Wall clock time and date at job start Mon Mar 30 2020 01:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86805 * 119.99672 * 2 1 4 4 H 1.48494 * 109.47039 * 240.00080 * 3 2 1 5 5 H 1.48500 * 109.47221 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46997 * 119.99976 * 3 2 1 7 7 C 1.39947 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99701 * 163.60339 * 7 2 1 9 9 C 1.41011 * 120.00067 * 343.59482 * 7 2 1 10 10 C 1.41003 * 120.70748 * 334.89524 * 9 7 2 11 11 C 1.38011 * 118.28317 * 180.18845 * 10 9 7 12 12 C 1.38684 * 119.62509 * 359.53347 * 11 10 9 13 13 N 1.31967 * 121.44879 * 0.25313 * 12 11 10 14 14 C 1.32267 * 121.86472 * 359.97438 * 13 12 11 15 15 N 1.38091 * 119.90515 * 180.02562 * 14 13 12 16 16 C 1.46499 * 119.99924 * 0.02562 * 15 14 13 17 17 H 1.08994 * 110.68654 * 31.71659 * 16 15 14 18 18 C 1.55096 * 110.76931 * 268.23448 * 16 15 14 19 19 N 1.48110 * 102.82488 * 281.11781 * 18 16 15 20 20 C 1.47997 * 105.95143 * 319.38255 * 19 18 16 21 21 H 1.08997 * 112.24824 * 262.06879 * 20 19 18 22 22 C 1.54478 * 109.07699 * 136.92209 * 20 19 18 23 23 O 1.44391 * 104.81087 * 271.63505 * 22 20 19 24 24 C 1.44378 * 105.25780 * 318.94323 * 23 22 20 25 25 C 1.54313 * 105.00588 * 40.41800 * 24 23 22 26 26 H 1.08996 * 113.15422 * 213.99998 * 25 24 23 27 27 H 0.96999 * 120.00144 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.85974 * 359.97438 * 10 9 7 29 29 H 1.08002 * 120.18798 * 179.80735 * 11 10 9 30 30 H 1.07995 * 119.27403 * 180.22706 * 12 11 10 31 31 H 0.97004 * 120.00083 * 180.02562 * 15 14 13 32 32 H 1.08994 * 110.79059 * 39.78877 * 18 16 15 33 33 H 1.08998 * 110.78960 * 163.25181 * 18 16 15 34 34 H 1.00897 * 110.22282 * 79.54830 * 19 18 16 35 35 H 1.09005 * 110.37798 * 30.47044 * 22 20 19 36 36 H 1.09003 * 110.37122 * 152.69199 * 22 20 19 37 37 H 1.09002 * 110.33167 * 281.53786 * 24 23 22 38 38 H 1.08996 * 110.33115 * 159.30282 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0963 1.6965 -1.2125 5 1 1.2776 2.7465 0.0006 6 1 3.0964 1.6965 1.2125 7 6 2.0085 -1.2120 -0.0005 8 1 3.0555 -1.2308 -0.2646 9 6 1.3465 -2.4085 0.3438 10 6 0.2029 -2.3871 1.1684 11 6 -0.4033 -3.5879 1.4771 12 6 0.1153 -4.7687 0.9671 13 7 1.1839 -4.7736 0.1927 14 6 1.8129 -3.6576 -0.1363 15 7 2.9275 -3.7097 -0.9499 16 6 3.4112 -4.9997 -1.4479 17 1 2.5821 -5.6926 -1.5910 18 6 4.4728 -5.5968 -0.4877 19 7 5.6963 -4.8394 -0.8385 20 6 5.6913 -4.7190 -2.3136 21 1 6.3193 -5.4711 -2.7911 22 6 6.0982 -3.2809 -2.7042 23 8 4.8596 -2.5391 -2.7227 24 6 3.8976 -3.4210 -3.3402 25 6 4.2062 -4.8175 -2.7605 26 1 4.0319 -5.6248 -3.4718 27 1 -0.4850 0.8400 0.0004 28 1 -0.1865 -1.4553 1.5514 29 1 -1.2791 -3.6075 2.1087 30 1 -0.3657 -5.7048 1.2093 31 1 3.3901 -2.8921 -1.1918 32 1 4.1930 -5.4275 0.5520 33 1 4.6166 -6.6595 -0.6826 34 1 5.6809 -3.9301 -0.4015 35 1 6.7790 -2.8642 -1.9619 36 1 6.5622 -3.2725 -3.6905 37 1 4.0261 -3.4234 -4.4226 38 1 2.8837 -3.1180 -3.0789 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163137262.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:58 Heat of formation + Delta-G solvation = -12.575188 kcal Electronic energy + Delta-G solvation = -22136.398921 eV Core-core repulsion = 18977.839508 eV Total energy + Delta-G solvation = -3158.559413 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.81077 -40.09640 -37.37609 -35.82898 -35.27110 -32.29683 -31.92006 -30.72385 -29.38971 -27.38508 -27.17508 -23.92521 -23.64339 -22.96947 -21.79325 -20.58044 -19.15066 -18.62445 -17.86292 -17.01885 -16.87323 -16.55368 -16.39475 -15.96214 -15.60610 -15.39521 -14.89511 -14.60588 -14.38076 -13.93174 -13.62639 -13.27576 -13.16736 -13.11716 -12.69145 -12.64444 -12.44268 -12.28135 -12.20133 -12.13569 -11.88933 -11.61849 -11.14166 -10.84663 -10.68120 -9.98496 -9.81507 -9.60541 -8.65218 -8.27883 -6.15503 0.93038 1.21624 1.37569 1.47454 1.52556 2.20978 2.66968 2.82359 3.10631 3.14672 3.48422 3.79269 3.84348 3.88110 4.06256 4.20259 4.34273 4.42434 4.54928 4.59955 4.64101 4.71202 4.78142 4.85693 4.87557 4.92730 4.96649 5.02057 5.09799 5.23843 5.33760 5.73219 5.80284 5.84682 5.92224 6.10707 6.24016 6.42070 6.77468 6.86068 6.91962 7.16991 7.92911 8.36821 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.008119 C = 0.005814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.660141 B = 3448.069153 C = 4814.561374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.036 3.964 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.476 4.476 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.150 4.150 11 C -0.199 4.199 12 C 0.000 4.000 13 N -0.538 5.538 14 C 0.297 3.703 15 N -0.713 5.713 16 C 0.130 3.870 17 H 0.078 0.922 18 C 0.040 3.960 19 N -0.663 5.663 20 C 0.048 3.952 21 H 0.133 0.867 22 C 0.031 3.969 23 O -0.397 6.397 24 C 0.046 3.954 25 C -0.152 4.152 26 H 0.131 0.869 27 H 0.285 0.715 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.150 0.850 31 H 0.408 0.592 32 H 0.052 0.948 33 H 0.098 0.902 34 H 0.332 0.668 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.515 -5.782 -6.204 12.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.178 4.178 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.187 1.187 7 C -0.507 4.507 8 H 0.091 0.909 9 C -0.007 4.007 10 C -0.177 4.177 11 C -0.222 4.222 12 C -0.153 4.153 13 N -0.256 5.256 14 C 0.059 3.941 15 N -0.355 5.355 16 C 0.022 3.978 17 H 0.096 0.904 18 C -0.092 4.092 19 N -0.290 5.290 20 C -0.062 4.062 21 H 0.150 0.850 22 C -0.045 4.045 23 O -0.316 6.316 24 C -0.031 4.031 25 C -0.172 4.172 26 H 0.149 0.851 27 H 0.096 0.904 28 H 0.126 0.874 29 H 0.136 0.864 30 H 0.167 0.833 31 H 0.249 0.751 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.147 0.853 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.074 -6.926 -6.400 13.799 hybrid contribution -1.157 2.433 0.293 2.710 sum 8.916 -4.493 -6.107 11.704 Atomic orbital electron populations 1.69867 1.08766 1.30227 1.36802 1.26584 0.95401 1.04028 0.91743 0.85364 0.78817 0.76350 0.79908 1.18597 1.19451 1.18721 1.19271 0.97113 0.91742 1.42610 0.90930 1.18264 0.95390 0.92546 0.94531 1.21367 0.99095 0.97089 1.00134 1.21642 1.02101 0.93814 1.04606 1.21937 0.95317 0.97220 1.00823 1.66680 1.11317 1.29313 1.18250 1.18747 0.91369 0.89317 0.94700 1.44113 1.29155 1.08302 1.53907 1.22168 0.96585 0.86284 0.92765 0.90421 1.23425 0.88078 0.99079 0.98591 1.63038 1.38307 1.21381 1.06280 1.24021 0.94754 0.98218 0.89166 0.84964 1.23935 0.87099 0.90275 1.03216 1.89163 1.20949 1.39851 1.81679 1.23408 0.93585 0.88410 0.97728 1.24146 0.96366 0.99188 0.97547 0.85091 0.90412 0.87425 0.86400 0.83320 0.75082 0.92939 0.88402 0.85253 0.88254 0.89141 0.90003 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.81 10.95 21.83 0.24 -43.57 16 2 C 0.04 1.85 5.19 85.25 0.44 2.29 16 3 Si 0.97 39.12 29.59 68.60 2.03 41.15 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 5 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 7 C -0.48 -25.35 8.52 23.36 0.20 -25.15 16 8 H 0.07 3.76 6.70 -2.91 -0.02 3.74 16 9 C 0.00 -0.01 5.59 -21.06 -0.12 -0.13 16 10 C -0.15 -8.06 8.79 22.89 0.20 -7.86 16 11 C -0.20 -9.44 10.08 22.32 0.22 -9.21 16 12 C 0.00 0.01 11.17 84.78 0.95 0.96 16 13 N -0.54 -25.49 9.15 -191.45 -1.75 -27.25 16 14 C 0.30 14.64 7.52 134.05 1.01 15.65 16 15 N -0.71 -29.36 4.07 -317.27 -1.29 -30.65 16 16 C 0.13 4.26 3.30 46.24 0.15 4.41 16 17 H 0.08 2.78 7.49 -2.39 -0.02 2.76 16 18 C 0.04 1.19 7.20 86.79 0.62 1.81 16 19 N -0.66 -17.65 7.41 -475.68 -3.52 -21.17 16 20 C 0.05 1.05 4.55 46.03 0.21 1.26 16 21 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 22 C 0.03 0.69 6.93 72.48 0.50 1.19 16 23 O -0.40 -12.23 10.20 -148.98 -1.52 -13.75 16 24 C 0.05 1.29 6.28 72.43 0.45 1.74 16 25 C -0.15 -3.73 4.13 -9.00 -0.04 -3.77 16 26 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 28 H 0.11 6.01 6.26 -2.91 -0.02 5.99 16 29 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 30 H 0.15 5.66 8.06 -2.91 -0.02 5.64 16 31 H 0.41 17.29 4.03 -92.70 -0.37 16.91 16 32 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.33 9.94 8.10 -89.70 -0.73 9.21 16 35 H 0.10 2.12 7.85 -2.38 -0.02 2.10 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.07 2.62 6.72 -2.39 -0.02 2.60 16 Total: -1.00 -60.80 302.34 -1.01 -61.81 By element: Atomic # 1 Polarization: 50.25 SS G_CDS: 0.00 Total: 50.25 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 4.81 Total: -16.82 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -6.33 Total: -122.63 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -1.52 Total: -13.75 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -60.80 -1.01 -61.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163137262.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.232 kcal (2) G-P(sol) polarization free energy of solvation -60.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds