Wall clock time and date at job start Mon Mar 30 2020 01:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31530 * 1 3 3 Si 1.86795 * 119.99925 * 2 1 4 4 H 1.48497 * 109.47130 * 240.00107 * 3 2 1 5 5 H 1.48496 * 109.47205 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47147 * 120.00272 * 3 2 1 7 7 C 1.38883 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99752 * 179.97438 * 7 2 1 9 9 N 1.36778 * 120.00043 * 0.02562 * 7 2 1 10 10 C 1.38780 * 120.00045 * 180.27149 * 9 7 2 11 11 C 1.39354 * 119.93864 * 359.45202 * 10 9 7 12 12 C 1.37104 * 120.05266 * 179.72313 * 11 10 9 13 13 C 1.39828 * 119.94614 * 0.52183 * 12 11 10 14 14 C 1.47527 * 120.06144 * 179.76565 * 13 12 11 15 15 O 1.21591 * 120.00304 * 310.78932 * 14 13 12 16 16 N 1.34784 * 119.99912 * 130.78191 * 14 13 12 17 17 C 1.47079 * 120.88097 * 3.53592 * 16 14 13 18 18 C 1.52777 * 108.76582 * 231.11833 * 17 16 14 19 19 N 1.46889 * 109.42564 * 306.42520 * 18 17 16 20 20 C 1.46907 * 111.27130 * 62.96230 * 19 18 17 21 21 C 1.47074 * 120.88138 * 183.80779 * 16 14 13 22 22 C 1.39840 * 119.88188 * 359.75099 * 13 12 11 23 23 C 1.37102 * 119.94359 * 359.97438 * 22 13 12 24 24 H 0.96994 * 119.99669 * 359.97438 * 1 2 3 25 25 H 0.97004 * 120.00092 * 359.97438 * 9 7 2 26 26 H 1.08000 * 119.97563 * 359.97438 * 11 10 9 27 27 H 1.08007 * 120.03180 * 180.27061 * 12 11 10 28 28 H 1.09001 * 109.62884 * 350.88870 * 17 16 14 29 29 H 1.08997 * 109.62845 * 111.46524 * 17 16 14 30 30 H 1.09001 * 109.56979 * 186.36482 * 18 17 16 31 31 H 1.09011 * 109.35854 * 66.35569 * 18 17 16 32 32 H 1.00896 * 111.00544 * 187.10900 * 19 18 17 33 33 H 1.08996 * 109.49462 * 176.93584 * 20 19 18 34 34 H 1.08999 * 109.51174 * 56.87037 * 20 19 18 35 35 H 1.09000 * 109.63198 * 248.53163 * 21 16 14 36 36 H 1.09002 * 109.63033 * 9.11240 * 21 16 14 37 37 H 1.07999 * 120.02598 * 180.02562 * 22 13 12 38 38 H 1.07993 * 119.96964 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6964 1.2125 7 6 2.0097 -1.2028 0.0005 8 1 3.0897 -1.2027 0.0001 9 7 1.3258 -2.3873 0.0005 10 6 2.0197 -3.5892 0.0068 11 6 3.4132 -3.5877 0.0015 12 6 4.1011 -4.7737 0.0133 13 6 3.4032 -5.9854 0.0197 14 6 4.1408 -7.2630 0.0273 15 8 5.0410 -7.4501 -0.7684 16 7 3.8170 -8.2228 0.9164 17 6 2.6824 -8.0483 1.8359 18 6 3.1549 -8.3374 3.2598 19 7 3.7930 -9.6597 3.3038 20 6 4.9933 -9.7006 2.4577 21 6 4.5923 -9.4700 0.9967 22 6 2.0048 -5.9839 0.0193 23 6 1.3217 -4.7953 0.0131 24 1 -0.4849 0.8400 0.0004 25 1 0.3558 -2.3873 0.0005 26 1 3.9518 -2.6517 -0.0079 27 1 5.1811 -4.7721 0.0137 28 1 2.3153 -7.0239 1.7743 29 1 1.8853 -8.7425 1.5699 30 1 2.3015 -8.3227 3.9377 31 1 3.8738 -7.5763 3.5635 32 1 4.0105 -9.9250 4.2526 33 1 5.4731 -10.6746 2.5538 34 1 5.6870 -8.9209 2.7719 35 1 3.9824 -10.3035 0.6485 36 1 5.4874 -9.3851 0.3805 37 1 1.4634 -6.9184 0.0246 38 1 0.2417 -4.7937 0.0132 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187496.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:59 Heat of formation + Delta-G solvation = -15.532188 kcal Electronic energy + Delta-G solvation = -20790.325488 eV Core-core repulsion = 17631.637850 eV Total energy + Delta-G solvation = -3158.687638 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.35126 -39.78760 -38.42600 -36.80415 -34.70475 -33.82706 -32.27940 -31.67312 -30.08156 -27.71140 -26.61557 -24.67616 -23.60496 -23.30978 -21.87723 -20.17245 -19.66699 -18.46717 -18.23833 -17.32663 -16.64259 -16.49330 -16.20981 -15.94901 -15.68085 -15.35183 -15.12314 -14.77487 -14.54820 -14.23485 -14.11949 -13.78538 -13.62030 -13.26835 -12.99979 -12.91840 -12.52570 -12.41466 -12.21697 -12.12253 -12.08815 -11.86025 -11.50982 -10.80223 -10.58707 -9.90121 -9.72828 -9.33239 -8.55742 -8.55185 -5.78027 0.49675 0.80632 1.41767 1.45933 1.51460 1.84029 2.10958 2.24530 2.86477 3.24633 3.34757 3.37590 3.75190 4.00277 4.06314 4.15061 4.23945 4.29006 4.37872 4.41158 4.59108 4.69774 4.79105 4.85681 4.87682 4.92810 5.03632 5.07493 5.24204 5.33645 5.55175 5.59708 5.71525 5.77264 5.86782 5.92684 6.28519 6.38463 6.51862 6.75506 7.24962 7.40578 7.54142 8.61651 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.033124 B = 0.003706 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.097030 B = 7553.533150 C = 7767.902023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.021 4.021 3 Si 0.995 3.005 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.326 4.326 8 H 0.106 0.894 9 N -0.562 5.562 10 C 0.209 3.791 11 C -0.242 4.242 12 C -0.013 4.013 13 C -0.271 4.271 14 C 0.575 3.425 15 O -0.597 6.597 16 N -0.610 5.610 17 C 0.099 3.901 18 C 0.045 3.955 19 N -0.687 5.687 20 C 0.050 3.950 21 C 0.110 3.890 22 C -0.014 4.014 23 C -0.243 4.243 24 H 0.278 0.722 25 H 0.396 0.604 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.023 0.977 32 H 0.358 0.642 33 H 0.110 0.890 34 H 0.023 0.977 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.140 0.860 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.809 -15.123 7.720 17.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.819 3.181 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.456 4.456 8 H 0.123 0.877 9 N -0.163 5.163 10 C 0.087 3.913 11 C -0.266 4.266 12 C -0.034 4.034 13 C -0.278 4.278 14 C 0.367 3.633 15 O -0.479 6.479 16 N -0.343 5.343 17 C -0.023 4.023 18 C -0.085 4.085 19 N -0.320 5.320 20 C -0.080 4.080 21 C -0.012 4.012 22 C -0.034 4.034 23 C -0.267 4.267 24 H 0.087 0.913 25 H 0.230 0.770 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.116 0.884 29 H 0.105 0.895 30 H 0.128 0.872 31 H 0.042 0.958 32 H 0.178 0.822 33 H 0.129 0.871 34 H 0.041 0.959 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.158 0.842 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.725 -15.008 6.839 16.908 hybrid contribution 0.493 1.640 0.344 1.746 sum 4.218 -13.368 7.183 15.751 Atomic orbital electron populations 1.69732 1.07306 1.29599 1.49267 1.26162 0.96482 1.02919 0.96599 0.84921 0.77671 0.76204 0.79334 1.19261 1.20401 1.18995 1.20035 0.93558 0.83545 1.48461 0.87686 1.41002 1.08048 1.02614 1.64656 1.18349 0.92120 0.86444 0.94389 1.20265 0.92576 0.97791 1.15976 1.20501 0.98469 0.90921 0.93471 1.19039 0.94176 0.91769 1.22830 1.18545 0.81789 0.83653 0.79269 1.90667 1.34580 1.81481 1.41201 1.48151 1.32466 1.17623 1.36022 1.22184 0.88148 1.03672 0.88281 1.22246 0.99898 0.89554 0.96851 1.60287 1.27929 1.27899 1.15896 1.22267 0.91261 1.02254 0.92189 1.21777 0.96557 0.85591 0.97304 1.20693 0.91747 0.97421 0.93507 1.20292 0.99432 0.90669 1.16259 0.91255 0.76970 0.87022 0.87117 0.88434 0.89485 0.87246 0.95827 0.82243 0.87150 0.95857 0.90051 0.90501 0.84238 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.23 13.05 21.66 0.28 -47.95 16 2 C -0.02 -1.06 5.50 84.89 0.47 -0.60 16 3 Si 1.00 39.67 29.55 68.60 2.03 41.69 16 4 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 6 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.33 -16.47 9.55 84.08 0.80 -15.66 16 8 H 0.11 5.13 5.65 -2.91 -0.02 5.11 16 9 N -0.56 -26.98 5.41 -184.25 -1.00 -27.98 16 10 C 0.21 9.06 6.62 38.58 0.26 9.31 16 11 C -0.24 -10.30 9.26 22.27 0.21 -10.09 16 12 C -0.01 -0.53 9.69 22.39 0.22 -0.31 16 13 C -0.27 -9.92 5.04 -20.06 -0.10 -10.02 16 14 C 0.58 20.64 7.24 86.69 0.63 21.27 16 15 O -0.60 -25.50 16.50 -4.00 -0.07 -25.57 16 16 N -0.61 -16.87 3.02 -822.59 -2.48 -19.35 16 17 C 0.10 2.18 5.37 86.19 0.46 2.64 16 18 C 0.04 0.80 6.68 86.23 0.58 1.37 16 19 N -0.69 -10.83 6.82 -513.85 -3.50 -14.33 16 20 C 0.05 0.88 6.70 86.38 0.58 1.46 16 21 C 0.11 2.54 6.59 86.35 0.57 3.11 16 22 C -0.01 -0.46 7.33 22.39 0.16 -0.29 16 23 C -0.24 -8.91 9.85 22.27 0.22 -8.69 16 24 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 25 H 0.40 19.23 7.89 -92.71 -0.73 18.49 16 26 H 0.11 4.84 5.93 -2.91 -0.02 4.82 16 27 H 0.11 4.19 8.06 -2.91 -0.02 4.16 16 28 H 0.10 2.36 4.67 -2.39 -0.01 2.35 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.02 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.36 4.04 8.90 -89.70 -0.80 3.24 16 33 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 2.02 7.08 -2.39 -0.02 2.01 16 37 H 0.14 3.68 6.96 -2.91 -0.02 3.66 16 38 H 0.13 4.18 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -61.28 311.46 -0.12 -61.39 By element: Atomic # 1 Polarization: 39.02 SS G_CDS: -0.42 Total: 38.59 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 5.05 Total: -6.50 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -6.70 Total: -109.61 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.07 Total: -25.57 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.69 kcal Total: -61.28 -0.12 -61.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187496.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.862 kcal (2) G-P(sol) polarization free energy of solvation -61.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds