Wall clock time and date at job start Mon Mar 30 2020 02:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86804 * 119.99905 * 2 1 4 4 H 1.48502 * 109.47146 * 275.41697 * 3 2 1 5 5 H 1.48501 * 109.47224 * 35.41452 * 3 2 1 6 6 H 1.48497 * 109.47350 * 155.41944 * 3 2 1 7 7 C 1.39937 * 120.00422 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99506 * 341.69574 * 7 2 1 9 9 C 1.41424 * 120.00015 * 161.68997 * 7 2 1 10 10 C 1.40797 * 120.61929 * 150.41369 * 9 7 2 11 11 N 1.31469 * 120.56646 * 180.02562 * 10 9 7 12 12 C 1.32016 * 122.05252 * 359.97438 * 11 10 9 13 13 C 1.39291 * 121.21506 * 0.02562 * 12 11 10 14 14 N 1.39711 * 120.36764 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00203 * 0.02562 * 14 13 12 16 16 H 1.09000 * 110.16681 * 33.19704 * 15 14 13 17 17 C 1.53799 * 110.19146 * 271.32024 * 15 14 13 18 18 N 1.48974 * 106.99357 * 244.29132 * 17 15 14 19 19 C 1.48141 * 105.98749 * 334.01186 * 18 17 15 20 20 H 1.09003 * 114.18528 * 273.47487 * 19 18 17 21 21 C 1.54260 * 108.53224 * 145.71471 * 19 18 17 22 22 O 1.43282 * 107.82755 * 271.72858 * 21 19 18 23 23 C 1.43631 * 109.85334 * 2.42736 * 22 21 19 24 24 C 1.54025 * 110.19715 * 154.99796 * 15 14 13 25 25 H 1.09001 * 113.68370 * 262.27850 * 24 15 14 26 26 C 1.38699 * 119.27065 * 0.25462 * 13 12 11 27 27 H 0.96999 * 120.00098 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.71944 * 359.97438 * 10 9 7 29 29 H 1.08007 * 119.39210 * 180.02562 * 12 11 10 30 30 H 0.97006 * 120.00626 * 179.97438 * 14 13 12 31 31 H 1.08996 * 109.90185 * 2.92450 * 17 15 14 32 32 H 1.09001 * 109.90252 * 123.98183 * 17 15 14 33 33 H 1.00900 * 110.38541 * 213.74284 * 18 17 15 34 34 H 1.09000 * 109.78989 * 152.13686 * 21 19 18 35 35 H 1.08998 * 109.79084 * 31.31136 * 21 19 18 36 36 H 1.08999 * 110.27290 * 93.79834 * 23 22 21 37 37 H 1.09002 * 110.27535 * 215.88000 * 23 22 21 38 38 H 1.07997 * 120.92884 * 179.72947 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3753 2.1126 -1.3938 5 1 1.5016 2.6170 0.8113 6 1 3.5924 1.4100 0.5824 7 6 2.0080 -1.2118 0.0005 8 1 1.5090 -2.1233 0.2947 9 6 3.3686 -1.2429 -0.3842 10 6 4.2444 -2.2047 0.1546 11 7 5.5091 -2.2323 -0.2035 12 6 6.0103 -1.3736 -1.0719 13 6 5.2156 -0.3889 -1.6542 14 7 5.7647 0.5112 -2.5709 15 6 7.1835 0.4223 -2.9249 16 1 7.5112 -0.6171 -2.9056 17 6 8.0269 1.2647 -1.9532 18 7 8.6502 2.3569 -2.7519 19 6 8.7444 1.8453 -4.1390 20 1 9.6476 1.2700 -4.3423 21 6 8.5325 3.0237 -5.1116 22 8 7.1259 3.1417 -5.3579 23 6 6.4110 2.1703 -4.5780 24 6 7.4225 1.0293 -4.3202 25 1 7.4628 0.2886 -5.1189 26 6 3.8745 -0.3081 -1.3097 27 1 -0.4850 0.8400 0.0004 28 1 3.8743 -2.9255 0.8687 29 1 7.0558 -1.4356 -1.3356 30 1 5.2063 1.1947 -2.9736 31 1 7.3859 1.6989 -1.1860 32 1 8.7911 0.6415 -1.4888 33 1 9.5635 2.5821 -2.3868 34 1 9.0560 2.8285 -6.0475 35 1 8.9071 3.9440 -4.6636 36 1 6.0868 2.6084 -3.6340 37 1 5.5528 1.7955 -5.1359 38 1 3.2350 0.4474 -1.7415 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163145580.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:26 Heat of formation + Delta-G solvation = 3.164905 kcal Electronic energy + Delta-G solvation = -21446.434948 eV Core-core repulsion = 18288.558077 eV Total energy + Delta-G solvation = -3157.876871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70546 -38.66151 -36.64745 -34.63486 -33.86840 -31.30846 -30.79576 -29.75701 -27.90608 -26.80612 -25.41121 -23.12375 -22.37859 -21.51385 -20.60520 -19.80640 -17.87352 -17.38765 -16.78181 -16.17340 -15.38232 -15.25117 -15.08430 -14.82038 -14.53550 -14.19870 -13.97114 -13.33475 -12.98170 -12.88744 -12.71541 -12.23095 -12.09878 -11.85133 -11.78054 -11.64280 -11.32099 -11.06128 -10.88312 -10.80878 -10.36790 -10.03374 -9.81005 -9.59016 -9.45713 -8.84201 -8.16128 -8.05609 -7.05957 -6.76017 -4.62053 2.53413 2.73891 3.04587 3.16471 3.27452 3.59358 3.70436 3.90978 3.97087 4.18110 4.49352 4.59535 4.73733 4.90044 4.96968 5.07261 5.11769 5.32623 5.45559 5.51803 5.54568 5.59965 5.71057 5.87586 5.90819 6.02716 6.17512 6.36763 6.43423 6.47961 6.78478 6.84938 6.94202 7.02509 7.22117 7.55295 7.64999 7.99773 8.09361 8.26654 8.53678 8.66894 9.49817 9.95380 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022623 B = 0.005490 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.385954 B = 5099.157388 C = 5841.108936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.085 3.915 3 Si 0.916 3.084 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.246 1.246 7 C -0.434 4.434 8 H 0.096 0.904 9 C 0.080 3.920 10 C -0.032 4.032 11 N -0.435 5.435 12 C -0.104 4.104 13 C 0.199 3.801 14 N -0.747 5.747 15 C 0.161 3.839 16 H 0.090 0.910 17 C 0.019 3.981 18 N -0.657 5.657 19 C 0.030 3.970 20 H 0.084 0.916 21 C 0.068 3.932 22 O -0.380 6.380 23 C 0.065 3.935 24 C -0.134 4.134 25 H 0.107 0.893 26 C -0.281 4.281 27 H 0.287 0.713 28 H 0.131 0.869 29 H 0.118 0.882 30 H 0.393 0.607 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.337 0.663 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.459 5.744 -7.896 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.135 4.135 3 Si 0.743 3.257 4 H -0.198 1.198 5 H -0.218 1.218 6 H -0.169 1.169 7 C -0.463 4.463 8 H 0.114 0.886 9 C 0.074 3.926 10 C -0.199 4.199 11 N -0.142 5.142 12 C -0.262 4.262 13 C 0.098 3.902 14 N -0.381 5.381 15 C 0.053 3.947 16 H 0.108 0.892 17 C -0.112 4.112 18 N -0.286 5.286 19 C -0.080 4.080 20 H 0.102 0.898 21 C -0.009 4.009 22 O -0.299 6.299 23 C -0.012 4.012 24 C -0.153 4.153 25 H 0.125 0.875 26 C -0.311 4.311 27 H 0.098 0.902 28 H 0.149 0.851 29 H 0.136 0.864 30 H 0.229 0.771 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.153 0.847 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 14.234 5.735 -7.769 17.200 hybrid contribution 0.259 0.860 -0.283 0.942 sum 14.492 6.595 -8.053 17.843 Atomic orbital electron populations 1.69693 1.08138 1.30515 1.33953 1.26193 0.94707 1.01900 0.90693 0.86223 0.81260 0.79508 0.78712 1.19844 1.21788 1.16871 1.19484 0.92893 0.96278 1.37627 0.88610 1.18386 0.93864 0.91103 0.89245 1.22406 0.88530 1.03896 1.05089 1.66871 1.15527 1.21760 1.10059 1.21224 0.98333 0.99849 1.06754 1.18541 0.92822 0.89684 0.89191 1.44695 1.07831 1.36513 1.49069 1.21259 0.83132 0.99275 0.91034 0.89172 1.23567 0.98266 0.92178 0.97167 1.63677 1.26328 1.37482 1.01123 1.24049 0.97685 0.95091 0.91196 0.89791 1.22990 0.82993 0.97934 0.96978 1.88396 1.17415 1.57492 1.66599 1.23221 0.94551 0.87289 0.96101 1.23898 0.95067 0.98063 0.98297 0.87531 1.20774 0.93686 1.08240 1.08381 0.90247 0.85113 0.86438 0.77062 0.89181 0.93020 0.84741 0.91455 0.90888 0.90998 0.89759 0.87598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.76 13.93 55.55 0.77 -19.99 16 2 C 0.09 2.19 5.42 -17.34 -0.09 2.09 16 3 Si 0.92 20.66 24.53 -169.99 -4.17 16.49 16 4 H -0.27 -5.92 6.70 56.52 0.38 -5.55 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.25 -5.78 6.85 56.52 0.39 -5.39 16 7 C -0.43 -11.44 9.60 -37.73 -0.36 -11.80 16 8 H 0.10 2.61 8.06 -52.49 -0.42 2.19 16 9 C 0.08 2.01 5.12 -106.70 -0.55 1.46 16 10 C -0.03 -0.78 10.97 -16.74 -0.18 -0.97 16 11 N -0.44 -10.20 10.33 -12.37 -0.13 -10.33 16 12 C -0.10 -2.22 10.39 -17.08 -0.18 -2.40 16 13 C 0.20 4.17 6.66 -83.71 -0.56 3.61 16 14 N -0.75 -12.42 4.95 -51.19 -0.25 -12.67 16 15 C 0.16 2.12 2.74 -66.98 -0.18 1.93 16 16 H 0.09 1.20 6.44 -51.93 -0.33 0.86 16 17 C 0.02 0.23 7.32 -2.26 -0.02 0.21 16 18 N -0.66 -6.96 6.79 -101.23 -0.69 -7.65 16 19 C 0.03 0.29 4.47 -64.54 -0.29 0.00 16 20 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 21 C 0.07 0.69 7.41 37.82 0.28 0.97 16 22 O -0.38 -5.07 11.36 -35.23 -0.40 -5.47 16 23 C 0.06 0.83 5.64 38.02 0.21 1.04 16 24 C -0.13 -1.50 4.21 -87.39 -0.37 -1.86 16 25 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 26 C -0.28 -6.63 7.15 -38.39 -0.27 -6.91 16 27 H 0.29 6.75 8.30 -40.82 -0.34 6.41 16 28 H 0.13 2.95 8.06 -52.48 -0.42 2.53 16 29 H 0.12 2.19 6.21 -52.48 -0.33 1.86 16 30 H 0.39 6.36 6.12 -40.82 -0.25 6.11 16 31 H 0.09 1.35 7.92 -51.93 -0.41 0.94 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.34 2.85 8.90 -39.29 -0.35 2.50 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 36 H 0.07 1.02 6.67 -51.93 -0.35 0.68 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.11 2.49 4.77 -52.49 -0.25 2.24 16 LS Contribution 299.87 15.07 4.52 4.52 Total: -1.00 -28.48 299.87 -7.72 -36.20 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -4.82 Total: 11.51 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -2.56 Total: -12.61 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.30 Total: -50.63 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.40 Total: -5.47 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.17 Total: 16.49 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.48 -7.72 -36.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163145580.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.368 kcal (2) G-P(sol) polarization free energy of solvation -28.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds