Wall clock time and date at job start Mon Mar 30 2020 02:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86800 * 119.99921 * 2 1 4 4 H 1.48501 * 109.46963 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47122 * 299.99852 * 3 2 1 6 6 H 1.48502 * 109.47408 * 60.00022 * 3 2 1 7 7 C 1.40022 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99705 * 180.02562 * 7 2 1 9 9 C 1.41318 * 120.00168 * 359.97438 * 7 2 1 10 10 C 1.40589 * 119.78387 * 179.97438 * 9 7 2 11 11 C 1.38349 * 119.14585 * 179.97438 * 10 9 7 12 12 C 1.38632 * 118.68018 * 0.02562 * 11 10 9 13 13 C 1.39752 * 119.49290 * 0.02562 * 12 11 10 14 14 N 1.38826 * 119.58414 * 179.97438 * 13 12 11 15 15 C 1.46505 * 120.00011 * 0.02587 * 14 13 12 16 16 H 1.08997 * 110.67094 * 324.16055 * 15 14 13 17 17 C 1.55073 * 110.75666 * 200.92749 * 15 14 13 18 18 N 1.48692 * 102.56100 * 202.07373 * 17 15 14 19 19 C 1.47907 * 105.55324 * 41.55867 * 18 17 15 20 20 H 1.09004 * 111.97841 * 209.12942 * 19 18 17 21 21 C 1.54390 * 108.92145 * 84.65892 * 19 18 17 22 22 O 1.44390 * 104.88393 * 222.44803 * 21 19 18 23 23 C 1.44382 * 105.25703 * 40.79890 * 22 21 19 24 24 C 1.54413 * 104.93894 * 319.31921 * 23 22 21 25 25 H 1.08993 * 113.31533 * 261.01405 * 24 23 22 26 26 N 1.31976 * 120.83459 * 0.02562 * 13 12 11 27 27 H 0.97009 * 120.00049 * 0.02562 * 1 2 3 28 28 H 1.08004 * 120.42344 * 359.70887 * 10 9 7 29 29 H 1.08003 * 120.65519 * 179.97438 * 11 10 9 30 30 H 1.07998 * 120.25261 * 179.97438 * 12 11 10 31 31 H 0.97006 * 120.00007 * 180.02562 * 14 13 12 32 32 H 1.09007 * 110.79227 * 320.33980 * 17 15 14 33 33 H 1.08998 * 110.79118 * 83.61018 * 17 15 14 34 34 H 1.00904 * 110.99697 * 281.21007 * 18 17 15 35 35 H 1.08999 * 110.35797 * 341.29895 * 21 19 18 36 36 H 1.09000 * 110.35494 * 103.59646 * 21 19 18 37 37 H 1.09003 * 110.34344 * 78.18178 * 23 22 21 38 38 H 1.08998 * 110.35218 * 200.34454 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8827 2.3965 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2126 0.0010 9 6 1.3009 -2.4365 0.0016 10 6 2.0085 -3.6514 0.0016 11 6 1.3034 -4.8417 0.0033 12 6 -0.0821 -4.7944 0.0043 13 6 -0.7281 -3.5551 0.0031 14 7 -2.1155 -3.5055 0.0036 15 6 -2.8929 -4.7473 0.0059 16 1 -2.3966 -5.5130 -0.5902 17 6 -4.3328 -4.4952 -0.5118 18 7 -5.0879 -5.6404 0.0620 19 6 -4.5840 -5.7952 1.4439 20 1 -4.6472 -6.8275 1.7880 21 6 -5.3541 -4.8282 2.3689 22 8 -4.3471 -4.2636 3.2361 23 6 -3.2088 -4.0133 2.3840 24 6 -3.1319 -5.2415 1.4513 25 1 -2.3974 -5.9806 1.7710 26 7 -0.0360 -2.4314 0.0006 27 1 -0.4851 0.8401 -0.0004 28 1 3.0885 -3.6553 -0.0039 29 1 1.8222 -5.7890 0.0029 30 1 -0.6578 -5.7081 0.0051 31 1 -2.5702 -2.6486 0.0024 32 1 -4.7196 -3.5486 -0.1342 33 1 -4.3614 -4.5160 -1.6013 34 1 -4.9340 -6.4805 -0.4753 35 1 -5.8329 -4.0437 1.7829 36 1 -6.0959 -5.3726 2.9532 37 1 -3.3636 -3.1046 1.8021 38 1 -2.2999 -3.9305 2.9800 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163141418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:23 Heat of formation + Delta-G solvation = 13.977955 kcal Electronic energy + Delta-G solvation = -21560.633608 eV Core-core repulsion = 18403.225626 eV Total energy + Delta-G solvation = -3157.407982 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60540 -38.19506 -36.39958 -34.49277 -33.20293 -30.65657 -29.95637 -29.44980 -28.07763 -26.17786 -25.44435 -23.63478 -21.60570 -21.18777 -20.46188 -19.36435 -17.43100 -17.36177 -16.48585 -15.83363 -15.37261 -15.17998 -14.72388 -14.57508 -14.41802 -13.64455 -13.36074 -13.17977 -12.74014 -12.60822 -12.33935 -12.05738 -11.90599 -11.48611 -11.33753 -11.08301 -10.99748 -10.85804 -10.73599 -10.61326 -10.44907 -9.93814 -9.71728 -9.51561 -8.98546 -8.79499 -7.97093 -7.56706 -6.61054 -6.37394 -4.51587 2.82548 3.10006 3.14134 3.17671 3.25052 3.72946 3.95879 4.08943 4.25000 4.70626 4.73881 4.86623 4.88970 5.07949 5.20688 5.24861 5.31984 5.59409 5.69836 5.80404 5.87092 5.95238 6.04925 6.10055 6.16880 6.20691 6.36375 6.53145 6.78615 6.84374 6.88510 6.95496 7.14526 7.20384 7.53203 7.74655 7.85937 8.10884 8.29472 8.58623 8.75357 9.05869 10.18982 10.35304 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023728 B = 0.005032 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.736097 B = 5563.459328 C = 6095.937784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.433 4.433 8 H 0.084 0.916 9 C 0.292 3.708 10 C -0.315 4.315 11 C -0.032 4.032 12 C -0.367 4.367 13 C 0.411 3.589 14 N -0.726 5.726 15 C 0.140 3.860 16 H 0.085 0.915 17 C 0.034 3.966 18 N -0.660 5.660 19 C 0.040 3.960 20 H 0.095 0.905 21 C 0.057 3.943 22 O -0.383 6.383 23 C 0.065 3.935 24 C -0.167 4.167 25 H 0.094 0.906 26 N -0.530 5.530 27 H 0.269 0.731 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.397 0.603 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.341 0.659 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.835 -7.425 0.440 11.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.154 4.154 3 Si 0.729 3.271 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.465 4.465 8 H 0.102 0.898 9 C 0.165 3.835 10 C -0.338 4.338 11 C -0.056 4.056 12 C -0.393 4.393 13 C 0.171 3.829 14 N -0.362 5.362 15 C 0.030 3.970 16 H 0.103 0.897 17 C -0.096 4.096 18 N -0.288 5.288 19 C -0.071 4.071 20 H 0.113 0.887 21 C -0.021 4.021 22 O -0.301 6.301 23 C -0.012 4.012 24 C -0.189 4.189 25 H 0.113 0.887 26 N -0.251 5.251 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.233 0.767 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.157 0.843 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.105 -6.259 0.809 11.914 hybrid contribution 1.699 -0.324 -0.358 1.766 sum -8.406 -6.583 0.451 10.686 Atomic orbital electron populations 1.70150 1.07148 1.27310 1.29018 1.26048 0.94874 1.00948 0.93524 0.86320 0.80921 0.81371 0.78476 1.18436 1.19929 1.19902 1.19632 0.94220 0.89382 1.43217 0.89835 1.18201 0.86868 0.91853 0.86585 1.21547 0.98459 0.93468 1.20294 1.20591 0.93453 0.96366 0.95232 1.20573 0.94543 0.95366 1.28844 1.18489 0.84126 0.90275 0.89972 1.44052 1.02756 1.05951 1.83436 1.22248 0.92060 0.88809 0.93878 0.89748 1.23454 0.90430 0.95757 0.99977 1.62818 1.55188 1.08178 1.02584 1.23732 0.92439 1.00195 0.90713 0.88670 1.23331 0.91337 0.95539 0.91871 1.89107 1.25194 1.83204 1.32606 1.23298 0.89217 0.96614 0.92034 1.24194 0.97386 0.98913 0.98384 0.88739 1.68206 1.07696 1.24261 1.24899 0.91950 0.88703 0.89013 0.89411 0.76708 0.89675 0.89669 0.84335 0.91655 0.89402 0.91313 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.68 11.46 55.55 0.64 -18.04 16 2 C 0.07 1.80 5.50 -17.35 -0.10 1.71 16 3 Si 0.90 18.58 29.56 -169.99 -5.02 13.56 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.43 -11.59 9.14 -37.74 -0.34 -11.94 16 8 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 9 C 0.29 7.99 6.55 -85.00 -0.56 7.43 16 10 C -0.31 -7.86 9.83 -38.65 -0.38 -8.24 16 11 C -0.03 -0.73 10.15 -39.40 -0.40 -1.13 16 12 C -0.37 -8.16 9.26 -38.87 -0.36 -8.52 16 13 C 0.41 9.56 7.65 -155.32 -1.19 8.37 16 14 N -0.73 -13.48 3.88 -52.03 -0.20 -13.68 16 15 C 0.14 2.02 2.68 -65.98 -0.18 1.85 16 16 H 0.08 1.26 6.56 -51.93 -0.34 0.92 16 17 C 0.03 0.40 6.73 -1.73 -0.01 0.39 16 18 N -0.66 -6.93 7.05 -101.38 -0.71 -7.65 16 19 C 0.04 0.46 4.52 -65.15 -0.29 0.17 16 20 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 21 C 0.06 0.71 7.15 37.89 0.27 0.98 16 22 O -0.38 -6.03 11.65 -35.23 -0.41 -6.44 16 23 C 0.07 1.04 6.49 37.90 0.25 1.29 16 24 C -0.17 -2.33 4.16 -87.75 -0.37 -2.69 16 25 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 26 N -0.53 -14.20 7.89 -10.33 -0.08 -14.28 16 27 H 0.27 6.39 8.29 -40.82 -0.34 6.06 16 28 H 0.09 2.21 8.06 -52.48 -0.42 1.79 16 29 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 30 H 0.09 1.73 6.24 -52.49 -0.33 1.40 16 31 H 0.40 7.49 8.01 -40.82 -0.33 7.17 16 32 H 0.08 1.07 7.67 -51.92 -0.40 0.67 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.34 3.00 8.92 -39.29 -0.35 2.65 16 35 H 0.07 0.83 7.44 -51.93 -0.39 0.44 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.16 6.31 -51.93 -0.33 0.83 16 38 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 LS Contribution 306.72 15.07 4.62 4.62 Total: -1.00 -28.95 306.72 -9.79 -38.75 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -4.96 Total: 13.49 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -3.66 Total: -10.32 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.36 Total: -53.65 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.41 Total: -6.44 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.95 -9.79 -38.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163141418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.724 kcal (2) G-P(sol) polarization free energy of solvation -28.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds