Wall clock time and date at job start Mon Mar 30 2020 02:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86798 * 120.00249 * 2 1 4 4 H 1.48502 * 109.47249 * 239.99652 * 3 2 1 5 5 H 1.48504 * 109.47024 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47215 * 119.99628 * 3 2 1 7 7 C 1.40029 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99854 * 197.00858 * 7 2 1 9 9 C 1.41555 * 120.00368 * 17.00452 * 7 2 1 10 10 C 1.41181 * 120.99622 * 203.27073 * 9 7 2 11 11 C 1.36553 * 119.14788 * 180.02562 * 10 9 7 12 12 N 1.32102 * 121.26813 * 0.02562 * 11 10 9 13 13 C 1.32532 * 122.21423 * 0.02562 * 12 11 10 14 14 N 1.39076 * 119.65284 * 179.97438 * 13 12 11 15 15 C 1.46505 * 119.99763 * 179.97438 * 14 13 12 16 16 H 1.09000 * 109.21731 * 324.39195 * 15 14 13 17 17 C 1.51788 * 109.22260 * 204.99594 * 15 14 13 18 18 C 1.51779 * 113.70301 * 172.93021 * 17 15 14 19 19 C 1.52782 * 111.01300 * 67.08625 * 18 17 15 20 20 N 1.47192 * 108.56506 * 273.43513 * 19 18 17 21 21 C 1.33365 * 120.43790 * 71.95046 * 20 19 18 22 22 O 1.21280 * 119.90086 * 179.65285 * 21 20 19 23 23 C 1.51434 * 120.21116 * 359.68400 * 21 20 19 24 24 C 1.38744 * 120.68427 * 0.25222 * 13 12 11 25 25 H 0.96999 * 120.00182 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.42555 * 0.02562 * 10 9 7 27 27 H 1.07999 * 119.36897 * 180.02562 * 11 10 9 28 28 H 0.97003 * 120.00510 * 359.97438 * 14 13 12 29 29 H 1.08997 * 108.62128 * 293.97872 * 17 15 14 30 30 H 1.09008 * 108.61707 * 51.88536 * 17 15 14 31 31 H 1.09004 * 109.19730 * 187.29258 * 18 17 15 32 32 H 1.09005 * 109.19457 * 306.56767 * 18 17 15 33 33 H 1.08996 * 109.68268 * 153.69034 * 19 18 17 34 34 H 1.08999 * 109.75837 * 33.21180 * 19 18 17 35 35 H 0.97004 * 119.78407 * 251.93487 * 20 19 18 36 36 H 1.08998 * 109.63520 * 169.08044 * 23 21 20 37 37 H 1.08994 * 109.79842 * 48.57247 * 23 21 20 38 38 H 1.08005 * 120.66115 * 179.71944 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0953 1.6963 -1.2125 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0522 -1.2331 0.2742 9 6 1.3462 -2.4120 -0.3574 10 6 1.8272 -3.6656 0.0788 11 6 1.1600 -4.7987 -0.2893 12 7 0.0771 -4.7423 -1.0438 13 6 -0.4190 -3.5945 -1.4830 14 7 -1.5622 -3.5971 -2.2750 15 6 -2.1173 -2.3326 -2.7641 16 1 -1.9826 -1.5636 -2.0035 17 6 -3.5996 -2.5103 -3.0382 18 6 -4.3146 -1.2181 -3.3884 19 6 -3.8360 -0.6744 -4.7336 20 7 -2.6410 0.1542 -4.5058 21 6 -1.4779 -0.4121 -4.1816 22 8 -0.4979 0.2795 -4.0022 23 6 -1.3767 -1.9161 -4.0374 24 6 0.1937 -2.3908 -1.1656 25 1 -0.4850 0.8400 -0.0004 26 1 2.7114 -3.7276 0.6957 27 1 1.5246 -5.7596 0.0427 28 1 -1.9920 -4.4361 -2.5036 29 1 -3.7192 -3.2094 -3.8658 30 1 -4.0685 -2.9382 -2.1520 31 1 -5.3871 -1.4052 -3.4425 32 1 -4.1193 -0.4786 -2.6118 33 1 -4.6211 -0.0678 -5.1848 34 1 -3.5859 -1.5019 -5.3976 35 1 -2.6997 1.1186 -4.5922 36 1 -0.3289 -2.2073 -3.9634 37 1 -1.8315 -2.4013 -4.9009 38 1 -0.2083 -1.4559 -1.5274 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162452820.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:50 Heat of formation + Delta-G solvation = -10.770390 kcal Electronic energy + Delta-G solvation = -21838.824761 eV Core-core repulsion = 18680.343610 eV Total energy + Delta-G solvation = -3158.481151 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.07219 -38.34668 -36.76998 -35.11913 -33.92263 -32.14495 -30.65798 -29.96098 -27.78537 -26.28808 -25.76604 -23.46010 -21.75493 -20.55881 -20.27525 -19.47266 -17.63518 -17.07773 -16.70663 -15.67010 -15.43928 -14.92819 -14.52647 -14.17621 -13.86592 -13.74137 -13.53218 -13.28915 -12.94775 -12.59175 -12.43343 -12.34570 -12.16447 -11.60710 -11.28189 -11.13658 -11.03672 -10.84031 -10.72306 -10.53664 -10.13597 -9.83394 -9.50181 -9.29406 -8.98568 -8.90802 -7.89328 -7.78201 -6.72308 -6.39873 -4.42945 2.93782 2.96369 3.12698 3.15209 3.17885 3.44262 3.45166 4.00065 4.01645 4.70957 4.74571 4.81993 4.86627 5.00989 5.29808 5.34681 5.49657 5.52038 5.68215 5.84888 5.89408 5.95834 6.06969 6.12250 6.30473 6.45415 6.82247 6.92442 6.98509 7.04618 7.17436 7.38615 7.42998 7.65397 7.94411 8.04491 8.23861 8.52730 8.53329 8.85479 8.96281 8.99272 9.82081 10.23431 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014166 B = 0.008214 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.136020 B = 3408.048801 C = 4896.333384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.084 3.916 3 Si 0.909 3.091 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.455 4.455 8 H 0.078 0.922 9 C 0.150 3.850 10 C -0.302 4.302 11 C 0.128 3.872 12 N -0.624 5.624 13 C 0.378 3.622 14 N -0.737 5.737 15 C 0.173 3.827 16 H 0.091 0.909 17 C -0.127 4.127 18 C -0.137 4.137 19 C 0.110 3.890 20 N -0.732 5.732 21 C 0.520 3.480 22 O -0.534 6.534 23 C -0.152 4.152 24 C -0.274 4.274 25 H 0.279 0.721 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.388 0.612 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.396 0.604 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.834 0.476 -8.561 13.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.136 4.136 3 Si 0.733 3.267 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.486 4.486 8 H 0.097 0.903 9 C 0.142 3.858 10 C -0.327 4.327 11 C -0.024 4.024 12 N -0.347 5.347 13 C 0.151 3.849 14 N -0.372 5.372 15 C 0.066 3.934 16 H 0.109 0.891 17 C -0.165 4.165 18 C -0.176 4.176 19 C -0.015 4.015 20 N -0.386 5.386 21 C 0.306 3.694 22 O -0.409 6.409 23 C -0.194 4.194 24 C -0.301 4.301 25 H 0.090 0.910 26 H 0.114 0.886 27 H 0.135 0.865 28 H 0.221 0.779 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.232 0.768 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.917 0.159 -8.659 13.935 hybrid contribution 0.508 1.566 0.167 1.654 sum -10.409 1.725 -8.492 13.544 Atomic orbital electron populations 1.69752 1.07725 1.29163 1.33766 1.25881 0.94722 1.01276 0.91753 0.86360 0.80231 0.80278 0.79808 1.18623 1.20366 1.19153 1.19537 0.97756 0.90940 1.40379 0.90340 1.17588 0.89990 0.91939 0.86280 1.21479 1.05751 0.94086 1.11391 1.21189 0.90855 0.96522 0.93840 1.66710 1.17732 1.27932 1.22300 1.18109 0.86709 0.90251 0.89837 1.44059 1.29443 1.06230 1.57474 1.20229 0.90589 0.88376 0.94241 0.89123 1.21400 0.94823 0.97829 1.02470 1.21739 1.00101 0.97908 0.97895 1.21715 0.87129 0.95602 0.97021 1.45989 1.09992 1.10374 1.72230 1.20549 0.82341 0.91281 0.75269 1.90799 1.36350 1.64828 1.48955 1.22597 1.05179 0.91463 1.00202 1.21615 1.03239 0.96176 1.09050 0.90996 0.88558 0.86520 0.77874 0.91727 0.90865 0.90474 0.90643 0.89801 0.90667 0.76809 0.87807 0.90053 0.85036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.86 10.92 55.55 0.61 -20.25 16 2 C 0.08 2.21 5.20 -17.34 -0.09 2.12 16 3 Si 0.91 20.15 29.59 -169.99 -5.03 15.12 16 4 H -0.26 -5.90 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.46 -12.65 9.12 -37.65 -0.34 -13.00 16 8 H 0.08 2.08 7.90 -52.48 -0.41 1.67 16 9 C 0.15 4.21 5.60 -106.56 -0.60 3.61 16 10 C -0.30 -7.76 9.85 -39.07 -0.38 -8.15 16 11 C 0.13 3.09 11.10 -18.04 -0.20 2.89 16 12 N -0.62 -15.42 10.37 -12.82 -0.13 -15.55 16 13 C 0.38 9.22 7.49 -154.98 -1.16 8.06 16 14 N -0.74 -14.14 5.21 -54.55 -0.28 -14.43 16 15 C 0.17 2.88 1.95 -68.51 -0.13 2.75 16 16 H 0.09 1.87 6.20 -51.93 -0.32 1.55 16 17 C -0.13 -1.47 4.72 -27.97 -0.13 -1.61 16 18 C -0.14 -1.28 5.71 -27.46 -0.16 -1.44 16 19 C 0.11 0.92 6.46 -3.78 -0.02 0.90 16 20 N -0.73 -8.96 5.27 -60.01 -0.32 -9.28 16 21 C 0.52 8.96 7.06 -11.25 -0.08 8.89 16 22 O -0.53 -12.06 17.92 5.56 0.10 -11.96 16 23 C -0.15 -2.49 4.94 -27.49 -0.14 -2.63 16 24 C -0.27 -7.39 7.62 -38.44 -0.29 -7.68 16 25 H 0.28 6.93 8.29 -40.82 -0.34 6.59 16 26 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 27 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 28 H 0.39 6.64 8.71 -40.82 -0.36 6.28 16 29 H 0.06 0.62 7.89 -51.93 -0.41 0.21 16 30 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.58 6.73 -51.93 -0.35 0.23 16 35 H 0.40 4.42 8.91 -40.82 -0.36 4.05 16 36 H 0.10 2.08 7.74 -51.93 -0.40 1.67 16 37 H 0.08 1.04 6.79 -51.93 -0.35 0.69 16 38 H 0.13 3.65 4.28 -52.48 -0.22 3.42 16 LS Contribution 309.44 15.07 4.66 4.66 Total: -1.00 -33.11 309.44 -8.98 -42.10 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -4.86 Total: 14.86 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -3.73 Total: -5.28 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.13 Total: -59.51 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.10 Total: -11.96 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.11 -8.98 -42.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162452820.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.326 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds