Wall clock time and date at job start Mon Mar 30 2020 02:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86800 * 119.99921 * 2 1 4 4 H 1.48501 * 109.46963 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47122 * 299.99852 * 3 2 1 6 6 H 1.48502 * 109.47408 * 60.00022 * 3 2 1 7 7 C 1.40022 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99705 * 180.02562 * 7 2 1 9 9 C 1.41318 * 120.00168 * 359.97438 * 7 2 1 10 10 C 1.40589 * 119.78387 * 179.97438 * 9 7 2 11 11 C 1.38349 * 119.14585 * 179.97438 * 10 9 7 12 12 C 1.38632 * 118.68018 * 0.02562 * 11 10 9 13 13 C 1.39752 * 119.49290 * 0.02562 * 12 11 10 14 14 N 1.38826 * 119.58414 * 179.97438 * 13 12 11 15 15 C 1.46505 * 120.00011 * 0.02587 * 14 13 12 16 16 H 1.08997 * 110.67094 * 324.16055 * 15 14 13 17 17 C 1.55073 * 110.75666 * 200.92749 * 15 14 13 18 18 N 1.48692 * 102.56100 * 202.07373 * 17 15 14 19 19 C 1.47907 * 105.55324 * 41.55867 * 18 17 15 20 20 H 1.09004 * 111.97841 * 209.12942 * 19 18 17 21 21 C 1.54390 * 108.92145 * 84.65892 * 19 18 17 22 22 O 1.44390 * 104.88393 * 222.44803 * 21 19 18 23 23 C 1.44382 * 105.25703 * 40.79890 * 22 21 19 24 24 C 1.54413 * 104.93894 * 319.31921 * 23 22 21 25 25 H 1.08993 * 113.31533 * 261.01405 * 24 23 22 26 26 N 1.31976 * 120.83459 * 0.02562 * 13 12 11 27 27 H 0.97009 * 120.00049 * 0.02562 * 1 2 3 28 28 H 1.08004 * 120.42344 * 359.70887 * 10 9 7 29 29 H 1.08003 * 120.65519 * 179.97438 * 11 10 9 30 30 H 1.07998 * 120.25261 * 179.97438 * 12 11 10 31 31 H 0.97006 * 120.00007 * 180.02562 * 14 13 12 32 32 H 1.09007 * 110.79227 * 320.33980 * 17 15 14 33 33 H 1.08998 * 110.79118 * 83.61018 * 17 15 14 34 34 H 1.00904 * 110.99697 * 281.21007 * 18 17 15 35 35 H 1.08999 * 110.35797 * 341.29895 * 21 19 18 36 36 H 1.09000 * 110.35494 * 103.59646 * 21 19 18 37 37 H 1.09003 * 110.34344 * 78.18178 * 23 22 21 38 38 H 1.08998 * 110.35218 * 200.34454 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8827 2.3965 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2126 0.0010 9 6 1.3009 -2.4365 0.0016 10 6 2.0085 -3.6514 0.0016 11 6 1.3034 -4.8417 0.0033 12 6 -0.0821 -4.7944 0.0043 13 6 -0.7281 -3.5551 0.0031 14 7 -2.1155 -3.5055 0.0036 15 6 -2.8929 -4.7473 0.0059 16 1 -2.3966 -5.5130 -0.5902 17 6 -4.3328 -4.4952 -0.5118 18 7 -5.0879 -5.6404 0.0620 19 6 -4.5840 -5.7952 1.4439 20 1 -4.6472 -6.8275 1.7880 21 6 -5.3541 -4.8282 2.3689 22 8 -4.3471 -4.2636 3.2361 23 6 -3.2088 -4.0133 2.3840 24 6 -3.1319 -5.2415 1.4513 25 1 -2.3974 -5.9806 1.7710 26 7 -0.0360 -2.4314 0.0006 27 1 -0.4851 0.8401 -0.0004 28 1 3.0885 -3.6553 -0.0039 29 1 1.8222 -5.7890 0.0029 30 1 -0.6578 -5.7081 0.0051 31 1 -2.5702 -2.6486 0.0024 32 1 -4.7196 -3.5486 -0.1342 33 1 -4.3614 -4.5160 -1.6013 34 1 -4.9340 -6.4805 -0.4753 35 1 -5.8329 -4.0437 1.7829 36 1 -6.0959 -5.3726 2.9532 37 1 -3.3636 -3.1046 1.8021 38 1 -2.2999 -3.9305 2.9800 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163141418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:22 Heat of formation + Delta-G solvation = -6.193818 kcal Electronic energy + Delta-G solvation = -21561.508322 eV Core-core repulsion = 18403.225626 eV Total energy + Delta-G solvation = -3158.282696 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.75095 -39.96590 -37.63800 -36.02013 -34.93429 -32.39303 -31.52594 -30.64558 -29.48157 -27.48444 -27.19306 -24.82432 -23.34899 -22.80476 -21.64017 -20.66569 -19.19386 -18.53628 -18.00519 -16.99368 -16.82325 -16.66084 -16.16626 -16.14005 -15.79666 -15.28766 -14.78836 -14.60863 -14.15202 -14.01967 -13.78570 -13.56798 -13.07643 -12.94568 -12.74495 -12.59907 -12.52674 -12.33576 -12.16631 -11.97270 -11.79538 -11.71221 -11.29672 -10.89512 -10.63116 -9.87051 -9.76046 -9.45318 -8.32979 -8.24385 -6.48773 1.03952 1.33174 1.40996 1.55541 1.55980 2.24013 2.43973 2.88971 2.95090 3.16656 3.64614 3.71234 3.79494 3.94460 4.07878 4.14305 4.18393 4.25513 4.37585 4.44968 4.64828 4.76225 4.82064 4.85416 4.89303 4.92595 4.98359 4.99432 5.04221 5.12915 5.33248 5.42458 5.70115 5.84565 5.94964 6.05542 6.21142 6.36722 6.53456 6.80754 6.90644 7.19127 8.32936 8.49624 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023728 B = 0.005032 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.736097 B = 5563.459328 C = 6095.937784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.027 3.973 3 Si 0.984 3.016 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.471 4.471 8 H 0.084 0.916 9 C 0.260 3.740 10 C -0.344 4.344 11 C -0.031 4.031 12 C -0.364 4.364 13 C 0.399 3.601 14 N -0.718 5.718 15 C 0.137 3.863 16 H 0.088 0.912 17 C 0.044 3.956 18 N -0.649 5.649 19 C 0.053 3.947 20 H 0.121 0.879 21 C 0.051 3.949 22 O -0.401 6.401 23 C 0.068 3.932 24 C -0.163 4.163 25 H 0.092 0.908 26 N -0.563 5.563 27 H 0.276 0.724 28 H 0.100 0.900 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.393 0.607 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.356 0.644 35 H 0.062 0.938 36 H 0.111 0.889 37 H 0.055 0.945 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.056 -8.758 0.064 13.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.194 4.194 3 Si 0.804 3.196 4 H -0.180 1.180 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.503 4.503 8 H 0.103 0.897 9 C 0.133 3.867 10 C -0.367 4.367 11 C -0.055 4.055 12 C -0.389 4.389 13 C 0.159 3.841 14 N -0.352 5.352 15 C 0.028 3.972 16 H 0.106 0.894 17 C -0.086 4.086 18 N -0.278 5.278 19 C -0.058 4.058 20 H 0.139 0.861 21 C -0.026 4.026 22 O -0.320 6.320 23 C -0.009 4.009 24 C -0.185 4.185 25 H 0.110 0.890 26 N -0.286 5.286 27 H 0.086 0.914 28 H 0.118 0.882 29 H 0.145 0.855 30 H 0.135 0.865 31 H 0.229 0.771 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.174 0.826 35 H 0.080 0.920 36 H 0.130 0.870 37 H 0.073 0.927 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.371 -7.648 0.425 13.710 hybrid contribution 1.952 -0.048 -0.213 1.964 sum -9.420 -7.695 0.212 12.165 Atomic orbital electron populations 1.70238 1.08662 1.28584 1.29684 1.26912 0.95744 1.04222 0.92563 0.85140 0.79428 0.76306 0.78687 1.17969 1.19107 1.19289 1.19956 0.94561 0.90563 1.45207 0.89744 1.18651 0.87717 0.93093 0.87270 1.21687 0.98940 0.93864 1.22251 1.20998 0.93872 0.97053 0.93566 1.20914 0.94766 0.96049 1.27209 1.18899 0.85835 0.90130 0.89281 1.44169 1.01309 1.07440 1.82329 1.22518 0.93028 0.87089 0.94536 0.89442 1.23367 0.88421 0.96094 1.00766 1.62772 1.54274 1.08504 1.02226 1.23703 0.89982 1.01081 0.91048 0.86083 1.23566 0.91077 0.95835 0.92137 1.89089 1.25688 1.83637 1.33539 1.23112 0.88600 0.97307 0.91903 1.24138 0.99353 0.97904 0.97123 0.88978 1.68175 1.07900 1.26189 1.26300 0.91375 0.88205 0.85521 0.86486 0.77142 0.90435 0.88251 0.82585 0.91957 0.87048 0.92663 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.41 11.46 21.84 0.25 -40.16 16 2 C 0.03 1.42 5.50 85.29 0.47 1.89 16 3 Si 0.98 38.85 29.56 68.60 2.03 40.88 16 4 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 6 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.47 -26.21 9.14 23.46 0.21 -26.00 16 8 H 0.08 4.45 7.85 -2.91 -0.02 4.43 16 9 C 0.26 14.75 6.55 40.19 0.26 15.02 16 10 C -0.34 -17.56 9.83 22.87 0.22 -17.33 16 11 C -0.03 -1.37 10.15 22.39 0.23 -1.14 16 12 C -0.36 -15.77 9.26 22.73 0.21 -15.56 16 13 C 0.40 18.74 7.65 133.40 1.02 19.76 16 14 N -0.72 -26.66 3.88 -318.51 -1.24 -27.89 16 15 C 0.14 3.72 2.68 46.25 0.12 3.84 16 16 H 0.09 2.37 6.56 -2.39 -0.02 2.36 16 17 C 0.04 0.94 6.73 86.67 0.58 1.52 16 18 N -0.65 -11.34 7.05 -474.65 -3.35 -14.69 16 19 C 0.05 1.04 4.52 46.02 0.21 1.25 16 20 H 0.12 1.86 8.14 -2.38 -0.02 1.85 16 21 C 0.05 1.14 7.15 72.45 0.52 1.66 16 22 O -0.40 -12.33 11.65 -148.98 -1.74 -14.06 16 23 C 0.07 2.19 6.49 72.46 0.47 2.66 16 24 C -0.16 -4.28 4.16 -8.94 -0.04 -4.31 16 25 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 26 N -0.56 -31.20 7.89 -186.60 -1.47 -32.67 16 27 H 0.28 13.43 8.29 -92.70 -0.77 12.66 16 28 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 29 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 30 H 0.12 4.31 6.24 -2.91 -0.02 4.29 16 31 H 0.39 15.17 8.01 -92.70 -0.74 14.43 16 32 H 0.08 1.82 7.67 -2.38 -0.02 1.81 16 33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.36 4.75 8.92 -89.69 -0.80 3.95 16 35 H 0.06 1.45 7.44 -2.39 -0.02 1.43 16 36 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.06 1.91 6.31 -2.39 -0.02 1.89 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -64.79 306.72 -1.46 -66.25 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: -0.44 Total: 39.09 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 4.50 Total: -16.74 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -5.80 Total: -115.41 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -1.74 Total: -14.06 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -64.79 -1.46 -66.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163141418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.056 kcal (2) G-P(sol) polarization free energy of solvation -64.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds