Wall clock time and date at job start Mon Mar 30 2020 02:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86804 * 119.99905 * 2 1 4 4 H 1.48502 * 109.47146 * 275.41697 * 3 2 1 5 5 H 1.48501 * 109.47224 * 35.41452 * 3 2 1 6 6 H 1.48497 * 109.47350 * 155.41944 * 3 2 1 7 7 C 1.39937 * 120.00422 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99506 * 341.69574 * 7 2 1 9 9 C 1.41424 * 120.00015 * 161.68997 * 7 2 1 10 10 C 1.40797 * 120.61929 * 150.41369 * 9 7 2 11 11 N 1.31469 * 120.56646 * 180.02562 * 10 9 7 12 12 C 1.32016 * 122.05252 * 359.97438 * 11 10 9 13 13 C 1.39291 * 121.21506 * 0.02562 * 12 11 10 14 14 N 1.39711 * 120.36764 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00203 * 0.02562 * 14 13 12 16 16 H 1.09000 * 110.16681 * 33.19704 * 15 14 13 17 17 C 1.53799 * 110.19146 * 271.32024 * 15 14 13 18 18 N 1.48974 * 106.99357 * 244.29132 * 17 15 14 19 19 C 1.48141 * 105.98749 * 334.01186 * 18 17 15 20 20 H 1.09003 * 114.18528 * 273.47487 * 19 18 17 21 21 C 1.54260 * 108.53224 * 145.71471 * 19 18 17 22 22 O 1.43282 * 107.82755 * 271.72858 * 21 19 18 23 23 C 1.43631 * 109.85334 * 2.42736 * 22 21 19 24 24 C 1.54025 * 110.19715 * 154.99796 * 15 14 13 25 25 H 1.09001 * 113.68370 * 262.27850 * 24 15 14 26 26 C 1.38699 * 119.27065 * 0.25462 * 13 12 11 27 27 H 0.96999 * 120.00098 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.71944 * 359.97438 * 10 9 7 29 29 H 1.08007 * 119.39210 * 180.02562 * 12 11 10 30 30 H 0.97006 * 120.00626 * 179.97438 * 14 13 12 31 31 H 1.08996 * 109.90185 * 2.92450 * 17 15 14 32 32 H 1.09001 * 109.90252 * 123.98183 * 17 15 14 33 33 H 1.00900 * 110.38541 * 213.74284 * 18 17 15 34 34 H 1.09000 * 109.78989 * 152.13686 * 21 19 18 35 35 H 1.08998 * 109.79084 * 31.31136 * 21 19 18 36 36 H 1.08999 * 110.27290 * 93.79834 * 23 22 21 37 37 H 1.09002 * 110.27535 * 215.88000 * 23 22 21 38 38 H 1.07997 * 120.92884 * 179.72947 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3753 2.1126 -1.3938 5 1 1.5016 2.6170 0.8113 6 1 3.5924 1.4100 0.5824 7 6 2.0080 -1.2118 0.0005 8 1 1.5090 -2.1233 0.2947 9 6 3.3686 -1.2429 -0.3842 10 6 4.2444 -2.2047 0.1546 11 7 5.5091 -2.2323 -0.2035 12 6 6.0103 -1.3736 -1.0719 13 6 5.2156 -0.3889 -1.6542 14 7 5.7647 0.5112 -2.5709 15 6 7.1835 0.4223 -2.9249 16 1 7.5112 -0.6171 -2.9056 17 6 8.0269 1.2647 -1.9532 18 7 8.6502 2.3569 -2.7519 19 6 8.7444 1.8453 -4.1390 20 1 9.6476 1.2700 -4.3423 21 6 8.5325 3.0237 -5.1116 22 8 7.1259 3.1417 -5.3579 23 6 6.4110 2.1703 -4.5780 24 6 7.4225 1.0293 -4.3202 25 1 7.4628 0.2886 -5.1189 26 6 3.8745 -0.3081 -1.3097 27 1 -0.4850 0.8400 0.0004 28 1 3.8743 -2.9255 0.8687 29 1 7.0558 -1.4356 -1.3356 30 1 5.2063 1.1947 -2.9736 31 1 7.3859 1.6989 -1.1860 32 1 8.7911 0.6415 -1.4888 33 1 9.5635 2.5821 -2.3868 34 1 9.0560 2.8285 -6.0475 35 1 8.9071 3.9440 -4.6636 36 1 6.0868 2.6084 -3.6340 37 1 5.5528 1.7955 -5.1359 38 1 3.2350 0.4474 -1.7415 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163145580.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:25 Heat of formation + Delta-G solvation = -19.017188 kcal Electronic energy + Delta-G solvation = -21447.396836 eV Core-core repulsion = 18288.558077 eV Total energy + Delta-G solvation = -3158.838759 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.68152 -40.35700 -37.76888 -36.00708 -35.64606 -33.09123 -32.07066 -30.70499 -29.18224 -28.07674 -27.17543 -24.28400 -23.92040 -22.95205 -21.61438 -21.06842 -19.23623 -18.84145 -18.05215 -17.77710 -16.87821 -16.72732 -16.17776 -16.09235 -15.71672 -15.44503 -15.03989 -14.87958 -14.65007 -14.08833 -14.00186 -13.83201 -13.56378 -13.27202 -13.15358 -12.80340 -12.68868 -12.48530 -12.18540 -11.92604 -11.88762 -11.77997 -11.40064 -11.27421 -10.51823 -10.00572 -9.93809 -9.63262 -8.97721 -8.34640 -6.60378 0.70838 0.89877 1.21555 1.36124 1.44454 2.06687 2.37926 2.62254 2.79993 3.06072 3.35043 3.53852 3.69872 3.81483 4.02412 4.07444 4.12557 4.22604 4.29136 4.33865 4.47983 4.56185 4.63553 4.65881 4.70406 4.77116 4.84072 4.95127 4.96952 5.03091 5.19066 5.43033 5.63907 5.72599 5.82482 5.99115 6.13763 6.33366 6.39357 6.57954 6.70850 6.80607 7.65926 8.09398 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022623 B = 0.005490 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.385954 B = 5099.157388 C = 5841.108936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.056 3.944 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.468 4.468 8 H 0.068 0.932 9 C 0.069 3.931 10 C -0.057 4.057 11 N -0.442 5.442 12 C -0.092 4.092 13 C 0.210 3.790 14 N -0.737 5.737 15 C 0.154 3.846 16 H 0.099 0.901 17 C 0.025 3.975 18 N -0.667 5.667 19 C 0.041 3.959 20 H 0.117 0.883 21 C 0.061 3.939 22 O -0.402 6.402 23 C 0.062 3.938 24 C -0.128 4.128 25 H 0.125 0.875 26 C -0.295 4.295 27 H 0.296 0.704 28 H 0.134 0.866 29 H 0.153 0.847 30 H 0.396 0.604 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.352 0.648 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.734 6.775 -9.523 21.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.161 4.161 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.498 4.498 8 H 0.086 0.914 9 C 0.064 3.936 10 C -0.221 4.221 11 N -0.149 5.149 12 C -0.251 4.251 13 C 0.106 3.894 14 N -0.369 5.369 15 C 0.048 3.952 16 H 0.117 0.883 17 C -0.106 4.106 18 N -0.298 5.298 19 C -0.069 4.069 20 H 0.134 0.866 21 C -0.015 4.015 22 O -0.321 6.321 23 C -0.014 4.014 24 C -0.147 4.147 25 H 0.143 0.857 26 C -0.325 4.325 27 H 0.107 0.893 28 H 0.151 0.849 29 H 0.170 0.830 30 H 0.233 0.767 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.169 0.831 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 17.519 6.779 -9.408 21.009 hybrid contribution -0.522 0.551 0.106 0.767 sum 16.997 7.330 -9.302 20.716 Atomic orbital electron populations 1.69704 1.09016 1.31713 1.35623 1.26740 0.95235 1.03927 0.90204 0.85461 0.79311 0.76803 0.79338 1.18436 1.20335 1.18590 1.19453 0.93987 0.96014 1.40375 0.91393 1.18468 0.93503 0.91966 0.89673 1.22460 0.89009 1.04522 1.06152 1.66922 1.14951 1.22458 1.10597 1.21844 0.99801 0.98508 1.04990 1.18543 0.91868 0.89879 0.89120 1.44830 1.09561 1.35148 1.47405 1.21546 0.80854 1.00186 0.92644 0.88338 1.23372 0.98230 0.92506 0.96458 1.63586 1.27549 1.37048 1.01614 1.24115 0.97951 0.94624 0.90190 0.86558 1.23213 0.81591 0.98338 0.98386 1.88379 1.19175 1.57874 1.66715 1.23165 0.95247 0.87794 0.95220 1.23915 0.95556 0.97891 0.97372 0.85740 1.20880 0.95097 1.08075 1.08448 0.89292 0.84865 0.82955 0.76711 0.92069 0.91271 0.83118 0.89148 0.90896 0.92932 0.89739 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.70 13.93 21.82 0.30 -44.40 16 2 C 0.06 2.93 5.42 85.25 0.46 3.40 16 3 Si 0.97 42.90 24.53 68.60 1.68 44.59 16 4 H -0.26 -10.80 6.70 99.48 0.67 -10.13 16 5 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.26 -12.20 6.85 99.48 0.68 -11.51 16 7 C -0.47 -25.89 9.60 23.47 0.23 -25.66 16 8 H 0.07 3.98 8.06 -2.91 -0.02 3.96 16 9 C 0.07 3.55 5.12 -21.21 -0.11 3.45 16 10 C -0.06 -2.79 10.97 85.37 0.94 -1.85 16 11 N -0.44 -20.18 10.33 -193.05 -1.99 -22.18 16 12 C -0.09 -3.68 10.39 84.92 0.88 -2.79 16 13 C 0.21 8.40 6.66 38.25 0.25 8.66 16 14 N -0.74 -22.69 4.95 -315.86 -1.56 -24.26 16 15 C 0.15 3.49 2.74 45.61 0.13 3.62 16 16 H 0.10 2.14 6.44 -2.39 -0.02 2.12 16 17 C 0.02 0.53 7.32 86.17 0.63 1.16 16 18 N -0.67 -11.75 6.79 -474.17 -3.22 -14.97 16 19 C 0.04 0.61 4.47 46.29 0.21 0.81 16 20 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 21 C 0.06 1.03 7.41 72.41 0.54 1.56 16 22 O -0.40 -9.76 11.36 -148.98 -1.69 -11.45 16 23 C 0.06 1.45 5.64 72.54 0.41 1.86 16 24 C -0.13 -2.37 4.21 -8.70 -0.04 -2.41 16 25 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 26 C -0.29 -13.79 7.15 23.04 0.16 -13.63 16 27 H 0.30 14.21 8.30 -92.71 -0.77 13.44 16 28 H 0.13 6.26 8.06 -2.91 -0.02 6.23 16 29 H 0.15 5.00 6.21 -2.91 -0.02 4.98 16 30 H 0.40 12.05 6.12 -92.70 -0.57 11.49 16 31 H 0.06 1.69 7.92 -2.39 -0.02 1.67 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.35 4.58 8.90 -89.69 -0.80 3.78 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.23 8.05 -2.39 -0.02 1.21 16 36 H 0.05 1.41 6.67 -2.39 -0.02 1.40 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.10 4.87 4.77 -2.91 -0.01 4.86 16 Total: -1.00 -62.58 299.87 -2.12 -64.70 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: -0.33 Total: 29.80 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 4.69 Total: -21.83 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -6.47 Total: -105.80 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -1.69 Total: -11.45 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.68 Total: 44.59 kcal Total: -62.58 -2.12 -64.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163145580.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.685 kcal (2) G-P(sol) polarization free energy of solvation -62.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds