Wall clock time and date at job start Mon Mar 30 2020 02:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86802 * 120.00340 * 2 1 4 4 H 1.48497 * 109.47135 * 270.00410 * 3 2 1 5 5 H 1.48505 * 109.46847 * 30.00012 * 3 2 1 6 6 H 1.48499 * 109.47436 * 150.00195 * 3 2 1 7 7 C 1.39934 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00626 * 162.93066 * 7 2 1 9 9 C 1.41429 * 119.99417 * 342.93756 * 7 2 1 10 10 C 1.40801 * 120.62148 * 155.80225 * 9 7 2 11 11 N 1.31467 * 120.56173 * 179.97438 * 10 9 7 12 12 C 1.32019 * 122.05927 * 359.70418 * 11 10 9 13 13 C 1.39288 * 121.20622 * 0.58992 * 12 11 10 14 14 N 1.39721 * 120.36074 * 179.69689 * 13 12 11 15 15 C 1.46495 * 120.00355 * 359.72269 * 14 13 12 16 16 C 1.52999 * 109.47344 * 179.97438 * 15 14 13 17 17 H 1.08996 * 109.67082 * 55.50544 * 16 15 14 18 18 C 1.53347 * 109.70265 * 176.01647 * 16 15 14 19 19 C 1.52917 * 108.67529 * 187.28303 * 18 16 15 20 20 N 1.45777 * 110.42444 * 309.03097 * 19 18 16 21 21 C 1.33354 * 124.08467 * 19.57727 * 20 19 18 22 22 O 1.21288 * 118.24384 * 177.48897 * 21 20 19 23 23 C 1.50173 * 123.51458 * 357.20302 * 21 20 19 24 24 C 1.38701 * 119.27642 * 359.42490 * 13 12 11 25 25 H 0.97000 * 119.99846 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.71978 * 359.95904 * 10 9 7 27 27 H 1.08002 * 119.39486 * 180.28794 * 12 11 10 28 28 H 0.97009 * 119.99697 * 179.72382 * 14 13 12 29 29 H 1.09007 * 109.47068 * 59.99908 * 15 14 13 30 30 H 1.08998 * 109.47183 * 300.00294 * 15 14 13 31 31 H 1.09004 * 109.60593 * 307.04086 * 18 16 15 32 32 H 1.08998 * 109.60494 * 67.36343 * 18 16 15 33 33 H 1.09002 * 109.30454 * 69.55938 * 19 18 16 34 34 H 1.09001 * 109.30009 * 189.14133 * 19 18 16 35 35 H 0.96993 * 117.96675 * 199.31072 * 20 19 18 36 36 H 1.09002 * 109.40365 * 137.99179 * 23 21 20 37 37 H 1.08998 * 109.40736 * 257.73851 * 23 21 20 38 38 H 1.08003 * 120.92960 * 180.25512 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4398 2.6527 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0523 -1.2324 -0.2751 9 6 1.3475 -2.4098 0.3583 10 6 1.8224 -3.6547 -0.0969 11 7 1.2078 -4.7676 0.2378 12 6 0.1364 -4.7717 1.0092 13 6 -0.4048 -3.5854 1.4990 14 7 -1.5430 -3.6099 2.3090 15 6 -2.1775 -4.8875 2.6424 16 6 -3.3942 -4.6351 3.5350 17 1 -4.0726 -3.9387 3.0423 18 6 -4.1201 -5.9585 3.8058 19 6 -5.4260 -5.6587 4.5428 20 7 -5.1743 -4.8049 5.6972 21 6 -4.0801 -4.0580 5.8499 22 8 -4.0005 -3.3506 6.8319 23 6 -2.9386 -4.0504 4.8742 24 6 0.2019 -2.3800 1.1787 25 1 -0.4850 0.8401 0.0004 26 1 2.6989 -3.6957 -0.7266 27 1 -0.3319 -5.7118 1.2611 28 1 -1.9131 -2.7808 2.6505 29 1 -1.4645 -5.5203 3.1710 30 1 -2.4954 -5.3853 1.7263 31 1 -4.3393 -6.4555 2.8608 32 1 -3.4903 -6.6021 4.4199 33 1 -6.1164 -5.1583 3.8637 34 1 -5.8703 -6.5940 4.8835 35 1 -5.8460 -4.7754 6.3962 36 1 -2.5969 -3.0262 4.7246 37 1 -2.1191 -4.6498 5.2709 38 1 -0.1927 -1.4446 1.5473 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162338864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:57 Heat of formation + Delta-G solvation = -23.962724 kcal Electronic energy + Delta-G solvation = -20536.913781 eV Core-core repulsion = 17377.860567 eV Total energy + Delta-G solvation = -3159.053214 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47181 -38.46265 -37.14593 -35.41639 -33.96960 -32.96971 -30.27673 -29.88340 -28.65082 -26.08178 -25.48758 -23.61224 -22.22894 -21.14448 -20.48016 -19.43070 -17.56384 -17.27919 -16.35664 -15.99017 -15.57235 -15.39844 -14.99435 -14.80900 -14.67547 -14.23242 -13.59713 -13.48420 -13.13968 -12.99878 -12.74464 -12.14010 -11.93676 -11.66170 -11.47341 -11.36513 -11.22895 -11.12235 -11.04461 -10.88645 -10.53754 -9.95419 -9.83350 -9.48539 -9.33302 -9.30347 -8.05310 -7.74696 -6.84116 -6.39985 -4.46075 2.50579 2.75298 3.04735 3.07803 3.08636 3.13077 3.25669 3.89042 4.03109 4.34098 4.44695 4.50017 4.63281 4.67785 5.04905 5.08997 5.18398 5.40030 5.48890 5.54305 5.70985 5.76371 5.79200 5.95431 6.10849 6.14926 6.54101 6.56574 6.66258 6.90163 7.09771 7.10521 7.16629 7.57445 7.71828 7.97307 8.04189 8.19904 8.43424 8.62369 8.77015 8.87045 9.75922 10.11354 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.004021 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.661426 B = 6962.507652 C = 7917.170342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.077 3.923 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.452 4.452 8 H 0.082 0.918 9 C 0.096 3.904 10 C -0.051 4.051 11 N -0.446 5.446 12 C -0.099 4.099 13 C 0.174 3.826 14 N -0.756 5.756 15 C 0.142 3.858 16 C -0.102 4.102 17 H 0.084 0.916 18 C -0.130 4.130 19 C 0.112 3.888 20 N -0.723 5.723 21 C 0.521 3.479 22 O -0.560 6.560 23 C -0.129 4.129 24 C -0.209 4.209 25 H 0.280 0.720 26 H 0.123 0.877 27 H 0.114 0.886 28 H 0.390 0.610 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.397 0.603 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.214 -7.536 6.908 15.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.482 4.482 8 H 0.100 0.900 9 C 0.091 3.909 10 C -0.216 4.216 11 N -0.154 5.154 12 C -0.258 4.258 13 C 0.073 3.927 14 N -0.390 5.390 15 C 0.017 3.983 16 C -0.121 4.121 17 H 0.102 0.898 18 C -0.169 4.169 19 C -0.013 4.013 20 N -0.376 5.376 21 C 0.309 3.691 22 O -0.439 6.439 23 C -0.169 4.169 24 C -0.240 4.240 25 H 0.091 0.909 26 H 0.140 0.860 27 H 0.132 0.868 28 H 0.224 0.776 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.232 0.768 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.936 -8.042 6.928 15.240 hybrid contribution -0.565 1.900 0.556 2.059 sum -11.501 -6.142 7.484 15.033 Atomic orbital electron populations 1.69827 1.07667 1.29243 1.34601 1.25937 0.94734 1.01416 0.92074 0.86309 0.80707 0.80438 0.79296 1.19403 1.20111 1.18332 1.19548 0.97945 0.90910 1.39805 0.90004 1.18263 0.91036 0.93367 0.88251 1.22336 1.03594 0.88162 1.07463 1.66821 1.06881 1.31954 1.09710 1.21209 1.00323 0.94422 1.09804 1.18653 0.87038 0.95545 0.91442 1.44329 1.30654 1.06408 1.57650 1.21102 0.92385 0.87696 0.97156 1.21503 0.97908 0.97442 0.95220 0.89776 1.21879 0.95847 0.97472 1.01667 1.21396 0.97869 0.94315 0.87696 1.45511 1.21926 1.46175 1.23967 1.20311 0.83543 0.78349 0.86915 1.90765 1.80247 1.41310 1.31534 1.21727 0.96427 1.05059 0.93693 1.21084 1.01822 0.95064 1.06003 0.90868 0.85975 0.86849 0.77629 0.92805 0.92608 0.89186 0.90503 0.91460 0.90467 0.76812 0.87859 0.87823 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.85 10.93 55.55 0.61 -19.24 16 2 C 0.08 1.89 5.18 -17.34 -0.09 1.80 16 3 Si 0.91 18.26 29.59 -169.99 -5.03 13.23 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.45 -11.76 9.08 -37.73 -0.34 -12.10 16 8 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 9 C 0.10 2.55 5.59 -106.70 -0.60 1.95 16 10 C -0.05 -1.30 10.97 -16.74 -0.18 -1.49 16 11 N -0.45 -11.20 10.33 -12.37 -0.13 -11.33 16 12 C -0.10 -2.27 10.49 -17.08 -0.18 -2.45 16 13 C 0.17 3.91 6.67 -83.70 -0.56 3.35 16 14 N -0.76 -13.02 5.54 -58.58 -0.32 -13.35 16 15 C 0.14 1.84 4.32 -4.04 -0.02 1.82 16 16 C -0.10 -0.99 2.30 -90.40 -0.21 -1.20 16 17 H 0.08 0.84 8.13 -51.93 -0.42 0.42 16 18 C -0.13 -0.90 5.32 -26.59 -0.14 -1.04 16 19 C 0.11 0.67 7.17 -4.47 -0.03 0.63 16 20 N -0.72 -6.30 5.45 -61.37 -0.33 -6.63 16 21 C 0.52 6.40 7.71 -11.87 -0.09 6.31 16 22 O -0.56 -9.35 17.78 5.55 0.10 -9.25 16 23 C -0.13 -1.45 5.10 -28.10 -0.14 -1.60 16 24 C -0.21 -5.30 8.67 -38.39 -0.33 -5.63 16 25 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 26 H 0.12 2.92 8.06 -52.48 -0.42 2.50 16 27 H 0.11 2.30 6.73 -52.49 -0.35 1.95 16 28 H 0.39 6.42 7.79 -40.82 -0.32 6.10 16 29 H 0.05 0.70 7.91 -51.92 -0.41 0.29 16 30 H 0.06 0.73 7.97 -51.93 -0.41 0.32 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.53 8.12 -51.93 -0.42 0.10 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.40 3.04 8.80 -40.82 -0.36 2.68 16 36 H 0.10 1.28 7.50 -51.93 -0.39 0.89 16 37 H 0.10 1.15 8.07 -51.93 -0.42 0.73 16 38 H 0.12 3.22 6.22 -52.48 -0.33 2.89 16 LS Contribution 315.43 15.07 4.75 4.75 Total: -1.00 -31.38 315.43 -8.35 -39.72 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -5.07 Total: 11.73 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -2.92 Total: -9.65 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.18 Total: -50.55 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.10 Total: -9.25 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.38 -8.35 -39.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162338864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.761 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds