Wall clock time and date at job start Mon Mar 30 2020 02:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86797 * 119.99807 * 2 1 4 4 H 1.48498 * 109.47515 * 240.00457 * 3 2 1 5 5 H 1.48498 * 109.47066 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47226 * 120.00603 * 3 2 1 7 7 C 1.40024 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00205 * 179.97438 * 7 2 1 9 9 C 1.41314 * 120.00007 * 359.97438 * 7 2 1 10 10 C 1.40591 * 119.78521 * 180.02562 * 9 7 2 11 11 C 1.38347 * 119.14793 * 179.97438 * 10 9 7 12 12 C 1.38638 * 118.68368 * 0.02562 * 11 10 9 13 13 C 1.39759 * 119.48598 * 359.97438 * 12 11 10 14 14 N 1.38835 * 119.57817 * 179.97438 * 13 12 11 15 15 C 1.46493 * 120.00071 * 359.72029 * 14 13 12 16 16 C 1.53003 * 109.46716 * 180.02562 * 15 14 13 17 17 H 1.08995 * 109.67614 * 304.50394 * 16 15 14 18 18 C 1.53351 * 109.67089 * 183.96879 * 16 15 14 19 19 C 1.52910 * 108.68528 * 172.75224 * 18 16 15 20 20 N 1.45752 * 110.49756 * 50.72162 * 19 18 16 21 21 C 1.33361 * 124.10561 * 340.96338 * 20 19 18 22 22 O 1.21278 * 118.24463 * 182.17946 * 21 20 19 23 23 C 1.50177 * 123.51001 * 2.20259 * 21 20 19 24 24 N 1.31972 * 120.83542 * 0.25471 * 13 12 11 25 25 H 0.96996 * 120.00665 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.42921 * 359.97438 * 10 9 7 27 27 H 1.08007 * 120.66203 * 180.02562 * 11 10 9 28 28 H 1.08002 * 120.25865 * 180.02562 * 12 11 10 29 29 H 0.97000 * 119.99129 * 180.02562 * 14 13 12 30 30 H 1.08993 * 109.47301 * 300.00244 * 15 14 13 31 31 H 1.09001 * 109.46950 * 60.00633 * 15 14 13 32 32 H 1.09005 * 109.60290 * 292.49204 * 18 16 15 33 33 H 1.08996 * 109.60517 * 52.98055 * 18 16 15 34 34 H 1.09006 * 109.28217 * 290.41575 * 19 18 16 35 35 H 1.08994 * 109.30985 * 171.04517 * 19 18 16 36 36 H 0.96999 * 117.95008 * 160.94233 * 20 19 18 37 37 H 1.08999 * 109.39925 * 222.29049 * 23 21 20 38 38 H 1.08993 * 109.40134 * 102.54163 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0950 1.6966 -1.2125 5 1 1.2763 2.7464 0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3011 -2.4365 -0.0005 10 6 2.0086 -3.6513 -0.0005 11 6 1.3036 -4.8417 0.0000 12 6 -0.0819 -4.7945 0.0000 13 6 -0.7280 -3.5552 0.0000 14 7 -2.1155 -3.5057 -0.0006 15 6 -2.8927 -4.7474 -0.0074 16 6 -4.3861 -4.4143 -0.0072 17 1 -4.6185 -3.7710 0.8415 18 6 -5.2037 -5.7083 0.0857 19 6 -6.6778 -5.3445 0.2668 20 7 -7.0927 -4.3783 -0.7425 21 6 -6.2488 -3.6194 -1.4428 22 8 -6.7124 -2.8206 -2.2288 23 6 -4.7551 -3.7013 -1.3105 24 7 -0.0359 -2.4315 -0.0051 25 1 -0.4851 0.8400 0.0004 26 1 3.0887 -3.6553 -0.0010 27 1 1.8224 -5.7891 0.0004 28 1 -0.6576 -5.7083 0.0008 29 1 -2.5701 -2.6488 -0.0010 30 1 -2.6495 -5.3235 -0.9000 31 1 -2.6506 -5.3325 0.8799 32 1 -5.0797 -6.2858 -0.8305 33 1 -4.8641 -6.2949 0.9393 34 1 -6.8234 -4.9151 1.2581 35 1 -7.2851 -6.2448 0.1748 36 1 -8.0421 -4.2813 -0.9159 37 1 -4.3365 -2.6949 -1.3037 38 1 -4.3468 -4.2563 -2.1550 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162333025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:50 Heat of formation + Delta-G solvation = -32.140586 kcal Electronic energy + Delta-G solvation = -20645.555670 eV Core-core repulsion = 17486.147837 eV Total energy + Delta-G solvation = -3159.407832 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.36015 -40.07359 -38.18873 -36.55570 -35.27845 -33.84229 -32.21513 -30.78008 -30.46288 -27.53027 -27.15245 -24.46736 -23.50285 -22.55608 -21.88324 -20.17566 -19.22961 -18.44567 -17.89799 -17.13662 -16.71647 -16.43653 -16.40691 -15.95497 -15.66148 -15.19054 -14.91926 -14.66779 -14.49935 -14.35371 -13.85309 -13.55999 -13.37593 -12.85344 -12.73362 -12.71127 -12.59886 -12.23865 -12.19119 -11.89062 -11.83507 -11.70446 -11.25262 -10.86560 -10.61015 -10.06622 -9.80218 -9.41274 -8.25206 -8.21023 -6.46164 1.09381 1.38109 1.41442 1.53281 1.55722 1.60155 2.25485 2.33428 2.70447 2.94657 3.51157 3.68329 3.79863 3.86515 4.09187 4.34661 4.41672 4.42359 4.51361 4.62300 4.73794 4.80420 4.84605 4.94585 4.97308 5.03213 5.03611 5.11360 5.17015 5.33350 5.40894 5.74663 5.84703 6.00005 6.10850 6.24370 6.30070 6.59993 6.85448 6.98037 7.17940 7.24542 8.37591 8.53152 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020494 B = 0.004268 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.918261 B = 6558.578475 C = 7673.508632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.027 3.973 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.475 4.475 8 H 0.085 0.915 9 C 0.260 3.740 10 C -0.346 4.346 11 C -0.030 4.030 12 C -0.364 4.364 13 C 0.392 3.608 14 N -0.735 5.735 15 C 0.146 3.854 16 C -0.088 4.088 17 H 0.083 0.917 18 C -0.124 4.124 19 C 0.107 3.893 20 N -0.709 5.709 21 C 0.520 3.480 22 O -0.614 6.614 23 C -0.127 4.127 24 N -0.568 5.568 25 H 0.275 0.725 26 H 0.100 0.900 27 H 0.130 0.870 28 H 0.124 0.876 29 H 0.390 0.610 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.404 0.596 37 H 0.079 0.921 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.559 -11.415 2.866 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.194 4.194 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.507 4.507 8 H 0.103 0.897 9 C 0.132 3.868 10 C -0.369 4.369 11 C -0.055 4.055 12 C -0.389 4.389 13 C 0.152 3.848 14 N -0.371 5.371 15 C 0.022 3.978 16 C -0.107 4.107 17 H 0.102 0.898 18 C -0.162 4.162 19 C -0.015 4.015 20 N -0.360 5.360 21 C 0.308 3.692 22 O -0.497 6.497 23 C -0.167 4.167 24 N -0.290 5.290 25 H 0.085 0.915 26 H 0.118 0.882 27 H 0.147 0.853 28 H 0.142 0.858 29 H 0.224 0.776 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.132 0.868 34 H 0.099 0.901 35 H 0.129 0.871 36 H 0.240 0.760 37 H 0.098 0.902 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.216 -10.375 2.539 16.992 hybrid contribution 0.499 0.503 -0.217 0.741 sum -12.717 -9.873 2.322 16.266 Atomic orbital electron populations 1.70234 1.08741 1.28634 1.29925 1.26921 0.95699 1.04261 0.92530 0.85254 0.78643 0.75715 0.79990 1.18471 1.19461 1.18298 1.19915 0.94584 0.90616 1.45570 0.89662 1.18653 0.87736 0.93136 0.87251 1.21689 0.98933 0.93887 1.22390 1.21024 0.93891 0.97066 0.93481 1.20978 0.94871 0.96149 1.26950 1.19007 0.86110 0.90275 0.89452 1.44372 1.01371 1.08440 1.82903 1.21351 0.89021 0.85887 1.01556 1.21417 0.93974 0.98730 0.96617 0.89840 1.21908 0.93148 0.95684 1.05480 1.21679 0.96181 0.92694 0.90986 1.45495 1.10297 1.40250 1.39932 1.20384 0.90485 0.79143 0.79189 1.90735 1.79057 1.39782 1.40166 1.21653 0.90683 1.03545 1.00863 1.68176 1.07980 1.26422 1.26461 0.91463 0.88180 0.85250 0.85812 0.77570 0.92357 0.91316 0.89952 0.86794 0.90119 0.87087 0.76015 0.90249 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.69 11.46 21.84 0.25 -41.44 16 2 C 0.03 1.45 5.50 85.29 0.47 1.92 16 3 Si 0.98 39.54 29.56 68.60 2.03 41.57 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 7 C -0.47 -26.83 9.14 23.46 0.21 -26.61 16 8 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 9 C 0.26 14.96 6.55 40.19 0.26 15.23 16 10 C -0.35 -17.76 9.83 22.87 0.22 -17.53 16 11 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 12 C -0.36 -15.82 9.34 22.73 0.21 -15.61 16 13 C 0.39 18.83 7.65 133.40 1.02 19.85 16 14 N -0.74 -27.75 5.52 -345.01 -1.91 -29.66 16 15 C 0.15 3.69 4.28 86.38 0.37 4.06 16 16 C -0.09 -1.68 2.30 -10.65 -0.02 -1.70 16 17 H 0.08 1.65 8.13 -2.39 -0.02 1.63 16 18 C -0.12 -1.31 5.32 30.68 0.16 -1.15 16 19 C 0.11 0.92 7.17 86.49 0.62 1.54 16 20 N -0.71 -11.53 5.45 -467.33 -2.55 -14.07 16 21 C 0.52 13.36 7.71 87.71 0.68 14.03 16 22 O -0.61 -22.07 17.78 -3.02 -0.05 -22.12 16 23 C -0.13 -3.11 5.10 29.71 0.15 -2.96 16 24 N -0.57 -32.16 7.89 -186.58 -1.47 -33.63 16 25 H 0.27 13.88 8.29 -92.71 -0.77 13.11 16 26 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 27 H 0.13 4.69 8.06 -2.91 -0.02 4.66 16 28 H 0.12 4.44 6.68 -2.91 -0.02 4.42 16 29 H 0.39 15.40 7.88 -92.71 -0.73 14.67 16 30 H 0.06 1.46 7.90 -2.39 -0.02 1.44 16 31 H 0.07 1.61 7.91 -2.39 -0.02 1.60 16 32 H 0.08 0.84 8.12 -2.38 -0.02 0.82 16 33 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.40 5.72 8.80 -92.71 -0.82 4.90 16 37 H 0.08 2.36 7.49 -2.39 -0.02 2.34 16 38 H 0.10 2.47 8.07 -2.39 -0.02 2.45 16 Total: -1.00 -75.29 316.67 0.43 -74.86 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: -0.46 Total: 34.55 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 4.59 Total: -10.06 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -5.67 Total: -118.80 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.05 Total: -22.12 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -75.29 0.43 -74.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162333025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.717 kcal (2) G-P(sol) polarization free energy of solvation -75.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds