Wall clock time and date at job start Mon Mar 30 2020 02:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86797 * 120.00273 * 2 1 4 4 H 1.48500 * 109.47396 * 269.99676 * 3 2 1 5 5 H 1.48509 * 109.47086 * 29.99867 * 3 2 1 6 6 H 1.48500 * 109.47354 * 149.99823 * 3 2 1 7 7 C 1.40060 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00484 * 173.78812 * 7 2 1 9 9 C 1.41277 * 119.99849 * 353.78536 * 7 2 1 10 10 C 1.40717 * 120.16062 * 186.36490 * 9 7 2 11 11 N 1.31903 * 119.93005 * 180.02562 * 10 9 7 12 12 C 1.32157 * 120.27325 * 0.02562 * 11 10 9 13 13 C 1.39918 * 120.31764 * 359.97438 * 12 11 10 14 14 N 1.38836 * 119.96741 * 179.97438 * 13 12 11 15 15 C 1.46505 * 119.99678 * 4.87482 * 14 13 12 16 16 H 1.08997 * 115.55715 * 347.39585 * 15 14 13 17 17 C 1.53041 * 117.53003 * 133.14660 * 15 14 13 18 18 C 1.52740 * 59.94425 * 107.45527 * 17 15 14 19 19 C 1.53269 * 117.80961 * 252.27977 * 18 17 15 20 20 C 1.53407 * 108.35553 * 163.59662 * 19 18 17 21 21 C 1.53049 * 109.08440 * 53.64215 * 20 19 18 22 22 O 1.42828 * 109.83277 * 299.23832 * 21 20 19 23 23 C 1.43137 * 114.09027 * 64.23358 * 22 21 20 24 24 N 1.32263 * 120.07006 * 0.26054 * 13 12 11 25 25 H 0.96999 * 120.00004 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.03151 * 0.04903 * 10 9 7 27 27 H 1.07998 * 119.83783 * 179.97438 * 12 11 10 28 28 H 0.96996 * 120.00497 * 184.88238 * 14 13 12 29 29 H 1.09002 * 117.50371 * 214.92756 * 17 15 14 30 30 H 1.08995 * 117.50770 * 359.97438 * 17 15 14 31 31 H 1.09005 * 109.68573 * 283.30541 * 19 18 17 32 32 H 1.08994 * 109.68989 * 43.83760 * 19 18 17 33 33 H 1.08999 * 109.53134 * 173.52895 * 20 19 18 34 34 H 1.09003 * 109.53216 * 293.76451 * 20 19 18 35 35 H 1.09001 * 109.41048 * 59.34963 * 21 20 19 36 36 H 1.09001 * 109.41170 * 179.12543 * 21 20 19 37 37 H 1.08996 * 109.59869 * 182.79249 * 23 22 21 38 38 H 1.08998 * 109.59232 * 62.34510 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4889 2.0464 -1.4000 5 1 1.4387 2.6527 0.7001 6 1 3.5389 1.4401 0.7001 7 6 2.0076 -1.2129 0.0005 8 1 3.0828 -1.2157 -0.1007 9 6 1.3075 -2.4328 0.1335 10 6 2.0139 -3.6422 0.2690 11 7 1.3556 -4.7786 0.3924 12 6 0.0340 -4.7867 0.3888 13 6 -0.6793 -3.5905 0.2548 14 7 -2.0676 -3.6076 0.2515 15 6 -2.7852 -4.8614 0.4950 16 1 -2.1780 -5.7658 0.4573 17 6 -3.9455 -4.8301 1.4924 18 6 -4.2260 -4.9578 -0.0036 19 6 -4.8140 -3.7414 -0.7272 20 6 -4.6270 -3.9404 -2.2368 21 6 -5.2183 -5.2931 -2.6403 22 8 -4.5413 -6.3436 -1.9487 23 6 -4.7119 -6.3125 -0.5279 24 7 -0.0325 -2.4441 0.1256 25 1 -0.4850 0.8400 -0.0004 26 1 3.0938 -3.6400 0.2723 27 1 -0.4978 -5.7212 0.4899 28 1 -2.5623 -2.7895 0.0879 29 1 -4.1015 -5.7139 2.1111 30 1 -4.1749 -3.8767 1.9681 31 1 -5.8760 -3.6552 -0.4971 32 1 -4.2946 -2.8378 -0.4082 33 1 -5.1391 -3.1432 -2.7756 34 1 -3.5642 -3.9206 -2.4781 35 1 -6.2779 -5.3157 -2.3856 36 1 -5.1021 -5.4332 -3.7150 37 1 -4.1278 -7.1119 -0.0720 38 1 -5.7662 -6.4423 -0.2835 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162374973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:08 Heat of formation + Delta-G solvation = 5.759639 kcal Electronic energy + Delta-G solvation = -21165.123252 eV Core-core repulsion = 18007.358897 eV Total energy + Delta-G solvation = -3157.764355 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.17922 -40.48812 -38.03895 -35.90908 -35.08848 -33.66331 -33.15961 -30.64257 -28.68640 -27.81756 -26.18548 -24.42997 -23.88140 -23.10937 -22.28664 -20.09794 -19.21090 -18.50014 -17.46791 -17.10746 -16.96408 -16.77074 -16.47126 -15.89120 -15.76035 -15.20778 -15.07162 -14.73899 -14.10736 -13.94978 -13.63375 -13.33625 -13.27806 -13.09792 -12.88829 -12.80628 -12.48124 -12.16844 -12.05910 -12.03358 -11.62946 -11.54205 -11.38883 -11.07883 -10.70935 -10.47308 -10.07465 -9.34111 -8.39997 -8.34742 -6.65365 0.81079 1.23360 1.41456 1.53205 1.58477 2.20307 2.33515 2.65853 2.83473 3.17567 3.63268 3.67731 3.81529 3.89745 3.96930 4.03379 4.12450 4.25566 4.40524 4.45726 4.47332 4.62021 4.65284 4.71064 4.83435 4.84381 4.90497 4.95536 5.02851 5.06012 5.13895 5.23143 5.27352 5.29650 5.70429 6.07495 6.23989 6.28460 6.62627 6.66442 6.96364 7.44493 8.05216 8.33548 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022466 B = 0.004774 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.039996 B = 5863.085962 C = 6489.816661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.024 3.976 3 Si 0.994 3.006 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.252 1.252 7 C -0.441 4.441 8 H 0.102 0.898 9 C 0.216 3.784 10 C -0.134 4.134 11 N -0.416 5.416 12 C -0.176 4.176 13 C 0.369 3.631 14 N -0.688 5.688 15 C 0.090 3.910 16 H 0.124 0.876 17 C -0.167 4.167 18 C -0.163 4.163 19 C -0.082 4.082 20 C -0.151 4.151 21 C 0.062 3.938 22 O -0.403 6.403 23 C 0.100 3.900 24 N -0.540 5.540 25 H 0.282 0.718 26 H 0.143 0.857 27 H 0.146 0.854 28 H 0.394 0.606 29 H 0.126 0.874 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.500 -4.180 -0.900 14.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.200 4.200 3 Si 0.813 3.187 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.176 1.176 7 C -0.474 4.474 8 H 0.120 0.880 9 C 0.088 3.912 10 C -0.303 4.303 11 N -0.128 5.128 12 C -0.338 4.338 13 C 0.124 3.876 14 N -0.321 5.321 15 C -0.017 4.017 16 H 0.141 0.859 17 C -0.206 4.206 18 C -0.165 4.165 19 C -0.119 4.119 20 C -0.189 4.189 21 C -0.014 4.014 22 O -0.322 6.322 23 C 0.024 3.976 24 N -0.267 5.267 25 H 0.093 0.907 26 H 0.160 0.840 27 H 0.163 0.837 28 H 0.231 0.769 29 H 0.144 0.856 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.610 -4.413 -0.974 14.341 hybrid contribution 0.252 1.277 0.082 1.304 sum -13.358 -3.136 -0.892 13.751 Atomic orbital electron populations 1.70191 1.09130 1.29546 1.27625 1.27109 0.95775 1.04803 0.92293 0.85030 0.79061 0.74981 0.79610 1.18518 1.19270 1.17572 1.20060 0.95751 0.89944 1.41618 0.88044 1.19536 0.88302 0.94343 0.89009 1.23086 0.99695 0.89348 1.18184 1.67510 1.09007 1.30117 1.06130 1.22371 0.90503 0.96878 1.24056 1.19765 0.86585 0.91552 0.89687 1.43642 1.00821 1.09922 1.77744 1.21703 0.87892 0.88026 1.04105 0.85868 1.23613 1.01255 1.04513 0.91216 1.22717 0.97972 0.98739 0.97056 1.21111 1.01310 0.95149 0.94371 1.22133 1.00976 0.99261 0.96483 1.22618 0.95929 0.85639 0.97255 1.87954 1.74684 1.50181 1.19382 1.22317 1.01427 0.93572 0.80283 1.69033 1.08697 1.23566 1.25411 0.90723 0.83988 0.83671 0.76895 0.85582 0.88821 0.89079 0.93098 0.89415 0.94248 0.90994 0.88429 0.87881 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.97 11.51 21.84 0.25 -38.72 16 2 C 0.02 1.17 5.49 85.30 0.47 1.64 16 3 Si 0.99 36.73 29.56 68.60 2.03 38.76 16 4 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 5 H -0.27 -9.48 7.11 99.48 0.71 -8.78 16 6 H -0.25 -8.97 7.11 99.48 0.71 -8.27 16 7 C -0.44 -23.68 9.15 23.46 0.21 -23.47 16 8 H 0.10 4.98 7.85 -2.91 -0.02 4.96 16 9 C 0.22 12.34 6.54 40.16 0.26 12.60 16 10 C -0.13 -7.28 10.97 85.29 0.94 -6.35 16 11 N -0.42 -22.06 10.47 -192.24 -2.01 -24.07 16 12 C -0.18 -8.73 10.52 85.05 0.89 -7.83 16 13 C 0.37 18.59 7.66 133.35 1.02 19.61 16 14 N -0.69 -27.73 5.55 -324.41 -1.80 -29.53 16 15 C 0.09 2.77 5.98 44.92 0.27 3.04 16 16 H 0.12 3.88 5.88 -2.39 -0.01 3.87 16 17 C -0.17 -3.82 9.93 30.52 0.30 -3.52 16 18 C -0.16 -3.82 2.14 -52.20 -0.11 -3.93 16 19 C -0.08 -1.89 5.59 30.82 0.17 -1.72 16 20 C -0.15 -3.56 6.16 30.75 0.19 -3.37 16 21 C 0.06 1.26 6.72 72.00 0.48 1.74 16 22 O -0.40 -10.16 10.77 -148.98 -1.60 -11.76 16 23 C 0.10 2.03 6.63 72.04 0.48 2.51 16 24 N -0.54 -30.61 8.10 -185.99 -1.51 -32.12 16 25 H 0.28 13.24 8.29 -92.71 -0.77 12.47 16 26 H 0.14 7.02 8.06 -2.91 -0.02 7.00 16 27 H 0.15 6.28 5.86 -2.91 -0.02 6.27 16 28 H 0.39 15.98 6.88 -92.71 -0.64 15.34 16 29 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.05 1.37 6.14 -2.39 -0.01 1.36 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.10 1.90 8.08 -2.39 -0.02 1.88 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -67.26 312.95 1.38 -65.87 By element: Atomic # 1 Polarization: 40.16 SS G_CDS: 0.45 Total: 40.60 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 5.58 Total: -9.04 kcal Atomic # 7 Polarization: -119.37 SS G_CDS: -5.07 Total: -124.44 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -1.60 Total: -11.76 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.76 kcal Total: -67.26 1.38 -65.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162374973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.634 kcal (2) G-P(sol) polarization free energy of solvation -67.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds