Wall clock time and date at job start Mon Mar 30 2020 02:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86803 * 120.00048 * 2 1 4 4 H 1.48501 * 109.47134 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46889 * 299.99883 * 3 2 1 6 6 H 1.48496 * 109.47207 * 59.99948 * 3 2 1 7 7 C 1.40034 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99914 * 163.14770 * 7 2 1 9 9 C 1.41549 * 120.00060 * 343.13949 * 7 2 1 10 10 C 1.41195 * 120.99291 * 336.12611 * 9 7 2 11 11 C 1.36548 * 119.14522 * 179.97438 * 10 9 7 12 12 N 1.32101 * 121.27049 * 359.97438 * 11 10 9 13 13 C 1.32521 * 122.21503 * 0.02562 * 12 11 10 14 14 N 1.39082 * 119.65736 * 179.97438 * 13 12 11 15 15 C 1.46504 * 120.00075 * 180.02562 * 14 13 12 16 16 H 1.08995 * 109.21929 * 34.39130 * 15 14 13 17 17 C 1.51807 * 109.22431 * 153.79477 * 15 14 13 18 18 C 1.51778 * 113.79852 * 187.18205 * 17 15 14 19 19 C 1.52984 * 110.84611 * 292.91970 * 18 17 15 20 20 N 1.47198 * 108.66641 * 86.49416 * 19 18 17 21 21 C 1.33374 * 120.42131 * 288.04150 * 20 19 18 22 22 O 1.21276 * 119.88849 * 180.26295 * 21 20 19 23 23 C 1.51424 * 120.21960 * 0.28444 * 21 20 19 24 24 C 1.38749 * 120.68776 * 0.25418 * 13 12 11 25 25 H 0.96996 * 120.00131 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.42663 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.36549 * 180.02562 * 11 10 9 28 28 H 0.96999 * 120.00132 * 359.97438 * 14 13 12 29 29 H 1.08990 * 108.66234 * 66.03690 * 17 15 14 30 30 H 1.08994 * 108.57574 * 308.26549 * 17 15 14 31 31 H 1.09003 * 109.19551 * 172.58004 * 18 17 15 32 32 H 1.09006 * 109.19624 * 53.25979 * 18 17 15 33 33 H 1.09001 * 109.60331 * 206.24623 * 19 18 17 34 34 H 1.08997 * 109.60536 * 326.56931 * 19 18 17 35 35 H 0.96989 * 119.78475 * 108.02479 * 20 19 18 36 36 H 1.08996 * 109.62933 * 190.93440 * 23 21 20 37 37 H 1.09001 * 109.63252 * 311.32753 * 23 21 20 38 38 H 1.08005 * 120.66771 * 179.74274 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.7015 1.3464 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8827 2.3965 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0528 -1.2327 -0.2717 9 6 1.3455 -2.4124 0.3545 10 6 0.1906 -2.3926 1.1664 11 6 -0.4185 -3.5723 1.4854 12 7 0.0520 -4.7269 1.0488 13 6 1.1316 -4.8062 0.2842 14 7 1.5810 -6.0504 -0.1451 15 6 2.7739 -6.1468 -0.9901 16 1 3.4812 -5.3690 -0.7024 17 6 3.4184 -7.5068 -0.7917 18 6 4.7592 -7.6565 -1.4871 19 6 4.5894 -7.6353 -3.0073 20 7 4.6084 -6.2361 -3.4640 21 6 3.5749 -5.4304 -3.2152 22 8 3.5987 -4.2806 -3.6001 23 6 2.3723 -5.9465 -2.4535 24 6 1.8216 -3.6613 -0.0876 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2065 -1.4562 1.5298 27 1 -1.3024 -3.5613 2.1059 28 1 1.1050 -6.8544 0.1154 29 1 2.7419 -8.2721 -1.1720 30 1 3.5600 -7.6715 0.2764 31 1 5.2132 -8.6020 -1.1903 32 1 5.4117 -6.8362 -1.1878 33 1 5.4076 -8.1835 -3.4743 34 1 3.6395 -8.0974 -3.2757 35 1 5.3774 -5.8978 -3.9486 36 1 1.5612 -5.2211 -2.5147 37 1 2.0479 -6.8955 -2.8805 38 1 2.7037 -3.7266 -0.7073 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162452823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:53 Heat of formation + Delta-G solvation = -35.718047 kcal Electronic energy + Delta-G solvation = -21304.191291 eV Core-core repulsion = 18144.628329 eV Total energy + Delta-G solvation = -3159.562963 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39694 -40.23277 -38.20167 -36.61546 -35.78119 -33.38540 -32.58724 -31.62353 -29.51492 -27.87901 -27.31398 -24.81264 -23.41213 -22.58028 -21.48180 -20.72773 -19.52932 -18.28733 -17.90621 -17.77501 -16.96781 -16.59452 -16.15677 -15.89020 -15.33743 -15.23029 -14.89892 -14.60575 -14.59571 -14.26966 -14.03847 -13.69963 -13.52538 -13.21206 -12.95773 -12.83418 -12.59481 -12.12709 -12.00363 -11.88753 -11.75097 -11.69722 -11.30001 -10.97389 -10.66525 -10.09065 -9.94970 -9.87415 -8.73471 -8.28038 -6.57568 0.94392 1.14698 1.33995 1.49770 1.53949 1.59923 2.17127 2.30502 2.51919 2.76719 3.64032 3.70396 3.75700 3.89970 4.02349 4.17928 4.24182 4.35339 4.51312 4.62687 4.74491 4.80350 4.88745 4.94936 5.03682 5.04911 5.13623 5.16332 5.22888 5.29225 5.40255 5.59972 5.87777 5.95760 6.10790 6.24697 6.35347 6.53312 6.85119 6.88375 7.05224 7.25524 7.84967 8.24617 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018991 B = 0.005520 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.063679 B = 5071.615732 C = 6146.510822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.039 3.961 3 Si 0.986 3.014 4 H -0.263 1.263 5 H -0.263 1.263 6 H -0.253 1.253 7 C -0.491 4.491 8 H 0.067 0.933 9 C 0.126 3.874 10 C -0.268 4.268 11 C 0.117 3.883 12 N -0.626 5.626 13 C 0.400 3.600 14 N -0.721 5.721 15 C 0.177 3.823 16 H 0.045 0.955 17 C -0.122 4.122 18 C -0.133 4.133 19 C 0.101 3.899 20 N -0.712 5.712 21 C 0.514 3.486 22 O -0.606 6.606 23 C -0.147 4.147 24 C -0.352 4.352 25 H 0.293 0.707 26 H 0.113 0.887 27 H 0.149 0.851 28 H 0.404 0.596 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.054 0.946 33 H 0.126 0.874 34 H 0.093 0.907 35 H 0.405 0.595 36 H 0.058 0.942 37 H 0.127 0.873 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.811 -16.123 -3.979 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.178 4.178 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.177 1.177 7 C -0.522 4.522 8 H 0.085 0.915 9 C 0.118 3.882 10 C -0.293 4.293 11 C -0.033 4.033 12 N -0.350 5.350 13 C 0.168 3.832 14 N -0.357 5.357 15 C 0.070 3.930 16 H 0.063 0.937 17 C -0.160 4.160 18 C -0.171 4.171 19 C -0.021 4.021 20 N -0.364 5.364 21 C 0.301 3.699 22 O -0.488 6.488 23 C -0.188 4.188 24 C -0.379 4.379 25 H 0.104 0.896 26 H 0.130 0.870 27 H 0.166 0.834 28 H 0.240 0.760 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.136 0.864 32 H 0.073 0.927 33 H 0.144 0.856 34 H 0.111 0.889 35 H 0.241 0.759 36 H 0.077 0.923 37 H 0.145 0.855 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.144 -16.221 -3.918 18.569 hybrid contribution 0.566 1.931 -0.393 2.050 sum 8.710 -14.290 -4.311 17.281 Atomic orbital electron populations 1.69836 1.09023 1.30945 1.33797 1.26838 0.95604 1.04613 0.90722 0.85122 0.79146 0.75735 0.79456 1.18632 1.18755 1.17731 1.19825 0.97734 0.92452 1.42144 0.91491 1.18018 0.90749 0.92681 0.86793 1.21734 1.02188 0.98552 1.06805 1.21790 0.97681 0.87388 0.96394 1.66922 1.16784 1.29453 1.21888 1.18129 0.89346 0.86009 0.89756 1.44142 1.31063 1.04125 1.56390 1.20372 0.86201 0.99765 0.86699 0.93716 1.21417 0.98106 0.93664 1.02770 1.21799 0.95840 1.04466 0.95041 1.22203 1.05776 0.79819 0.94330 1.45988 1.19277 1.13550 1.57554 1.20735 0.85629 0.84924 0.78633 1.90773 1.82213 1.21012 1.54794 1.22486 0.95472 1.03989 0.96895 1.21182 1.07714 0.92920 1.16038 0.89645 0.86958 0.83366 0.75974 0.88422 0.90695 0.86438 0.92695 0.85618 0.88871 0.75887 0.92335 0.85522 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.23 10.92 21.84 0.24 -43.99 16 2 C 0.04 2.11 5.20 85.29 0.44 2.55 16 3 Si 0.99 40.52 29.59 68.60 2.03 42.55 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 5 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 6 H -0.25 -9.63 7.11 99.48 0.71 -8.93 16 7 C -0.49 -29.03 9.12 23.52 0.21 -28.81 16 8 H 0.07 3.96 7.90 -2.91 -0.02 3.93 16 9 C 0.13 7.46 5.60 -21.12 -0.12 7.34 16 10 C -0.27 -15.06 8.74 22.60 0.20 -14.87 16 11 C 0.12 5.91 11.10 84.26 0.94 6.85 16 12 N -0.63 -31.02 10.37 -194.48 -2.02 -33.04 16 13 C 0.40 19.32 7.54 132.91 1.00 20.32 16 14 N -0.72 -25.72 5.19 -326.48 -1.69 -27.41 16 15 C 0.18 5.21 1.96 44.62 0.09 5.30 16 16 H 0.04 1.66 6.11 -2.39 -0.01 1.65 16 17 C -0.12 -2.04 4.72 29.80 0.14 -1.90 16 18 C -0.13 -1.53 5.74 30.19 0.17 -1.35 16 19 C 0.10 0.98 6.46 86.24 0.56 1.54 16 20 N -0.71 -14.27 5.27 -462.60 -2.44 -16.71 16 21 C 0.51 16.63 7.06 88.11 0.62 17.25 16 22 O -0.61 -27.55 17.92 -3.02 -0.05 -27.60 16 23 C -0.15 -4.43 5.07 30.10 0.15 -4.28 16 24 C -0.35 -19.36 8.95 23.01 0.21 -19.16 16 25 H 0.29 14.16 8.29 -92.71 -0.77 13.39 16 26 H 0.11 6.42 6.20 -2.91 -0.02 6.40 16 27 H 0.15 6.40 8.06 -2.91 -0.02 6.38 16 28 H 0.40 12.28 8.72 -92.71 -0.81 11.47 16 29 H 0.10 1.12 7.88 -2.39 -0.02 1.10 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.89 8.05 -2.38 -0.02 0.87 16 33 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.09 0.70 6.72 -2.39 -0.02 0.69 16 35 H 0.40 7.29 8.91 -92.72 -0.83 6.46 16 36 H 0.06 2.36 7.97 -2.39 -0.02 2.34 16 37 H 0.13 2.64 6.79 -2.39 -0.02 2.62 16 38 H 0.09 4.90 6.17 -2.91 -0.02 4.88 16 Total: -1.00 -79.83 310.04 0.15 -79.68 By element: Atomic # 1 Polarization: 36.27 SS G_CDS: -0.53 Total: 35.74 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 4.61 Total: -9.22 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -5.91 Total: -121.15 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.05 Total: -27.60 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -79.83 0.15 -79.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162452823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.963 kcal (2) G-P(sol) polarization free energy of solvation -79.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds