Wall clock time and date at job start Mon Mar 30 2020 02:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86796 * 120.00113 * 2 1 4 4 H 1.48506 * 109.46986 * 274.50696 * 3 2 1 5 5 H 1.48494 * 109.47236 * 34.50734 * 3 2 1 6 6 H 1.48502 * 109.47139 * 154.51182 * 3 2 1 7 7 C 1.39935 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99542 * 162.93280 * 7 2 1 9 9 C 1.41422 * 120.00287 * 342.93179 * 7 2 1 10 10 C 1.40802 * 120.62369 * 155.78973 * 9 7 2 11 11 N 1.31462 * 120.56230 * 180.02562 * 10 9 7 12 12 C 1.32025 * 122.05934 * 0.02562 * 11 10 9 13 13 C 1.39288 * 121.20927 * 359.97438 * 12 11 10 14 14 N 1.39718 * 120.36550 * 180.02562 * 13 12 11 15 15 C 1.46506 * 119.99548 * 359.97438 * 14 13 12 16 16 C 1.52994 * 109.46817 * 179.97438 * 15 14 13 17 17 H 1.08996 * 109.67639 * 304.50866 * 16 15 14 18 18 C 1.53353 * 109.67530 * 183.96783 * 16 15 14 19 19 C 1.52899 * 108.68868 * 172.75178 * 18 16 15 20 20 N 1.45759 * 110.49663 * 50.72758 * 19 18 16 21 21 C 1.33360 * 124.10544 * 340.96044 * 20 19 18 22 22 O 1.21274 * 118.24426 * 182.22483 * 21 20 19 23 23 C 1.50176 * 123.50500 * 2.19973 * 21 20 19 24 24 C 1.38701 * 119.27487 * 0.02562 * 13 12 11 25 25 H 0.96996 * 119.99722 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.71327 * 0.29961 * 10 9 7 27 27 H 1.07998 * 119.39503 * 179.97438 * 12 11 10 28 28 H 0.96990 * 120.00320 * 180.02562 * 14 13 12 29 29 H 1.08995 * 109.47538 * 300.00299 * 15 14 13 30 30 H 1.09002 * 109.46684 * 60.00051 * 15 14 13 31 31 H 1.09004 * 109.60106 * 292.49878 * 18 16 15 32 32 H 1.08997 * 109.59659 * 52.98214 * 18 16 15 33 33 H 1.08994 * 109.28605 * 290.42179 * 19 18 16 34 34 H 1.08994 * 109.30926 * 171.04616 * 19 18 16 35 35 H 0.96997 * 117.94901 * 160.93951 * 20 19 18 36 36 H 1.08996 * 109.40027 * 222.28813 * 23 21 20 37 37 H 1.09005 * 109.40031 * 102.54862 * 23 21 20 38 38 H 1.08001 * 120.93055 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3945 2.1014 -1.3958 5 1 1.4907 2.6232 0.7931 6 1 3.5843 1.4144 0.6025 7 6 2.0079 -1.2119 0.0005 8 1 3.0523 -1.2326 -0.2740 9 6 1.3475 -2.4095 0.3605 10 6 1.8222 -3.6548 -0.0938 11 7 1.2070 -4.7673 0.2412 12 6 0.1316 -4.7702 1.0070 13 6 -0.4061 -3.5839 1.5007 14 7 -1.5446 -3.6075 2.3102 15 6 -2.1799 -4.8848 2.6435 16 6 -3.3968 -4.6316 3.5356 17 1 -3.0950 -4.0636 4.4155 18 6 -4.0072 -5.9702 3.9685 19 6 -5.1036 -5.6983 4.9989 20 7 -6.0284 -4.6857 4.5051 21 6 -5.7482 -3.8355 3.5166 22 8 -6.5826 -3.0077 3.2178 23 6 -4.4544 -3.8479 2.7542 24 6 0.2012 -2.3788 1.1799 25 1 -0.4849 0.8400 0.0004 26 1 2.7017 -3.6967 -0.7191 27 1 -0.3399 -5.7096 1.2552 28 1 -1.9148 -2.7782 2.6508 29 1 -2.4978 -5.3826 1.7275 30 1 -1.4674 -5.5178 3.1726 31 1 -4.4366 -6.4735 3.1022 32 1 -3.2346 -6.5974 4.4131 33 1 -4.6481 -5.3489 5.9255 34 1 -5.6504 -6.6205 5.1953 35 1 -6.9026 -4.6268 4.9212 36 1 -4.1110 -2.8240 2.6071 37 1 -4.6106 -4.3191 1.7837 38 1 -0.1929 -1.4432 1.5484 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162338863.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:54 Heat of formation + Delta-G solvation = -23.824306 kcal Electronic energy + Delta-G solvation = -20553.230404 eV Core-core repulsion = 17394.183193 eV Total energy + Delta-G solvation = -3159.047211 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.46089 -38.45996 -37.13965 -35.41122 -33.96633 -32.96354 -30.27367 -29.87590 -28.64568 -26.07897 -25.48390 -23.60556 -22.22635 -21.14121 -20.47817 -19.41581 -17.55550 -17.27657 -16.34719 -15.98697 -15.56879 -15.39567 -14.98870 -14.81443 -14.65113 -14.22553 -13.58838 -13.47873 -13.15567 -12.98893 -12.72028 -12.14739 -11.94125 -11.63714 -11.47206 -11.36079 -11.21654 -11.14261 -11.03877 -10.87894 -10.53266 -9.93061 -9.83715 -9.48330 -9.32222 -9.30280 -8.05514 -7.74073 -6.83613 -6.39832 -4.45819 2.52341 2.75255 3.04926 3.08449 3.09219 3.13137 3.25626 3.89187 4.03253 4.34874 4.45219 4.50964 4.64571 4.67126 5.05391 5.09676 5.18859 5.40138 5.50086 5.54679 5.71886 5.77370 5.81060 5.94770 6.10912 6.15636 6.55333 6.56813 6.66416 6.90441 7.09999 7.11780 7.16931 7.57581 7.72061 7.97445 8.05791 8.20086 8.43598 8.62624 8.77249 8.87279 9.76108 10.11866 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021190 B = 0.004083 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.042810 B = 6855.579831 C = 7919.047367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.077 3.923 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.452 4.452 8 H 0.082 0.918 9 C 0.096 3.904 10 C -0.051 4.051 11 N -0.447 5.447 12 C -0.099 4.099 13 C 0.174 3.826 14 N -0.756 5.756 15 C 0.142 3.858 16 C -0.101 4.101 17 H 0.083 0.917 18 C -0.130 4.130 19 C 0.112 3.888 20 N -0.724 5.724 21 C 0.521 3.479 22 O -0.559 6.559 23 C -0.130 4.130 24 C -0.209 4.209 25 H 0.281 0.719 26 H 0.123 0.877 27 H 0.114 0.886 28 H 0.390 0.610 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.397 0.603 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.915 -7.806 10.133 15.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.482 4.482 8 H 0.100 0.900 9 C 0.091 3.909 10 C -0.216 4.216 11 N -0.154 5.154 12 C -0.258 4.258 13 C 0.073 3.927 14 N -0.390 5.390 15 C 0.016 3.984 16 C -0.120 4.120 17 H 0.102 0.898 18 C -0.169 4.169 19 C -0.013 4.013 20 N -0.376 5.376 21 C 0.309 3.691 22 O -0.437 6.437 23 C -0.169 4.169 24 C -0.240 4.240 25 H 0.092 0.908 26 H 0.140 0.860 27 H 0.131 0.869 28 H 0.224 0.776 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.232 0.768 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.054 -8.254 9.568 15.545 hybrid contribution -0.524 1.892 0.615 2.057 sum -9.578 -6.363 10.183 15.359 Atomic orbital electron populations 1.69829 1.07650 1.29270 1.34463 1.25942 0.94734 1.01414 0.92119 0.86298 0.80768 0.80545 0.79149 1.19473 1.20067 1.18320 1.19552 0.97945 0.90927 1.39788 0.90010 1.18265 0.91051 0.93372 0.88247 1.22335 1.03602 0.88152 1.07469 1.66821 1.06844 1.31974 1.09727 1.21207 1.00218 0.94438 1.09912 1.18652 0.87031 0.95547 0.91452 1.44327 1.30541 1.06415 1.57761 1.21105 0.92235 0.87702 0.97312 1.21500 0.94975 0.96378 0.99169 0.89840 1.21880 0.97966 0.97474 0.99540 1.21372 0.91474 0.91277 0.97150 1.45507 1.19093 1.35759 1.37261 1.20316 0.89484 0.79714 0.79603 1.90764 1.48926 1.37530 1.66530 1.21733 0.91349 1.04175 0.99691 1.21082 1.01817 0.95050 1.06037 0.90832 0.85984 0.86855 0.77634 0.92776 0.92634 0.90491 0.89190 0.91562 0.90471 0.76829 0.87774 0.87795 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.92 10.93 55.55 0.61 -19.31 16 2 C 0.08 1.88 5.18 -17.34 -0.09 1.79 16 3 Si 0.91 18.26 29.59 -169.99 -5.03 13.23 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.45 -11.76 9.08 -37.74 -0.34 -12.10 16 8 H 0.08 2.02 7.90 -52.48 -0.41 1.61 16 9 C 0.10 2.55 5.59 -106.69 -0.60 1.95 16 10 C -0.05 -1.30 10.97 -16.74 -0.18 -1.49 16 11 N -0.45 -11.21 10.33 -12.37 -0.13 -11.34 16 12 C -0.10 -2.27 10.49 -17.08 -0.18 -2.45 16 13 C 0.17 3.91 6.66 -83.70 -0.56 3.35 16 14 N -0.76 -13.03 5.54 -58.58 -0.32 -13.35 16 15 C 0.14 1.84 4.32 -4.04 -0.02 1.82 16 16 C -0.10 -0.99 2.30 -90.40 -0.21 -1.20 16 17 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 18 C -0.13 -0.90 5.32 -26.60 -0.14 -1.04 16 19 C 0.11 0.67 7.17 -4.49 -0.03 0.63 16 20 N -0.72 -6.37 5.45 -61.40 -0.33 -6.71 16 21 C 0.52 6.52 7.71 -11.87 -0.09 6.43 16 22 O -0.56 -9.50 17.78 5.56 0.10 -9.40 16 23 C -0.13 -1.50 5.10 -28.10 -0.14 -1.64 16 24 C -0.21 -5.30 8.66 -38.39 -0.33 -5.64 16 25 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 26 H 0.12 2.92 8.06 -52.49 -0.42 2.50 16 27 H 0.11 2.30 6.73 -52.49 -0.35 1.95 16 28 H 0.39 6.42 7.79 -40.82 -0.32 6.10 16 29 H 0.05 0.73 7.92 -51.93 -0.41 0.31 16 30 H 0.06 0.71 7.96 -51.93 -0.41 0.30 16 31 H 0.08 0.54 8.12 -51.93 -0.42 0.11 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.40 3.08 8.80 -40.82 -0.36 2.72 16 36 H 0.10 1.35 7.50 -51.93 -0.39 0.96 16 37 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16 38 H 0.12 3.22 6.22 -52.49 -0.33 2.89 16 LS Contribution 315.42 15.07 4.75 4.75 Total: -1.00 -31.46 315.42 -8.35 -39.81 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -5.07 Total: 11.90 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -2.92 Total: -9.59 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.18 Total: -50.70 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.10 Total: -9.40 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.46 -8.35 -39.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162338863.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.983 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds