -6.6778 -5.3445 0.2668 20 7 -7.0927 -4.3783 -0.7425 21 6 -6.2488 -3.6194 -1.4428 22 8 -6.7124 -2.8206 -2.2288 23 6 -4.7551 -3.7013 -1.3105 24 7 -0.0359 -2.4315 -0.0051 25 1 -0.4851 0.8400 0.0004 26 1 3.0887 -3.6553 -0.0010 27 1 1.8224 -5.7891 0.0004 28 1 -0.6576 -5.7083 0.0008 29 1 -2.5701 -2.6488 -0.0010 30 1 -2.6495 -5.3235 -0.9000 31 1 -2.6506 -5.3325 0.8799 32 1 -5.0797 -6.2858 -0.8305 33 1 -4.8641 -6.2949 0.9393 34 1 -6.8234 -4.9151 1.2581 35 1 -7.2851 -6.2448 0.1748 36 1 -8.0421 -4.2813 -0.9159 37 1 -4.3365 -2.6949 -1.3037 38 1 -4.3468 -4.2563 -2.1550 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162333025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:51 Heat of formation + Delta-G solvation = -9.245311 kcal Electronic energy + Delta-G solvation = -20644.562856 eV Core-core repulsion = 17486.147837 eV Total energy + Delta-G solvation = -3158.415019 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.40290 -38.30640 -37.05093 -35.29572 -33.57205 -32.49435 -30.35353 -29.81832 -28.87926 -26.25340 -25.34237 -23.62245 -21.90705 -21.11706 -20.26310 -19.35951 -17.50414 -17.34938 -16.43167 -16.05914 -15.56563 -14.96744 -14.76803 -14.63243 -14.42512 -14.00960 -13.52643 -13.34499 -13.12767 -12.99088 -12.61753 -12.02251 -11.92529 -11.83332 -11.32070 -11.19767 -11.03501 -10.98934 -10.93366 -10.61646 -10.41002 -9.92067 -9.80319 -9.46476 -9.27224 -8.88164 -7.89917 -7.49605 -6.51691 -6.31058 -4.46114 2.58099 2.90710 3.12480 3.14013 3.14765 3.24797 3.32065 4.00070 4.05787 4.40691 4.50735 4.56532 4.70984 4.86212 5.10554 5.15612 5.24525 5.46605 5.55235 5.59388 5.78451 5.86912 5.97557 6.08105 6.16025 6.20223 6.57533 6.60658 6.86279 6.90235 6.95042 7.17051 7.26617 7.60194 7.81947 7.92426 8.11302 8.17302 8.37214 8.67762 8.81695 9.12842 10.26183 10.41989 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020494 B = 0.004268 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.918261 B = 6558.578475 C = 7673.508632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.435 4.435 8 H 0.082 0.918 9 C 0.293 3.707 10 C -0.316 4.316 11 C -0.032 4.032 12 C -0.368 4.368 13 C 0.411 3.589 14 N -0.740 5.740 15 C 0.149 3.851 16 C -0.102 4.102 17 H 0.085 0.915 18 C -0.130 4.130 19 C 0.112 3.888 20 N -0.724 5.724 21 C 0.522 3.478 22 O -0.559 6.559 23 C -0.130 4.130 24 N -0.531 5.531 25 H 0.270 0.730 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.395 0.605 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.396 0.604 37 H 0.106 0.894 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.620 -9.472 1.960 15.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.153 4.153 3 Si 0.729 3.271 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.467 4.467 8 H 0.100 0.900 9 C 0.166 3.834 10 C -0.339 4.339 11 C -0.057 4.057 12 C -0.394 4.394 13 C 0.171 3.829 14 N -0.377 5.377 15 C 0.023 3.977 16 C -0.121 4.121 17 H 0.103 0.897 18 C -0.168 4.168 19 C -0.013 4.013 20 N -0.376 5.376 21 C 0.309 3.691 22 O -0.438 6.438 23 C -0.170 4.170 24 N -0.253 5.253 25 H 0.082 0.918 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.230 0.770 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.231 0.769 37 H 0.125 0.875 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.229 -8.348 1.594 14.892 hybrid contribution 0.309 0.090 0.036 0.323 sum -11.920 -8.258 1.631 14.592 Atomic orbital electron populations 1.70126 1.07138 1.27493 1.28976 1.26036 0.94852 1.00877 0.93568 0.86442 0.80114 0.80706 0.79816 1.19003 1.20342 1.19030 1.19554 0.94132 0.89433 1.43566 0.89955 1.18187 0.86907 0.91814 0.86529 1.21536 0.98405 0.93496 1.20507 1.20591 0.93476 0.96333 0.95268 1.20587 0.94587 0.95421 1.28819 1.18505 0.84250 0.90272 0.89888 1.44125 1.02793 1.06644 1.84165 1.21056 0.87822 0.87920 1.00878 1.21505 0.95628 0.96947 0.97974 0.89693 1.21875 0.93315 0.97607 1.04000 1.21370 0.96314 0.92110 0.91462 1.45503 1.10297 1.41131 1.40716 1.20326 0.90080 0.79279 0.79376 1.90761 1.78295 1.37199 1.37504 1.21736 0.90893 1.04727 0.99601 1.68206 1.07679 1.24358 1.25041 0.91848 0.88758 0.89003 0.89254 0.77001 0.92855 0.92645 0.90557 0.89240 0.91549 0.90526 0.76866 0.87550 0.87897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.14 11.46 55.55 0.64 -18.50 16 2 C 0.07 1.85 5.50 -17.35 -0.10 1.76 16 3 Si 0.90 18.88 29.56 -169.99 -5.02 13.86 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.43 -11.84 9.14 -37.74 -0.34 -12.18 16 8 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 9 C 0.29 8.16 6.55 -85.00 -0.56 7.60 16 10 C -0.32 -8.01 9.83 -38.65 -0.38 -8.39 16 11 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 12 C -0.37 -8.32 9.34 -38.87 -0.36 -8.69 16 13 C 0.41 9.84 7.65 -155.31 -1.19 8.65 16 14 N -0.74 -14.04 5.52 -60.40 -0.33 -14.37 16 15 C 0.15 2.05 4.28 -4.04 -0.02 2.03 16 16 C -0.10 -1.07 2.30 -90.40 -0.21 -1.28 16 17 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 18 C -0.13 -0.95 5.32 -26.60 -0.14 -1.09 16 19 C 0.11 0.71 7.17 -4.49 -0.03 0.68 16 20 N -0.72 -6.69 5.45 -61.39 -0.33 -7.03 16 21 C 0.52 6.81 7.71 -11.87 -0.09 6.72 16 22 O -0.56 -9.78 17.78 5.56 0.10 -9.68 16 23 C -0.13 -1.59 5.10 -28.10 -0.14 -1.74 16 24 N -0.53 -14.61 7.89 -10.33 -0.08 -14.69 16 25 H 0.27 6.61 8.29 -40.82 -0.34 6.27 16 26 H 0.09 2.22 8.06 -52.48 -0.42 1.80 16 27 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 28 H 0.09 1.76 6.68 -52.49 -0.35 1.41 16 29 H 0.40 7.59 7.88 -40.82 -0.32 7.27 16 30 H 0.05 0.74 7.90 -51.93 -0.41 0.33 16 31 H 0.06 0.75 7.91 -51.93 -0.41 0.34 16 32 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.40 3.22 8.80 -40.82 -0.36 2.87 16 37 H 0.11 1.50 7.49 -51.93 -0.39 1.11 16 38 H 0.10 1.24 8.07 -51.93 -0.42 0.82 16 LS Contribution 316.67 15.07 4.77 4.77 Total: -1.00 -32.84 316.67 -9.39 -42.23 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -5.16 Total: 10.47 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -3.96 Total: -7.07 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.11 Total: -54.59 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.10 Total: -9.68 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.84 -9.39 -42.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162333025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.987 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds