Wall clock time and date at job start Mon Mar 30 2020 01:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31530 * 1 3 3 Si 1.86795 * 119.99925 * 2 1 4 4 H 1.48497 * 109.47130 * 240.00107 * 3 2 1 5 5 H 1.48496 * 109.47205 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47147 * 120.00272 * 3 2 1 7 7 C 1.38883 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99752 * 179.97438 * 7 2 1 9 9 N 1.36778 * 120.00043 * 0.02562 * 7 2 1 10 10 C 1.38780 * 120.00045 * 180.27149 * 9 7 2 11 11 C 1.39354 * 119.93864 * 359.45202 * 10 9 7 12 12 C 1.37104 * 120.05266 * 179.72313 * 11 10 9 13 13 C 1.39828 * 119.94614 * 0.52183 * 12 11 10 14 14 C 1.47527 * 120.06144 * 179.76565 * 13 12 11 15 15 O 1.21591 * 120.00304 * 310.78932 * 14 13 12 16 16 N 1.34784 * 119.99912 * 130.78191 * 14 13 12 17 17 C 1.47079 * 120.88097 * 3.53592 * 16 14 13 18 18 C 1.52777 * 108.76582 * 231.11833 * 17 16 14 19 19 N 1.46889 * 109.42564 * 306.42520 * 18 17 16 20 20 C 1.46907 * 111.27130 * 62.96230 * 19 18 17 21 21 C 1.47074 * 120.88138 * 183.80779 * 16 14 13 22 22 C 1.39840 * 119.88188 * 359.75099 * 13 12 11 23 23 C 1.37102 * 119.94359 * 359.97438 * 22 13 12 24 24 H 0.96994 * 119.99669 * 359.97438 * 1 2 3 25 25 H 0.97004 * 120.00092 * 359.97438 * 9 7 2 26 26 H 1.08000 * 119.97563 * 359.97438 * 11 10 9 27 27 H 1.08007 * 120.03180 * 180.27061 * 12 11 10 28 28 H 1.09001 * 109.62884 * 350.88870 * 17 16 14 29 29 H 1.08997 * 109.62845 * 111.46524 * 17 16 14 30 30 H 1.09001 * 109.56979 * 186.36482 * 18 17 16 31 31 H 1.09011 * 109.35854 * 66.35569 * 18 17 16 32 32 H 1.00896 * 111.00544 * 187.10900 * 19 18 17 33 33 H 1.08996 * 109.49462 * 176.93584 * 20 19 18 34 34 H 1.08999 * 109.51174 * 56.87037 * 20 19 18 35 35 H 1.09000 * 109.63198 * 248.53163 * 21 16 14 36 36 H 1.09002 * 109.63033 * 9.11240 * 21 16 14 37 37 H 1.07999 * 120.02598 * 180.02562 * 22 13 12 38 38 H 1.07993 * 119.96964 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6964 1.2125 7 6 2.0097 -1.2028 0.0005 8 1 3.0897 -1.2027 0.0001 9 7 1.3258 -2.3873 0.0005 10 6 2.0197 -3.5892 0.0068 11 6 3.4132 -3.5877 0.0015 12 6 4.1011 -4.7737 0.0133 13 6 3.4032 -5.9854 0.0197 14 6 4.1408 -7.2630 0.0273 15 8 5.0410 -7.4501 -0.7684 16 7 3.8170 -8.2228 0.9164 17 6 2.6824 -8.0483 1.8359 18 6 3.1549 -8.3374 3.2598 19 7 3.7930 -9.6597 3.3038 20 6 4.9933 -9.7006 2.4577 21 6 4.5923 -9.4700 0.9967 22 6 2.0048 -5.9839 0.0193 23 6 1.3217 -4.7953 0.0131 24 1 -0.4849 0.8400 0.0004 25 1 0.3558 -2.3873 0.0005 26 1 3.9518 -2.6517 -0.0079 27 1 5.1811 -4.7721 0.0137 28 1 2.3153 -7.0239 1.7743 29 1 1.8853 -8.7425 1.5699 30 1 2.3015 -8.3227 3.9377 31 1 3.8738 -7.5763 3.5635 32 1 4.0105 -9.9250 4.2526 33 1 5.4731 -10.6746 2.5538 34 1 5.6870 -8.9209 2.7719 35 1 3.9824 -10.3035 0.6485 36 1 5.4874 -9.3851 0.3805 37 1 1.4634 -6.9184 0.0246 38 1 0.2417 -4.7937 0.0132 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187496.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:00 Heat of formation + Delta-G solvation = 3.358611 kcal Electronic energy + Delta-G solvation = -20789.506322 eV Core-core repulsion = 17631.637850 eV Total energy + Delta-G solvation = -3157.868472 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.98668 -38.27503 -37.17655 -35.13966 -33.53012 -32.15721 -31.21196 -30.11477 -28.52461 -26.49419 -24.96042 -23.63668 -22.21554 -21.75625 -20.59489 -18.93323 -17.96419 -17.11295 -16.68898 -15.99764 -15.43363 -15.10196 -14.81286 -14.77564 -14.46849 -14.11118 -13.81046 -13.29959 -13.08154 -12.65601 -12.61144 -12.31770 -12.21092 -12.00013 -11.48825 -11.44551 -11.25771 -11.19629 -11.14637 -10.79242 -10.49591 -10.26424 -9.87286 -9.26995 -8.89237 -8.87154 -8.30292 -8.14995 -6.85944 -6.78036 -3.93272 2.08136 2.41540 3.04535 3.06955 3.08815 3.23886 3.43558 3.90251 4.04405 4.55725 4.83298 4.93736 5.05522 5.07388 5.11849 5.19023 5.29389 5.47192 5.49645 5.66308 5.69057 5.79884 5.85400 5.89587 6.01747 6.26212 6.46463 6.65709 6.71966 6.79962 6.92397 7.05406 7.11011 7.22788 7.34881 7.39604 7.55494 7.80638 7.93291 8.54356 8.69254 9.12257 9.30555 10.37359 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.033124 B = 0.003706 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.097030 B = 7553.533150 C = 7767.902023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.307 4.307 8 H 0.107 0.893 9 N -0.538 5.538 10 C 0.217 3.783 11 C -0.229 4.229 12 C -0.006 4.006 13 C -0.279 4.279 14 C 0.580 3.420 15 O -0.560 6.560 16 N -0.618 5.618 17 C 0.105 3.895 18 C 0.041 3.959 19 N -0.690 5.690 20 C 0.044 3.956 21 C 0.116 3.884 22 C -0.027 4.027 23 C -0.245 4.245 24 H 0.279 0.721 25 H 0.401 0.599 26 H 0.118 0.882 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.037 0.963 32 H 0.342 0.658 33 H 0.083 0.917 34 H 0.034 0.966 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.672 -12.799 6.619 14.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.180 4.180 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.437 4.437 8 H 0.124 0.876 9 N -0.135 5.135 10 C 0.091 3.909 11 C -0.253 4.253 12 C -0.027 4.027 13 C -0.287 4.287 14 C 0.373 3.627 15 O -0.440 6.440 16 N -0.352 5.352 17 C -0.018 4.018 18 C -0.089 4.089 19 N -0.322 5.322 20 C -0.086 4.086 21 C -0.007 4.007 22 C -0.047 4.047 23 C -0.270 4.270 24 H 0.089 0.911 25 H 0.236 0.764 26 H 0.136 0.864 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.055 0.945 32 H 0.159 0.841 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.567 -12.608 5.690 14.285 hybrid contribution 0.432 1.317 0.647 1.530 sum 3.999 -11.291 6.337 13.551 Atomic orbital electron populations 1.69643 1.06176 1.29206 1.46851 1.25398 0.95759 1.00271 0.96616 0.85831 0.78912 0.79813 0.79378 1.19453 1.20555 1.19492 1.19826 0.93386 0.82631 1.47850 0.87570 1.41078 1.08458 1.02467 1.61496 1.17958 0.91768 0.85894 0.95249 1.20199 0.92426 0.97494 1.15202 1.20367 0.97961 0.90840 0.93540 1.18734 0.93314 0.91587 1.25054 1.18621 0.82134 0.83141 0.78805 1.90679 1.33149 1.80712 1.39420 1.48091 1.32139 1.17844 1.37129 1.21992 0.88525 1.03767 0.87516 1.22281 0.99221 0.89425 0.97954 1.60309 1.28328 1.28717 1.14795 1.22316 0.91228 1.01104 0.93984 1.21571 0.97132 0.86501 0.95520 1.20410 0.92336 0.96529 0.95421 1.20006 0.98312 0.91226 1.17407 0.91077 0.76377 0.86377 0.87703 0.87355 0.91351 0.89644 0.94498 0.84064 0.89906 0.94724 0.91438 0.89046 0.87604 0.87435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.45 13.05 55.49 0.72 -21.73 16 2 C 0.02 0.60 5.50 -17.44 -0.10 0.50 16 3 Si 0.93 18.98 29.55 -169.99 -5.02 13.95 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 7 C -0.31 -7.52 9.55 -15.11 -0.14 -7.67 16 8 H 0.11 2.51 5.65 -52.48 -0.30 2.21 16 9 N -0.54 -12.58 5.41 -9.59 -0.05 -12.63 16 10 C 0.22 4.69 6.62 -83.89 -0.56 4.14 16 11 C -0.23 -4.83 9.26 -39.58 -0.37 -5.20 16 12 C -0.01 -0.13 9.69 -39.40 -0.38 -0.51 16 13 C -0.28 -5.32 5.04 -104.92 -0.53 -5.85 16 14 C 0.58 10.85 7.24 -12.47 -0.09 10.76 16 15 O -0.56 -12.16 16.50 5.29 0.09 -12.07 16 16 N -0.62 -9.28 3.02 -173.98 -0.52 -9.81 16 17 C 0.11 1.33 5.37 -3.84 -0.02 1.31 16 18 C 0.04 0.44 6.68 -3.94 -0.03 0.41 16 19 N -0.69 -6.75 6.82 -113.77 -0.78 -7.53 16 20 C 0.04 0.45 6.70 -3.70 -0.02 0.42 16 21 C 0.12 1.48 6.59 -3.60 -0.02 1.46 16 22 C -0.03 -0.47 7.33 -39.39 -0.29 -0.76 16 23 C -0.25 -4.69 9.85 -39.58 -0.39 -5.08 16 24 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 25 H 0.40 9.44 7.89 -40.82 -0.32 9.11 16 26 H 0.12 2.48 5.93 -52.49 -0.31 2.17 16 27 H 0.10 1.98 8.06 -52.48 -0.42 1.56 16 28 H 0.11 1.48 4.67 -51.93 -0.24 1.24 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.34 2.61 8.90 -39.29 -0.35 2.26 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.26 7.08 -51.93 -0.37 0.90 16 37 H 0.11 1.61 6.96 -52.49 -0.37 1.24 16 38 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 311.46 15.07 4.69 4.69 Total: -1.00 -28.07 311.46 -8.58 -36.65 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -4.77 Total: 14.55 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -2.94 Total: -6.08 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.63 Total: -51.70 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.95 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.07 -8.58 -36.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187496.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.006 kcal (2) G-P(sol) polarization free energy of solvation -28.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds