Wall clock time and date at job start Mon Mar 30 2020 02:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86803 * 120.00048 * 2 1 4 4 H 1.48501 * 109.47134 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46889 * 299.99883 * 3 2 1 6 6 H 1.48496 * 109.47207 * 59.99948 * 3 2 1 7 7 C 1.40034 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99914 * 163.14770 * 7 2 1 9 9 C 1.41549 * 120.00060 * 343.13949 * 7 2 1 10 10 C 1.41195 * 120.99291 * 336.12611 * 9 7 2 11 11 C 1.36548 * 119.14522 * 179.97438 * 10 9 7 12 12 N 1.32101 * 121.27049 * 359.97438 * 11 10 9 13 13 C 1.32521 * 122.21503 * 0.02562 * 12 11 10 14 14 N 1.39082 * 119.65736 * 179.97438 * 13 12 11 15 15 C 1.46504 * 120.00075 * 180.02562 * 14 13 12 16 16 H 1.08995 * 109.21929 * 34.39130 * 15 14 13 17 17 C 1.51807 * 109.22431 * 153.79477 * 15 14 13 18 18 C 1.51778 * 113.79852 * 187.18205 * 17 15 14 19 19 C 1.52984 * 110.84611 * 292.91970 * 18 17 15 20 20 N 1.47198 * 108.66641 * 86.49416 * 19 18 17 21 21 C 1.33374 * 120.42131 * 288.04150 * 20 19 18 22 22 O 1.21276 * 119.88849 * 180.26295 * 21 20 19 23 23 C 1.51424 * 120.21960 * 0.28444 * 21 20 19 24 24 C 1.38749 * 120.68776 * 0.25418 * 13 12 11 25 25 H 0.96996 * 120.00131 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.42663 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.36549 * 180.02562 * 11 10 9 28 28 H 0.96999 * 120.00132 * 359.97438 * 14 13 12 29 29 H 1.08990 * 108.66234 * 66.03690 * 17 15 14 30 30 H 1.08994 * 108.57574 * 308.26549 * 17 15 14 31 31 H 1.09003 * 109.19551 * 172.58004 * 18 17 15 32 32 H 1.09006 * 109.19624 * 53.25979 * 18 17 15 33 33 H 1.09001 * 109.60331 * 206.24623 * 19 18 17 34 34 H 1.08997 * 109.60536 * 326.56931 * 19 18 17 35 35 H 0.96989 * 119.78475 * 108.02479 * 20 19 18 36 36 H 1.08996 * 109.62933 * 190.93440 * 23 21 20 37 37 H 1.09001 * 109.63252 * 311.32753 * 23 21 20 38 38 H 1.08005 * 120.66771 * 179.74274 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.7015 1.3464 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8827 2.3965 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0528 -1.2327 -0.2717 9 6 1.3455 -2.4124 0.3545 10 6 0.1906 -2.3926 1.1664 11 6 -0.4185 -3.5723 1.4854 12 7 0.0520 -4.7269 1.0488 13 6 1.1316 -4.8062 0.2842 14 7 1.5810 -6.0504 -0.1451 15 6 2.7739 -6.1468 -0.9901 16 1 3.4812 -5.3690 -0.7024 17 6 3.4184 -7.5068 -0.7917 18 6 4.7592 -7.6565 -1.4871 19 6 4.5894 -7.6353 -3.0073 20 7 4.6084 -6.2361 -3.4640 21 6 3.5749 -5.4304 -3.2152 22 8 3.5987 -4.2806 -3.6001 23 6 2.3723 -5.9465 -2.4535 24 6 1.8216 -3.6613 -0.0876 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2065 -1.4562 1.5298 27 1 -1.3024 -3.5613 2.1059 28 1 1.1050 -6.8544 0.1154 29 1 2.7419 -8.2721 -1.1720 30 1 3.5600 -7.6715 0.2764 31 1 5.2132 -8.6020 -1.1903 32 1 5.4117 -6.8362 -1.1878 33 1 5.4076 -8.1835 -3.4743 34 1 3.6395 -8.0974 -3.2757 35 1 5.3774 -5.8978 -3.9486 36 1 1.5612 -5.2211 -2.5147 37 1 2.0479 -6.8955 -2.8805 38 1 2.7037 -3.7266 -0.7073 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162452823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:54 Heat of formation + Delta-G solvation = -11.048412 kcal Electronic energy + Delta-G solvation = -21303.121536 eV Core-core repulsion = 18144.628329 eV Total energy + Delta-G solvation = -3158.493207 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.18950 -38.39080 -36.88386 -35.26329 -33.91493 -32.16703 -30.67498 -30.20966 -27.79116 -26.38209 -25.79008 -23.56266 -21.70527 -20.77201 -20.33651 -19.58037 -17.63218 -17.18211 -16.77277 -15.96602 -15.37730 -14.86097 -14.75433 -14.28543 -13.90778 -13.82061 -13.59096 -13.38474 -13.02886 -12.73541 -12.49651 -12.26863 -12.23062 -11.71073 -11.32744 -11.24664 -11.10569 -10.95410 -10.83026 -10.63502 -10.20600 -9.79222 -9.60783 -9.35010 -9.10504 -8.95232 -7.88986 -7.85132 -6.76719 -6.44891 -4.46429 2.82017 2.85386 3.10001 3.12192 3.16912 3.33092 3.41253 3.88543 3.97025 4.60490 4.62963 4.71836 4.79120 4.90496 5.19855 5.23627 5.37692 5.40007 5.56935 5.74451 5.82442 5.86713 5.96886 6.07061 6.21996 6.32017 6.81613 6.87270 6.96171 7.05130 7.08375 7.31119 7.34144 7.61852 7.90217 8.10172 8.13679 8.40535 8.51610 8.75479 8.92649 8.96341 9.81509 10.19103 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018991 B = 0.005520 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.063679 B = 5071.615732 C = 6146.510822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.079 3.921 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.452 4.452 8 H 0.079 0.921 9 C 0.155 3.845 10 C -0.243 4.243 11 C 0.113 3.887 12 N -0.623 5.623 13 C 0.393 3.607 14 N -0.738 5.738 15 C 0.177 3.823 16 H 0.081 0.919 17 C -0.129 4.129 18 C -0.137 4.137 19 C 0.109 3.891 20 N -0.731 5.731 21 C 0.518 3.482 22 O -0.536 6.536 23 C -0.154 4.154 24 C -0.329 4.329 25 H 0.281 0.719 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.390 0.610 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.397 0.603 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.943 -13.619 -3.813 16.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.483 4.483 8 H 0.097 0.903 9 C 0.147 3.853 10 C -0.267 4.267 11 C -0.036 4.036 12 N -0.347 5.347 13 C 0.163 3.837 14 N -0.374 5.374 15 C 0.069 3.931 16 H 0.099 0.901 17 C -0.167 4.167 18 C -0.176 4.176 19 C -0.016 4.016 20 N -0.385 5.385 21 C 0.304 3.696 22 O -0.411 6.411 23 C -0.196 4.196 24 C -0.356 4.356 25 H 0.092 0.908 26 H 0.140 0.860 27 H 0.135 0.865 28 H 0.224 0.776 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.233 0.767 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.239 -13.599 -3.743 15.854 hybrid contribution 0.826 1.323 -0.414 1.614 sum 8.066 -12.276 -4.157 15.266 Atomic orbital electron populations 1.69813 1.07687 1.29214 1.34245 1.25959 0.94718 1.01442 0.91897 0.86246 0.81101 0.80766 0.78554 1.18310 1.19861 1.19636 1.19627 0.97884 0.90826 1.39913 0.90263 1.17608 0.89843 0.91711 0.86168 1.21783 1.01509 0.98077 1.05345 1.21331 0.97317 0.87905 0.97048 1.66720 1.16595 1.29872 1.21495 1.17906 0.90277 0.84483 0.91008 1.44099 1.30489 1.05693 1.57109 1.20168 0.87972 0.97389 0.87589 0.90079 1.21423 0.96517 0.96848 1.01934 1.21778 0.97647 1.03185 0.94990 1.21759 1.03037 0.82290 0.94503 1.46003 1.20859 1.12304 1.59371 1.20606 0.84474 0.85469 0.79046 1.90807 1.80740 1.17966 1.51627 1.22626 0.96955 1.03480 0.96552 1.21184 1.07195 0.92210 1.15024 0.90841 0.85977 0.86490 0.77647 0.91498 0.90817 0.90306 0.90807 0.89709 0.90546 0.76715 0.87533 0.89808 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.80 10.92 55.55 0.61 -20.19 16 2 C 0.08 2.06 5.20 -17.34 -0.09 1.97 16 3 Si 0.91 19.33 29.59 -169.99 -5.03 14.30 16 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.45 -12.58 9.12 -37.65 -0.34 -12.93 16 8 H 0.08 2.17 7.90 -52.49 -0.41 1.76 16 9 C 0.15 4.35 5.60 -106.56 -0.60 3.75 16 10 C -0.24 -6.55 8.74 -39.07 -0.34 -6.90 16 11 C 0.11 2.83 11.10 -18.05 -0.20 2.63 16 12 N -0.62 -15.40 10.37 -12.82 -0.13 -15.53 16 13 C 0.39 9.29 7.54 -154.98 -1.17 8.12 16 14 N -0.74 -13.32 5.19 -54.54 -0.28 -13.60 16 15 C 0.18 2.64 1.96 -68.50 -0.13 2.51 16 16 H 0.08 1.44 6.11 -51.93 -0.32 1.12 16 17 C -0.13 -1.30 4.72 -27.96 -0.13 -1.43 16 18 C -0.14 -1.07 5.74 -27.36 -0.16 -1.22 16 19 C 0.11 0.77 6.46 -3.67 -0.02 0.75 16 20 N -0.73 -7.94 5.27 -59.90 -0.32 -8.25 16 21 C 0.52 8.20 7.06 -11.25 -0.08 8.12 16 22 O -0.54 -11.39 17.92 5.56 0.10 -11.29 16 23 C -0.15 -2.33 5.07 -27.49 -0.14 -2.47 16 24 C -0.33 -8.54 8.95 -38.44 -0.34 -8.89 16 25 H 0.28 6.70 8.29 -40.82 -0.34 6.37 16 26 H 0.12 3.34 6.20 -52.49 -0.33 3.02 16 27 H 0.12 2.57 8.06 -52.48 -0.42 2.15 16 28 H 0.39 6.31 8.72 -40.82 -0.36 5.96 16 29 H 0.07 0.57 7.88 -51.93 -0.41 0.16 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.51 6.72 -51.93 -0.35 0.16 16 35 H 0.40 3.85 8.91 -40.82 -0.36 3.49 16 36 H 0.11 2.04 7.97 -51.93 -0.41 1.62 16 37 H 0.08 0.99 6.79 -51.93 -0.35 0.63 16 38 H 0.10 2.52 6.17 -52.48 -0.32 2.20 16 LS Contribution 310.04 15.07 4.67 4.67 Total: -1.00 -33.28 310.04 -9.00 -42.28 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -4.87 Total: 13.61 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -3.75 Total: -5.99 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.13 Total: -57.58 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.10 Total: -11.29 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.28 -9.00 -42.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162452823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.229 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds