Wall clock time and date at job start Mon Mar 30 2020 01:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86805 * 119.99672 * 2 1 4 4 H 1.48494 * 109.47039 * 240.00080 * 3 2 1 5 5 H 1.48500 * 109.47221 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46997 * 119.99976 * 3 2 1 7 7 C 1.39947 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99701 * 163.60339 * 7 2 1 9 9 C 1.41011 * 120.00067 * 343.59482 * 7 2 1 10 10 C 1.41003 * 120.70748 * 334.89524 * 9 7 2 11 11 C 1.38011 * 118.28317 * 180.18845 * 10 9 7 12 12 C 1.38684 * 119.62509 * 359.53347 * 11 10 9 13 13 N 1.31967 * 121.44879 * 0.25313 * 12 11 10 14 14 C 1.32267 * 121.86472 * 359.97438 * 13 12 11 15 15 N 1.38091 * 119.90515 * 180.02562 * 14 13 12 16 16 C 1.46499 * 119.99924 * 0.02562 * 15 14 13 17 17 H 1.08994 * 110.68654 * 31.71659 * 16 15 14 18 18 C 1.55096 * 110.76931 * 268.23448 * 16 15 14 19 19 N 1.48110 * 102.82488 * 281.11781 * 18 16 15 20 20 C 1.47997 * 105.95143 * 319.38255 * 19 18 16 21 21 H 1.08997 * 112.24824 * 262.06879 * 20 19 18 22 22 C 1.54478 * 109.07699 * 136.92209 * 20 19 18 23 23 O 1.44391 * 104.81087 * 271.63505 * 22 20 19 24 24 C 1.44378 * 105.25780 * 318.94323 * 23 22 20 25 25 C 1.54313 * 105.00588 * 40.41800 * 24 23 22 26 26 H 1.08996 * 113.15422 * 213.99998 * 25 24 23 27 27 H 0.96999 * 120.00144 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.85974 * 359.97438 * 10 9 7 29 29 H 1.08002 * 120.18798 * 179.80735 * 11 10 9 30 30 H 1.07995 * 119.27403 * 180.22706 * 12 11 10 31 31 H 0.97004 * 120.00083 * 180.02562 * 15 14 13 32 32 H 1.08994 * 110.79059 * 39.78877 * 18 16 15 33 33 H 1.08998 * 110.78960 * 163.25181 * 18 16 15 34 34 H 1.00897 * 110.22282 * 79.54830 * 19 18 16 35 35 H 1.09005 * 110.37798 * 30.47044 * 22 20 19 36 36 H 1.09003 * 110.37122 * 152.69199 * 22 20 19 37 37 H 1.09002 * 110.33167 * 281.53786 * 24 23 22 38 38 H 1.08996 * 110.33115 * 159.30282 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0963 1.6965 -1.2125 5 1 1.2776 2.7465 0.0006 6 1 3.0964 1.6965 1.2125 7 6 2.0085 -1.2120 -0.0005 8 1 3.0555 -1.2308 -0.2646 9 6 1.3465 -2.4085 0.3438 10 6 0.2029 -2.3871 1.1684 11 6 -0.4033 -3.5879 1.4771 12 6 0.1153 -4.7687 0.9671 13 7 1.1839 -4.7736 0.1927 14 6 1.8129 -3.6576 -0.1363 15 7 2.9275 -3.7097 -0.9499 16 6 3.4112 -4.9997 -1.4479 17 1 2.5821 -5.6926 -1.5910 18 6 4.4728 -5.5968 -0.4877 19 7 5.6963 -4.8394 -0.8385 20 6 5.6913 -4.7190 -2.3136 21 1 6.3193 -5.4711 -2.7911 22 6 6.0982 -3.2809 -2.7042 23 8 4.8596 -2.5391 -2.7227 24 6 3.8976 -3.4210 -3.3402 25 6 4.2062 -4.8175 -2.7605 26 1 4.0319 -5.6248 -3.4718 27 1 -0.4850 0.8400 0.0004 28 1 -0.1865 -1.4553 1.5514 29 1 -1.2791 -3.6075 2.1087 30 1 -0.3657 -5.7048 1.2093 31 1 3.3901 -2.8921 -1.1918 32 1 4.1930 -5.4275 0.5520 33 1 4.6166 -6.6595 -0.6826 34 1 5.6809 -3.9301 -0.4015 35 1 6.7790 -2.8642 -1.9619 36 1 6.5622 -3.2725 -3.6905 37 1 4.0261 -3.4234 -4.4226 38 1 2.8837 -3.1180 -3.0789 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163137262.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:59 Heat of formation + Delta-G solvation = 5.625157 kcal Electronic energy + Delta-G solvation = -22135.609695 eV Core-core repulsion = 18977.839508 eV Total energy + Delta-G solvation = -3157.770187 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.61368 -38.30921 -36.12268 -33.94554 -33.75926 -30.57561 -30.39196 -29.46471 -27.86169 -26.11495 -25.31360 -22.79448 -21.95336 -21.25607 -20.44903 -19.26314 -17.23801 -17.05626 -16.63167 -15.59108 -15.42701 -15.27904 -15.03077 -14.46949 -14.11724 -13.82500 -13.37986 -13.00503 -12.71347 -12.39320 -12.06778 -11.90134 -11.44570 -11.43064 -11.33474 -11.21159 -11.18465 -10.95433 -10.91650 -10.70157 -10.50615 -9.76351 -9.57681 -9.30047 -9.20352 -8.38334 -8.07845 -7.89675 -6.79914 -6.50055 -4.22537 2.76284 3.07404 3.10327 3.12200 3.25641 3.94979 3.96538 4.22301 4.47583 4.65125 4.71117 4.92429 4.97284 5.12427 5.29823 5.51045 5.60129 5.72320 5.75779 5.79270 5.83495 5.97468 6.03880 6.14329 6.29511 6.33118 6.45913 6.77739 6.83781 6.86027 6.95386 7.14635 7.19063 7.46408 7.67254 7.81978 8.01730 8.29133 8.56664 8.67868 8.80061 9.01290 9.78078 10.21200 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.008119 C = 0.005814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.660141 B = 3448.069153 C = 4814.561374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.454 4.454 8 H 0.075 0.925 9 C 0.034 3.966 10 C -0.127 4.127 11 C -0.190 4.190 12 C -0.001 4.001 13 N -0.531 5.531 14 C 0.299 3.701 15 N -0.721 5.721 16 C 0.139 3.861 17 H 0.092 0.908 18 C 0.031 3.969 19 N -0.665 5.665 20 C 0.042 3.958 21 H 0.102 0.898 22 C 0.034 3.966 23 O -0.367 6.367 24 C 0.045 3.955 25 C -0.163 4.163 26 H 0.101 0.899 27 H 0.280 0.720 28 H 0.124 0.876 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.411 0.589 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.341 0.659 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.890 -4.929 -5.009 10.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.485 4.485 8 H 0.094 0.906 9 C 0.027 3.973 10 C -0.153 4.153 11 C -0.212 4.212 12 C -0.154 4.154 13 N -0.248 5.248 14 C 0.062 3.938 15 N -0.363 5.363 16 C 0.030 3.970 17 H 0.110 0.890 18 C -0.100 4.100 19 N -0.294 5.294 20 C -0.069 4.069 21 H 0.120 0.880 22 C -0.044 4.044 23 O -0.285 6.285 24 C -0.032 4.032 25 C -0.184 4.184 26 H 0.119 0.881 27 H 0.091 0.909 28 H 0.142 0.858 29 H 0.112 0.888 30 H 0.134 0.866 31 H 0.252 0.748 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.158 0.842 35 H 0.115 0.885 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.425 -6.043 -5.186 11.593 hybrid contribution -0.644 2.282 -0.063 2.372 sum 7.781 -3.761 -5.249 10.111 Atomic orbital electron populations 1.69806 1.07456 1.29140 1.36059 1.25801 0.94686 1.01046 0.92505 0.86402 0.80130 0.80432 0.80032 1.18899 1.20482 1.18943 1.19135 0.97128 0.90894 1.41325 0.90649 1.17916 0.94519 0.91331 0.93514 1.21346 0.98160 0.96715 0.99076 1.21409 1.01299 0.94400 1.04126 1.21338 0.95874 0.96084 1.02147 1.66539 1.10838 1.29749 1.17646 1.18490 0.90680 0.89710 0.94912 1.44041 1.30397 1.06866 1.55016 1.21950 0.96339 0.88241 0.90484 0.88961 1.23551 0.88034 0.97867 1.00584 1.62959 1.39482 1.22050 1.04872 1.23868 0.95253 0.97204 0.90545 0.87993 1.23733 0.88307 0.90876 1.01467 1.89190 1.19423 1.38622 1.81252 1.23471 0.95406 0.88075 0.96239 1.24125 0.96339 0.98968 0.98962 0.88059 0.90940 0.85806 0.88842 0.86600 0.74757 0.90114 0.90503 0.84232 0.88542 0.91970 0.92694 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.47 10.95 55.55 0.61 -19.86 16 2 C 0.08 1.90 5.19 -17.32 -0.09 1.81 16 3 Si 0.91 18.79 29.59 -169.99 -5.03 13.76 16 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.45 -11.66 8.52 -37.89 -0.32 -11.98 16 8 H 0.08 1.88 6.70 -52.49 -0.35 1.53 16 9 C 0.03 0.89 5.59 -106.47 -0.60 0.30 16 10 C -0.13 -3.28 8.79 -38.62 -0.34 -3.62 16 11 C -0.19 -4.47 10.08 -39.50 -0.40 -4.87 16 12 C 0.00 -0.02 11.17 -17.33 -0.19 -0.21 16 13 N -0.53 -12.54 9.15 -11.87 -0.11 -12.65 16 14 C 0.30 7.20 7.52 -155.02 -1.17 6.04 16 15 N -0.72 -14.58 4.07 -51.63 -0.21 -14.79 16 16 C 0.14 2.33 3.30 -66.01 -0.22 2.11 16 17 H 0.09 1.68 7.49 -51.93 -0.39 1.29 16 18 C 0.03 0.48 7.20 -2.05 -0.01 0.47 16 19 N -0.67 -9.48 7.41 -101.70 -0.75 -10.23 16 20 C 0.04 0.52 4.55 -65.06 -0.30 0.23 16 21 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 22 C 0.03 0.42 6.93 37.93 0.26 0.68 16 23 O -0.37 -5.85 10.20 -35.23 -0.36 -6.21 16 24 C 0.05 0.67 6.28 37.84 0.24 0.90 16 25 C -0.16 -2.20 4.13 -87.84 -0.36 -2.57 16 26 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 28 H 0.12 3.30 6.26 -52.48 -0.33 2.97 16 29 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 30 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 31 H 0.41 8.49 4.03 -40.82 -0.16 8.33 16 32 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.34 5.24 8.10 -39.29 -0.32 4.92 16 35 H 0.10 1.14 7.85 -51.93 -0.41 0.73 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.11 1.94 6.72 -51.93 -0.35 1.59 16 LS Contribution 302.34 15.07 4.56 4.56 Total: -1.00 -27.31 302.34 -9.62 -36.92 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -4.83 Total: 19.23 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -3.50 Total: -10.72 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.46 Total: -57.53 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.36 Total: -6.21 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.31 -9.62 -36.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163137262.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.548 kcal (2) G-P(sol) polarization free energy of solvation -27.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds