Wall clock time and date at job start Mon Mar 30 2020 02:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86797 * 120.00273 * 2 1 4 4 H 1.48500 * 109.47396 * 269.99676 * 3 2 1 5 5 H 1.48509 * 109.47086 * 29.99867 * 3 2 1 6 6 H 1.48500 * 109.47354 * 149.99823 * 3 2 1 7 7 C 1.40060 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00484 * 173.78812 * 7 2 1 9 9 C 1.41277 * 119.99849 * 353.78536 * 7 2 1 10 10 C 1.40717 * 120.16062 * 186.36490 * 9 7 2 11 11 N 1.31903 * 119.93005 * 180.02562 * 10 9 7 12 12 C 1.32157 * 120.27325 * 0.02562 * 11 10 9 13 13 C 1.39918 * 120.31764 * 359.97438 * 12 11 10 14 14 N 1.38836 * 119.96741 * 179.97438 * 13 12 11 15 15 C 1.46505 * 119.99678 * 4.87482 * 14 13 12 16 16 H 1.08997 * 115.55715 * 347.39585 * 15 14 13 17 17 C 1.53041 * 117.53003 * 133.14660 * 15 14 13 18 18 C 1.52740 * 59.94425 * 107.45527 * 17 15 14 19 19 C 1.53269 * 117.80961 * 252.27977 * 18 17 15 20 20 C 1.53407 * 108.35553 * 163.59662 * 19 18 17 21 21 C 1.53049 * 109.08440 * 53.64215 * 20 19 18 22 22 O 1.42828 * 109.83277 * 299.23832 * 21 20 19 23 23 C 1.43137 * 114.09027 * 64.23358 * 22 21 20 24 24 N 1.32263 * 120.07006 * 0.26054 * 13 12 11 25 25 H 0.96999 * 120.00004 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.03151 * 0.04903 * 10 9 7 27 27 H 1.07998 * 119.83783 * 179.97438 * 12 11 10 28 28 H 0.96996 * 120.00497 * 184.88238 * 14 13 12 29 29 H 1.09002 * 117.50371 * 214.92756 * 17 15 14 30 30 H 1.08995 * 117.50770 * 359.97438 * 17 15 14 31 31 H 1.09005 * 109.68573 * 283.30541 * 19 18 17 32 32 H 1.08994 * 109.68989 * 43.83760 * 19 18 17 33 33 H 1.08999 * 109.53134 * 173.52895 * 20 19 18 34 34 H 1.09003 * 109.53216 * 293.76451 * 20 19 18 35 35 H 1.09001 * 109.41048 * 59.34963 * 21 20 19 36 36 H 1.09001 * 109.41170 * 179.12543 * 21 20 19 37 37 H 1.08996 * 109.59869 * 182.79249 * 23 22 21 38 38 H 1.08998 * 109.59232 * 62.34510 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4889 2.0464 -1.4000 5 1 1.4387 2.6527 0.7001 6 1 3.5389 1.4401 0.7001 7 6 2.0076 -1.2129 0.0005 8 1 3.0828 -1.2157 -0.1007 9 6 1.3075 -2.4328 0.1335 10 6 2.0139 -3.6422 0.2690 11 7 1.3556 -4.7786 0.3924 12 6 0.0340 -4.7867 0.3888 13 6 -0.6793 -3.5905 0.2548 14 7 -2.0676 -3.6076 0.2515 15 6 -2.7852 -4.8614 0.4950 16 1 -2.1780 -5.7658 0.4573 17 6 -3.9455 -4.8301 1.4924 18 6 -4.2260 -4.9578 -0.0036 19 6 -4.8140 -3.7414 -0.7272 20 6 -4.6270 -3.9404 -2.2368 21 6 -5.2183 -5.2931 -2.6403 22 8 -4.5413 -6.3436 -1.9487 23 6 -4.7119 -6.3125 -0.5279 24 7 -0.0325 -2.4441 0.1256 25 1 -0.4850 0.8400 -0.0004 26 1 3.0938 -3.6400 0.2723 27 1 -0.4978 -5.7212 0.4899 28 1 -2.5623 -2.7895 0.0879 29 1 -4.1015 -5.7139 2.1111 30 1 -4.1749 -3.8767 1.9681 31 1 -5.8760 -3.6552 -0.4971 32 1 -4.2946 -2.8378 -0.4082 33 1 -5.1391 -3.1432 -2.7756 34 1 -3.5642 -3.9206 -2.4781 35 1 -6.2779 -5.3157 -2.3856 36 1 -5.1021 -5.4332 -3.7150 37 1 -4.1278 -7.1119 -0.0720 38 1 -5.7662 -6.4423 -0.2835 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162374973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:09 Heat of formation + Delta-G solvation = 25.118494 kcal Electronic energy + Delta-G solvation = -21164.283789 eV Core-core repulsion = 18007.358897 eV Total energy + Delta-G solvation = -3156.924892 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.95325 -38.77487 -36.85922 -34.05245 -33.42935 -32.62214 -31.30760 -28.90396 -27.60318 -25.91928 -25.18633 -22.74070 -22.19873 -22.03884 -20.75991 -18.90315 -17.42063 -16.89863 -16.22405 -15.82637 -15.61732 -15.05275 -14.98044 -14.63830 -14.29426 -14.00975 -13.39400 -13.11258 -12.92162 -12.80068 -12.55116 -12.09729 -11.63887 -11.51204 -11.36865 -11.18899 -11.17082 -10.89797 -10.67977 -10.57461 -10.40485 -9.84985 -9.72068 -9.53344 -9.39437 -9.26158 -8.30870 -7.39774 -6.68215 -6.46213 -4.66352 2.67949 3.03422 3.05175 3.09552 3.27413 3.64935 3.86171 3.88100 4.14956 4.68104 4.71665 4.75490 4.88779 4.97820 5.00365 5.20153 5.35469 5.48095 5.55061 5.58047 5.76662 5.80233 5.87056 5.90889 5.97854 6.01119 6.21520 6.23908 6.31459 6.34985 6.56229 6.78883 7.02570 7.13011 7.16893 7.59584 7.93776 8.04578 8.40629 8.55064 8.83863 9.41161 9.98594 10.17573 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022466 B = 0.004774 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.039996 B = 5863.085962 C = 6489.816661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.068 3.932 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.091 0.909 9 C 0.246 3.754 10 C -0.107 4.107 11 N -0.407 5.407 12 C -0.167 4.167 13 C 0.374 3.626 14 N -0.697 5.697 15 C 0.133 3.867 16 H 0.129 0.871 17 C -0.191 4.191 18 C -0.182 4.182 19 C -0.080 4.080 20 C -0.153 4.153 21 C 0.064 3.936 22 O -0.378 6.378 23 C 0.104 3.896 24 N -0.508 5.508 25 H 0.273 0.727 26 H 0.130 0.870 27 H 0.121 0.879 28 H 0.396 0.604 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.731 -4.395 -1.158 12.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.332 5.332 2 C -0.158 4.158 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.449 4.449 8 H 0.109 0.891 9 C 0.118 3.882 10 C -0.277 4.277 11 N -0.119 5.119 12 C -0.328 4.328 13 C 0.132 3.868 14 N -0.331 5.331 15 C 0.024 3.976 16 H 0.147 0.853 17 C -0.231 4.231 18 C -0.185 4.185 19 C -0.117 4.117 20 C -0.190 4.190 21 C -0.013 4.013 22 O -0.297 6.297 23 C 0.027 3.973 24 N -0.234 5.234 25 H 0.085 0.915 26 H 0.148 0.852 27 H 0.139 0.861 28 H 0.233 0.767 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.807 -4.584 -1.236 12.726 hybrid contribution -0.154 1.410 0.178 1.429 sum -11.960 -3.174 -1.058 12.420 Atomic orbital electron populations 1.70106 1.07390 1.27971 1.27719 1.26127 0.94926 1.01323 0.93419 0.86274 0.80571 0.80408 0.79327 1.19296 1.20104 1.18283 1.19622 0.94934 0.89250 1.41096 0.89141 1.19088 0.87607 0.93257 0.88269 1.22920 0.99001 0.89349 1.16393 1.67515 1.08206 1.30127 1.06005 1.21952 0.90694 0.95778 1.24377 1.19444 0.84705 0.92043 0.90654 1.43566 1.02479 1.08379 1.78701 1.21412 0.86554 0.89959 0.99660 0.85314 1.23577 1.05040 1.03436 0.91047 1.22644 1.01356 0.97600 0.96862 1.21057 1.00015 0.96167 0.94475 1.22158 1.03136 0.97580 0.96168 1.22485 0.94885 0.87096 0.96846 1.87977 1.73925 1.49448 1.18318 1.22119 0.99643 0.94444 0.81129 1.69017 1.08440 1.22200 1.23707 0.91538 0.85227 0.86134 0.76698 0.88340 0.88536 0.91780 0.91187 0.91069 0.90381 0.93620 0.89205 0.88719 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.30 11.51 55.55 0.64 -17.66 16 2 C 0.07 1.69 5.49 -17.34 -0.10 1.59 16 3 Si 0.91 18.02 29.56 -169.99 -5.03 13.00 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.42 -10.91 9.15 -37.75 -0.35 -11.25 16 8 H 0.09 2.18 7.85 -52.49 -0.41 1.77 16 9 C 0.25 6.78 6.54 -84.83 -0.55 6.22 16 10 C -0.11 -2.79 10.97 -16.59 -0.18 -2.97 16 11 N -0.41 -10.52 10.47 -12.11 -0.13 -10.65 16 12 C -0.17 -4.05 10.52 -16.78 -0.18 -4.23 16 13 C 0.37 9.15 7.66 -155.00 -1.19 7.97 16 14 N -0.70 -13.75 5.55 -53.89 -0.30 -14.05 16 15 C 0.13 2.10 5.98 -68.03 -0.41 1.69 16 16 H 0.13 2.06 5.88 -51.93 -0.31 1.75 16 17 C -0.19 -2.42 9.93 -26.84 -0.27 -2.68 16 18 C -0.18 -2.33 2.14 -154.53 -0.33 -2.66 16 19 C -0.08 -0.98 5.59 -26.38 -0.15 -1.13 16 20 C -0.15 -1.88 6.16 -26.50 -0.16 -2.04 16 21 C 0.06 0.72 6.72 37.18 0.25 0.97 16 22 O -0.38 -5.15 10.77 -35.23 -0.38 -5.53 16 23 C 0.10 1.20 6.63 37.25 0.25 1.45 16 24 N -0.51 -13.88 8.10 -10.14 -0.08 -13.97 16 25 H 0.27 6.36 8.29 -40.82 -0.34 6.03 16 26 H 0.13 3.08 8.06 -52.49 -0.42 2.66 16 27 H 0.12 2.59 5.86 -52.49 -0.31 2.28 16 28 H 0.40 7.78 6.88 -40.82 -0.28 7.50 16 29 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.96 6.14 -51.93 -0.32 0.64 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.00 8.08 -51.93 -0.42 0.59 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 312.95 15.07 4.72 4.72 Total: -1.00 -30.11 312.95 -8.90 -39.01 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -4.98 Total: 12.21 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -3.36 Total: -7.07 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.13 Total: -56.33 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.38 Total: -5.53 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.11 -8.90 -39.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162374973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.128 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds