Wall clock time and date at job start Mon Mar 30 2020 02:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86802 * 120.00340 * 2 1 4 4 H 1.48497 * 109.47135 * 270.00410 * 3 2 1 5 5 H 1.48505 * 109.46847 * 30.00012 * 3 2 1 6 6 H 1.48499 * 109.47436 * 150.00195 * 3 2 1 7 7 C 1.39934 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00626 * 162.93066 * 7 2 1 9 9 C 1.41429 * 119.99417 * 342.93756 * 7 2 1 10 10 C 1.40801 * 120.62148 * 155.80225 * 9 7 2 11 11 N 1.31467 * 120.56173 * 179.97438 * 10 9 7 12 12 C 1.32019 * 122.05927 * 359.70418 * 11 10 9 13 13 C 1.39288 * 121.20622 * 0.58992 * 12 11 10 14 14 N 1.39721 * 120.36074 * 179.69689 * 13 12 11 15 15 C 1.46495 * 120.00355 * 359.72269 * 14 13 12 16 16 C 1.52999 * 109.47344 * 179.97438 * 15 14 13 17 17 H 1.08996 * 109.67082 * 55.50544 * 16 15 14 18 18 C 1.53347 * 109.70265 * 176.01647 * 16 15 14 19 19 C 1.52917 * 108.67529 * 187.28303 * 18 16 15 20 20 N 1.45777 * 110.42444 * 309.03097 * 19 18 16 21 21 C 1.33354 * 124.08467 * 19.57727 * 20 19 18 22 22 O 1.21288 * 118.24384 * 177.48897 * 21 20 19 23 23 C 1.50173 * 123.51458 * 357.20302 * 21 20 19 24 24 C 1.38701 * 119.27642 * 359.42490 * 13 12 11 25 25 H 0.97000 * 119.99846 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.71978 * 359.95904 * 10 9 7 27 27 H 1.08002 * 119.39486 * 180.28794 * 12 11 10 28 28 H 0.97009 * 119.99697 * 179.72382 * 14 13 12 29 29 H 1.09007 * 109.47068 * 59.99908 * 15 14 13 30 30 H 1.08998 * 109.47183 * 300.00294 * 15 14 13 31 31 H 1.09004 * 109.60593 * 307.04086 * 18 16 15 32 32 H 1.08998 * 109.60494 * 67.36343 * 18 16 15 33 33 H 1.09002 * 109.30454 * 69.55938 * 19 18 16 34 34 H 1.09001 * 109.30009 * 189.14133 * 19 18 16 35 35 H 0.96993 * 117.96675 * 199.31072 * 20 19 18 36 36 H 1.09002 * 109.40365 * 137.99179 * 23 21 20 37 37 H 1.08998 * 109.40736 * 257.73851 * 23 21 20 38 38 H 1.08003 * 120.92960 * 180.25512 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4398 2.6527 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0523 -1.2324 -0.2751 9 6 1.3475 -2.4098 0.3583 10 6 1.8224 -3.6547 -0.0969 11 7 1.2078 -4.7676 0.2378 12 6 0.1364 -4.7717 1.0092 13 6 -0.4048 -3.5854 1.4990 14 7 -1.5430 -3.6099 2.3090 15 6 -2.1775 -4.8875 2.6424 16 6 -3.3942 -4.6351 3.5350 17 1 -4.0726 -3.9387 3.0423 18 6 -4.1201 -5.9585 3.8058 19 6 -5.4260 -5.6587 4.5428 20 7 -5.1743 -4.8049 5.6972 21 6 -4.0801 -4.0580 5.8499 22 8 -4.0005 -3.3506 6.8319 23 6 -2.9386 -4.0504 4.8742 24 6 0.2019 -2.3800 1.1787 25 1 -0.4850 0.8401 0.0004 26 1 2.6989 -3.6957 -0.7266 27 1 -0.3319 -5.7118 1.2611 28 1 -1.9131 -2.7808 2.6505 29 1 -1.4645 -5.5203 3.1710 30 1 -2.4954 -5.3853 1.7263 31 1 -4.3393 -6.4555 2.8608 32 1 -3.4903 -6.6021 4.4199 33 1 -6.1164 -5.1583 3.8637 34 1 -5.8703 -6.5940 4.8835 35 1 -5.8460 -4.7754 6.3962 36 1 -2.5969 -3.0262 4.7246 37 1 -2.1191 -4.6498 5.2709 38 1 -0.1927 -1.4446 1.5473 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162338864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:57 Heat of formation + Delta-G solvation = -46.420774 kcal Electronic energy + Delta-G solvation = -20537.887635 eV Core-core repulsion = 17377.860567 eV Total energy + Delta-G solvation = -3160.027068 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.36612 -40.23063 -38.23031 -36.61032 -35.80338 -34.14050 -32.16889 -30.68429 -30.14152 -27.59431 -27.04739 -24.44039 -23.87095 -22.54387 -22.03999 -20.18689 -19.12091 -18.39766 -17.66542 -17.21817 -17.16642 -16.65303 -16.46514 -16.26708 -15.68493 -15.24057 -14.97999 -14.62396 -14.49903 -14.37032 -13.77846 -13.56633 -13.45263 -13.18611 -13.08399 -12.76219 -12.64631 -12.27589 -12.19246 -11.93584 -11.86729 -11.67344 -11.15429 -11.07030 -10.83749 -10.07534 -9.97854 -9.68033 -8.68010 -8.06718 -6.42436 0.96246 1.23032 1.40182 1.51231 1.55630 1.57668 2.20662 2.33327 2.73140 2.80465 3.49946 3.67652 3.79063 3.83352 3.85949 4.28171 4.36842 4.42411 4.49747 4.60742 4.69153 4.75660 4.81565 4.90885 4.93364 4.96477 5.00058 5.11136 5.20167 5.31077 5.35914 5.73497 5.83153 5.91078 6.03432 6.29973 6.37035 6.75213 6.85418 6.85705 7.08182 7.17405 7.84053 8.29079 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.004021 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.661426 B = 6962.507652 C = 7917.170342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.039 3.961 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.486 4.486 8 H 0.082 0.918 9 C 0.072 3.928 10 C -0.080 4.080 11 N -0.455 5.455 12 C -0.103 4.103 13 C 0.187 3.813 14 N -0.747 5.747 15 C 0.137 3.863 16 C -0.088 4.088 17 H 0.085 0.915 18 C -0.126 4.126 19 C 0.108 3.892 20 N -0.710 5.710 21 C 0.519 3.481 22 O -0.614 6.614 23 C -0.127 4.127 24 C -0.237 4.237 25 H 0.289 0.711 26 H 0.127 0.873 27 H 0.145 0.855 28 H 0.393 0.607 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.404 0.596 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.824 -8.494 7.105 16.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.516 4.516 8 H 0.100 0.900 9 C 0.067 3.933 10 C -0.244 4.244 11 N -0.163 5.163 12 C -0.263 4.263 13 C 0.082 3.918 14 N -0.379 5.379 15 C 0.013 3.987 16 C -0.107 4.107 17 H 0.103 0.897 18 C -0.164 4.164 19 C -0.015 4.015 20 N -0.361 5.361 21 C 0.307 3.693 22 O -0.497 6.497 23 C -0.167 4.167 24 C -0.268 4.268 25 H 0.100 0.900 26 H 0.144 0.856 27 H 0.163 0.837 28 H 0.228 0.772 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.129 0.871 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.127 0.873 35 H 0.239 0.761 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.603 -9.057 7.112 17.072 hybrid contribution -0.206 2.063 0.525 2.139 sum -12.809 -6.994 7.637 16.471 Atomic orbital electron populations 1.69870 1.09023 1.30630 1.34558 1.26765 0.95495 1.04468 0.90998 0.85193 0.79146 0.75751 0.79597 1.18523 1.19160 1.18246 1.19827 0.98303 0.92006 1.41467 0.89971 1.18581 0.91869 0.94017 0.88827 1.22419 1.04624 0.88353 1.08961 1.66821 1.07572 1.31743 1.10127 1.21722 0.99809 0.95789 1.09025 1.18674 0.87805 0.94437 0.90835 1.44485 1.28983 1.08554 1.55870 1.21379 0.93452 0.85600 0.98224 1.21404 0.96658 0.99318 0.93358 0.89680 1.21912 0.95914 0.95589 1.03031 1.21678 0.97706 0.95282 0.86820 1.45520 1.20703 1.45008 1.24820 1.20426 0.84445 0.78193 0.86234 1.90741 1.81496 1.43858 1.33641 1.21670 0.96354 1.04212 0.94501 1.21068 1.02661 0.95724 1.07346 0.90049 0.85565 0.83726 0.77241 0.92270 0.91685 0.87066 0.90014 0.90060 0.87306 0.76051 0.89687 0.87705 0.87051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.67 10.93 21.82 0.24 -41.44 16 2 C 0.04 1.93 5.18 85.25 0.44 2.37 16 3 Si 0.98 37.54 29.59 68.60 2.03 39.57 16 4 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 5 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 6 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 7 C -0.49 -26.08 9.08 23.47 0.21 -25.87 16 8 H 0.08 4.22 7.90 -2.91 -0.02 4.19 16 9 C 0.07 3.96 5.59 -21.21 -0.12 3.84 16 10 C -0.08 -4.22 10.97 85.37 0.94 -3.28 16 11 N -0.46 -22.88 10.33 -193.05 -1.99 -24.88 16 12 C -0.10 -4.65 10.49 84.92 0.89 -3.76 16 13 C 0.19 8.32 6.67 38.25 0.25 8.57 16 14 N -0.75 -24.92 5.54 -339.24 -1.88 -26.80 16 15 C 0.14 3.20 4.32 86.38 0.37 3.57 16 16 C -0.09 -1.50 2.30 -10.65 -0.02 -1.52 16 17 H 0.08 1.48 8.13 -2.39 -0.02 1.46 16 18 C -0.13 -1.24 5.32 30.68 0.16 -1.07 16 19 C 0.11 0.84 7.17 86.49 0.62 1.46 16 20 N -0.71 -10.63 5.45 -467.27 -2.55 -13.18 16 21 C 0.52 12.27 7.71 87.71 0.68 12.95 16 22 O -0.61 -20.74 17.78 -3.05 -0.05 -20.79 16 23 C -0.13 -2.74 5.10 29.71 0.15 -2.59 16 24 C -0.24 -12.30 8.67 23.04 0.20 -12.10 16 25 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 26 H 0.13 6.30 8.06 -2.91 -0.02 6.27 16 27 H 0.15 5.48 6.73 -2.91 -0.02 5.47 16 28 H 0.39 12.78 7.79 -92.70 -0.72 12.06 16 29 H 0.06 1.37 7.91 -2.38 -0.02 1.36 16 30 H 0.06 1.47 7.97 -2.39 -0.02 1.45 16 31 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.08 0.78 8.12 -2.39 -0.02 0.77 16 33 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.40 5.28 8.80 -92.71 -0.82 4.47 16 36 H 0.08 2.13 7.50 -2.39 -0.02 2.12 16 37 H 0.10 2.21 8.07 -2.39 -0.02 2.20 16 38 H 0.11 5.97 6.22 -2.91 -0.02 5.96 16 Total: -1.00 -70.25 315.43 0.13 -70.11 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: -0.44 Total: 34.83 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 4.78 Total: -17.43 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -6.18 Total: -106.29 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.05 Total: -20.79 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Total: -70.25 0.13 -70.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162338864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.694 kcal (2) G-P(sol) polarization free energy of solvation -70.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds