Wall clock time and date at job start Mon Mar 30 2020 02:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86798 * 120.00249 * 2 1 4 4 H 1.48502 * 109.47249 * 239.99652 * 3 2 1 5 5 H 1.48504 * 109.47024 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47215 * 119.99628 * 3 2 1 7 7 C 1.40029 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99854 * 197.00858 * 7 2 1 9 9 C 1.41555 * 120.00368 * 17.00452 * 7 2 1 10 10 C 1.41181 * 120.99622 * 203.27073 * 9 7 2 11 11 C 1.36553 * 119.14788 * 180.02562 * 10 9 7 12 12 N 1.32102 * 121.26813 * 0.02562 * 11 10 9 13 13 C 1.32532 * 122.21423 * 0.02562 * 12 11 10 14 14 N 1.39076 * 119.65284 * 179.97438 * 13 12 11 15 15 C 1.46505 * 119.99763 * 179.97438 * 14 13 12 16 16 H 1.09000 * 109.21731 * 324.39195 * 15 14 13 17 17 C 1.51788 * 109.22260 * 204.99594 * 15 14 13 18 18 C 1.51779 * 113.70301 * 172.93021 * 17 15 14 19 19 C 1.52782 * 111.01300 * 67.08625 * 18 17 15 20 20 N 1.47192 * 108.56506 * 273.43513 * 19 18 17 21 21 C 1.33365 * 120.43790 * 71.95046 * 20 19 18 22 22 O 1.21280 * 119.90086 * 179.65285 * 21 20 19 23 23 C 1.51434 * 120.21116 * 359.68400 * 21 20 19 24 24 C 1.38744 * 120.68427 * 0.25222 * 13 12 11 25 25 H 0.96999 * 120.00182 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.42555 * 0.02562 * 10 9 7 27 27 H 1.07999 * 119.36897 * 180.02562 * 11 10 9 28 28 H 0.97003 * 120.00510 * 359.97438 * 14 13 12 29 29 H 1.08997 * 108.62128 * 293.97872 * 17 15 14 30 30 H 1.09008 * 108.61707 * 51.88536 * 17 15 14 31 31 H 1.09004 * 109.19730 * 187.29258 * 18 17 15 32 32 H 1.09005 * 109.19457 * 306.56767 * 18 17 15 33 33 H 1.08996 * 109.68268 * 153.69034 * 19 18 17 34 34 H 1.08999 * 109.75837 * 33.21180 * 19 18 17 35 35 H 0.97004 * 119.78407 * 251.93487 * 20 19 18 36 36 H 1.08998 * 109.63520 * 169.08044 * 23 21 20 37 37 H 1.08994 * 109.79842 * 48.57247 * 23 21 20 38 38 H 1.08005 * 120.66115 * 179.71944 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0953 1.6963 -1.2125 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0522 -1.2331 0.2742 9 6 1.3462 -2.4120 -0.3574 10 6 1.8272 -3.6656 0.0788 11 6 1.1600 -4.7987 -0.2893 12 7 0.0771 -4.7423 -1.0438 13 6 -0.4190 -3.5945 -1.4830 14 7 -1.5622 -3.5971 -2.2750 15 6 -2.1173 -2.3326 -2.7641 16 1 -1.9826 -1.5636 -2.0035 17 6 -3.5996 -2.5103 -3.0382 18 6 -4.3146 -1.2181 -3.3884 19 6 -3.8360 -0.6744 -4.7336 20 7 -2.6410 0.1542 -4.5058 21 6 -1.4779 -0.4121 -4.1816 22 8 -0.4979 0.2795 -4.0022 23 6 -1.3767 -1.9161 -4.0374 24 6 0.1937 -2.3908 -1.1656 25 1 -0.4850 0.8400 -0.0004 26 1 2.7114 -3.7276 0.6957 27 1 1.5246 -5.7596 0.0427 28 1 -1.9920 -4.4361 -2.5036 29 1 -3.7192 -3.2094 -3.8658 30 1 -4.0685 -2.9382 -2.1520 31 1 -5.3871 -1.4052 -3.4425 32 1 -4.1193 -0.4786 -2.6118 33 1 -4.6211 -0.0678 -5.1848 34 1 -3.5859 -1.5019 -5.3976 35 1 -2.6997 1.1186 -4.5922 36 1 -0.3289 -2.2073 -3.9634 37 1 -1.8315 -2.4013 -4.9009 38 1 -0.2083 -1.4559 -1.5274 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162452820.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:50 Heat of formation + Delta-G solvation = -35.277476 kcal Electronic energy + Delta-G solvation = -21839.887468 eV Core-core repulsion = 18680.343610 eV Total energy + Delta-G solvation = -3159.543858 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.36917 -40.19047 -38.15517 -36.49432 -35.86966 -33.46492 -32.43138 -31.52651 -29.52445 -27.84087 -27.31017 -24.79551 -23.50777 -22.31214 -21.53640 -20.71100 -19.55028 -18.26718 -17.97665 -17.37528 -17.25744 -16.51310 -16.04490 -15.88393 -15.28313 -15.21783 -14.86392 -14.60732 -14.54324 -14.32488 -14.03070 -13.70205 -13.51859 -13.19649 -12.92702 -12.74594 -12.54658 -12.10988 -12.00077 -11.92698 -11.75693 -11.69050 -11.27037 -10.93096 -10.65856 -10.07230 -9.90163 -9.81620 -8.70865 -8.23144 -6.52482 1.04253 1.13300 1.30652 1.42121 1.55185 1.62681 2.15017 2.33994 2.55105 2.82617 3.67639 3.72426 3.79121 3.91923 4.02630 4.21879 4.28595 4.38090 4.53607 4.62787 4.74184 4.80336 4.88785 4.97283 5.03725 5.10202 5.15186 5.20293 5.22362 5.36529 5.40525 5.64371 5.96637 5.99955 6.09545 6.26878 6.34414 6.61951 6.90188 6.93664 7.10493 7.28180 7.87824 8.24975 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014166 B = 0.008214 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.136020 B = 3408.048801 C = 4896.333384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.042 3.958 3 Si 0.974 3.026 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.248 1.248 7 C -0.491 4.491 8 H 0.079 0.921 9 C 0.117 3.883 10 C -0.323 4.323 11 C 0.131 3.869 12 N -0.627 5.627 13 C 0.379 3.621 14 N -0.722 5.722 15 C 0.176 3.824 16 H 0.042 0.958 17 C -0.120 4.120 18 C -0.134 4.134 19 C 0.103 3.897 20 N -0.714 5.714 21 C 0.515 3.485 22 O -0.603 6.603 23 C -0.144 4.144 24 C -0.300 4.300 25 H 0.284 0.716 26 H 0.107 0.893 27 H 0.157 0.843 28 H 0.402 0.598 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.049 0.951 33 H 0.126 0.874 34 H 0.094 0.906 35 H 0.403 0.597 36 H 0.058 0.942 37 H 0.126 0.874 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.272 -0.018 -9.965 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.176 4.176 3 Si 0.795 3.205 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.172 1.172 7 C -0.522 4.522 8 H 0.097 0.903 9 C 0.109 3.891 10 C -0.348 4.348 11 C -0.022 4.022 12 N -0.351 5.351 13 C 0.150 3.850 14 N -0.358 5.358 15 C 0.069 3.931 16 H 0.060 0.940 17 C -0.158 4.158 18 C -0.172 4.172 19 C -0.019 4.019 20 N -0.366 5.366 21 C 0.301 3.699 22 O -0.484 6.484 23 C -0.186 4.186 24 C -0.327 4.327 25 H 0.094 0.906 26 H 0.125 0.875 27 H 0.174 0.826 28 H 0.238 0.762 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.135 0.865 32 H 0.068 0.932 33 H 0.144 0.856 34 H 0.113 0.887 35 H 0.239 0.761 36 H 0.077 0.923 37 H 0.144 0.856 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.453 -0.355 -10.088 16.819 hybrid contribution 1.149 1.621 0.563 2.065 sum -12.304 1.266 -9.525 15.611 Atomic orbital electron populations 1.69816 1.08934 1.30112 1.33885 1.26706 0.95549 1.04328 0.91004 0.85369 0.79069 0.76085 0.79959 1.19427 1.19258 1.17198 1.19817 0.98081 0.92132 1.42160 0.90306 1.18058 0.90919 0.93195 0.86971 1.21674 1.06735 0.93985 1.12408 1.21787 0.90116 0.97682 0.92589 1.66914 1.18046 1.27516 1.22613 1.18352 0.87629 0.89500 0.89554 1.44094 1.27688 1.07999 1.56007 1.20334 0.94110 0.85868 0.92759 0.93958 1.21401 0.90460 1.00137 1.03838 1.21760 1.02118 0.95859 0.97488 1.22158 0.86200 0.96513 0.97041 1.45981 1.09710 1.11292 1.69568 1.20719 0.82919 0.91412 0.74840 1.90760 1.39144 1.66053 1.52483 1.22453 1.02815 0.91560 1.01735 1.21574 1.04064 0.96724 1.10344 0.90602 0.87463 0.82589 0.76195 0.88261 0.91070 0.86466 0.93166 0.85575 0.88738 0.76064 0.92305 0.85561 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -45.11 10.92 21.84 0.24 -44.87 16 2 C 0.04 2.30 5.20 85.29 0.44 2.74 16 3 Si 0.97 42.69 29.59 68.60 2.03 44.72 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 7 C -0.49 -28.67 9.12 23.52 0.21 -28.45 16 8 H 0.08 4.39 7.90 -2.91 -0.02 4.37 16 9 C 0.12 6.85 5.60 -21.12 -0.12 6.73 16 10 C -0.32 -17.01 9.85 22.60 0.22 -16.79 16 11 C 0.13 6.25 11.10 84.26 0.94 7.19 16 12 N -0.63 -30.86 10.37 -194.47 -2.02 -32.87 16 13 C 0.38 18.88 7.49 132.90 0.99 19.88 16 14 N -0.72 -27.54 5.21 -326.49 -1.70 -29.24 16 15 C 0.18 5.83 1.95 44.62 0.09 5.92 16 16 H 0.04 1.84 6.20 -2.39 -0.01 1.82 16 17 C -0.12 -2.43 4.72 29.79 0.14 -2.29 16 18 C -0.13 -1.99 5.71 30.12 0.17 -1.82 16 19 C 0.10 1.27 6.46 86.17 0.56 1.83 16 20 N -0.71 -16.36 5.27 -462.95 -2.44 -18.80 16 21 C 0.51 18.08 7.06 88.11 0.62 18.71 16 22 O -0.60 -28.91 17.92 -3.03 -0.05 -28.96 16 23 C -0.14 -4.70 4.94 30.10 0.15 -4.55 16 24 C -0.30 -17.02 7.62 23.01 0.18 -16.84 16 25 H 0.28 14.73 8.29 -92.71 -0.77 13.96 16 26 H 0.11 5.23 8.06 -2.91 -0.02 5.21 16 27 H 0.16 6.10 8.06 -2.91 -0.02 6.08 16 28 H 0.40 13.04 8.71 -92.71 -0.81 12.24 16 29 H 0.10 1.38 7.89 -2.39 -0.02 1.36 16 30 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.05 1.04 8.05 -2.38 -0.02 1.02 16 33 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 0.91 6.73 -2.39 -0.02 0.89 16 35 H 0.40 8.46 8.91 -92.71 -0.83 7.64 16 36 H 0.06 2.47 7.74 -2.39 -0.02 2.46 16 37 H 0.13 2.87 6.79 -2.39 -0.02 2.85 16 38 H 0.12 6.91 4.28 -2.91 -0.01 6.89 16 Total: -1.00 -79.22 309.44 0.13 -79.09 By element: Atomic # 1 Polarization: 39.22 SS G_CDS: -0.53 Total: 38.69 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 4.59 Total: -7.76 kcal Atomic # 7 Polarization: -119.86 SS G_CDS: -5.92 Total: -125.78 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.05 Total: -28.96 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -79.22 0.13 -79.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162452820.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.814 kcal (2) G-P(sol) polarization free energy of solvation -79.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds