Wall clock time and date at job start Mon Mar 30 2020 02:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86799 * 119.99874 * 2 1 4 4 H 1.48505 * 109.47324 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47453 * 240.00162 * 3 2 1 6 6 H 1.48507 * 109.47136 * 119.99913 * 3 2 1 7 7 C 1.40025 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99635 * 356.75947 * 7 2 1 9 9 C 1.41312 * 120.00426 * 176.76203 * 7 2 1 10 10 C 1.40592 * 119.78720 * 186.20716 * 9 7 2 11 11 C 1.38345 * 119.14655 * 179.76600 * 10 9 7 12 12 C 1.38634 * 118.68331 * 0.50223 * 11 10 9 13 13 C 1.39754 * 119.49158 * 359.74197 * 12 11 10 14 14 N 1.38833 * 119.58719 * 180.02562 * 13 12 11 15 15 C 1.46500 * 119.99791 * 359.97242 * 14 13 12 16 16 C 1.52997 * 109.47055 * 180.02562 * 15 14 13 17 17 C 1.56006 * 116.12514 * 303.98424 * 16 15 14 18 18 N 1.48342 * 104.98908 * 201.22079 * 17 16 15 19 19 C 1.49796 * 105.66726 * 357.50177 * 18 17 16 20 20 H 1.08994 * 116.40905 * 165.51888 * 19 18 17 21 21 C 1.56097 * 103.75169 * 294.96517 * 19 18 17 22 22 O 1.45533 * 116.02610 * 66.90526 * 16 15 14 23 23 C 1.57071 * 116.37084 * 187.01800 * 16 15 14 24 24 N 1.31982 * 120.83263 * 359.97438 * 13 12 11 25 25 H 0.97004 * 120.00256 * 175.06903 * 1 2 3 26 26 H 1.08001 * 120.42588 * 359.97438 * 10 9 7 27 27 H 1.08002 * 120.66092 * 180.21895 * 11 10 9 28 28 H 1.08001 * 120.25624 * 179.72582 * 12 11 10 29 29 H 0.96998 * 120.00264 * 179.97438 * 14 13 12 30 30 H 1.09001 * 109.47034 * 300.00302 * 15 14 13 31 31 H 1.09001 * 109.47213 * 60.00403 * 15 14 13 32 32 H 1.08995 * 110.33847 * 320.10370 * 17 16 15 33 33 H 1.09000 * 110.33489 * 82.34723 * 17 16 15 34 34 H 1.00902 * 110.99828 * 237.07646 * 18 17 16 35 35 H 1.08995 * 110.26216 * 190.46203 * 21 19 18 36 36 H 1.09007 * 110.26115 * 312.40733 * 21 19 18 37 37 H 1.08999 * 112.44384 * 294.45854 * 23 16 15 38 38 H 1.08995 * 112.44711 * 62.12309 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 1.2763 2.7465 0.0006 5 1 3.0950 1.6965 -1.2125 6 1 3.0951 1.6964 1.2126 7 6 2.0076 -1.2126 -0.0005 8 1 1.4689 -2.1472 0.0519 9 6 3.4190 -1.2135 -0.0697 10 6 4.1110 -2.4302 -0.2018 11 6 5.4925 -2.4153 -0.2732 12 6 6.1494 -1.1966 -0.2009 13 6 5.4058 -0.0212 -0.0644 14 7 6.0616 1.2003 0.0076 15 6 7.5242 1.2515 -0.0590 16 6 7.9888 2.7057 0.0427 17 6 7.3962 3.6914 -1.0113 18 7 8.3463 4.8301 -1.0484 19 6 9.3864 4.5229 -0.0150 20 1 10.3006 5.1150 -0.0564 21 6 8.5943 4.5554 1.3297 22 8 7.7527 3.3637 1.3191 23 6 9.5214 2.9658 -0.1823 24 7 4.0879 -0.0577 -0.0040 25 1 -0.4851 -0.8370 -0.0722 26 1 3.5708 -3.3642 -0.2505 27 1 6.0485 -3.3352 -0.3784 28 1 7.2276 -1.1559 -0.2496 29 1 5.5515 2.0199 0.1021 30 1 7.9458 0.6772 0.7659 31 1 7.8599 0.8279 -1.0056 32 1 7.3406 3.2124 -1.9888 33 1 6.4091 4.0318 -0.6987 34 1 7.8772 5.6993 -0.8422 35 1 9.2829 4.5272 2.1741 36 1 7.9726 5.4494 1.3801 37 1 10.1384 2.5156 0.5953 38 1 9.8494 2.6814 -1.1820 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163197436.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:26 Heat of formation + Delta-G solvation = -13.303827 kcal Electronic energy + Delta-G solvation = -21322.801089 eV Core-core repulsion = 18164.210080 eV Total energy + Delta-G solvation = -3158.591009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.96963 -40.54298 -37.05027 -35.46335 -35.28549 -33.02943 -32.28560 -30.59000 -30.17076 -27.20367 -26.45511 -25.64662 -23.68727 -22.30889 -21.98133 -20.67113 -20.18482 -18.59087 -18.06567 -17.36515 -16.96378 -16.53803 -16.24789 -15.85758 -15.66654 -15.45333 -15.17343 -14.54972 -14.24521 -14.10992 -13.73145 -13.60503 -13.51869 -13.26898 -13.01086 -12.72861 -12.58255 -12.44324 -12.38074 -12.28919 -12.14114 -11.60698 -11.44899 -10.80769 -10.75943 -10.31108 -9.68106 -9.46224 -9.21799 -8.59318 -6.80138 0.78842 1.02326 1.54160 1.70084 1.98005 2.27887 2.44606 2.54955 2.69303 3.06238 3.23129 3.37364 3.48844 3.66008 3.81673 4.11209 4.19281 4.33151 4.39558 4.49770 4.55752 4.61916 4.65849 4.72946 4.77131 4.82082 4.84850 4.89367 4.93998 5.02715 5.39214 5.40895 5.47140 5.61627 5.69966 5.84044 5.95950 6.16296 6.20064 6.52095 6.57415 6.85590 7.71768 7.97111 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023155 B = 0.005401 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.930184 B = 5183.077071 C = 6073.810925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.017 3.983 3 Si 1.200 2.800 4 H -0.338 1.338 5 H -0.293 1.293 6 H -0.298 1.298 7 C -0.515 4.515 8 H 0.066 0.934 9 C 0.272 3.728 10 C -0.329 4.329 11 C -0.006 4.006 12 C -0.345 4.345 13 C 0.423 3.577 14 N -0.734 5.734 15 C 0.172 3.828 16 C 0.060 3.940 17 C 0.021 3.979 18 N -0.670 5.670 19 C 0.046 3.954 20 H 0.168 0.832 21 C 0.003 3.997 22 O -0.402 6.402 23 C -0.131 4.131 24 N -0.644 5.644 25 H 0.281 0.719 26 H 0.105 0.895 27 H 0.146 0.854 28 H 0.142 0.858 29 H 0.392 0.608 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.346 0.654 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.299 8.856 -0.790 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.199 4.199 3 Si 1.036 2.964 4 H -0.273 1.273 5 H -0.222 1.222 6 H -0.227 1.227 7 C -0.548 4.548 8 H 0.084 0.916 9 C 0.147 3.853 10 C -0.352 4.352 11 C -0.030 4.030 12 C -0.370 4.370 13 C 0.186 3.814 14 N -0.368 5.368 15 C 0.048 3.952 16 C 0.020 3.980 17 C -0.109 4.109 18 N -0.299 5.299 19 C -0.063 4.063 20 H 0.185 0.815 21 C -0.074 4.074 22 O -0.323 6.323 23 C -0.169 4.169 24 N -0.374 5.374 25 H 0.091 0.909 26 H 0.123 0.877 27 H 0.164 0.836 28 H 0.160 0.840 29 H 0.226 0.774 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.163 0.837 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.122 0.878 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 21.969 10.773 -1.096 24.493 hybrid contribution -1.073 -2.241 0.831 2.620 sum 20.896 8.533 -0.265 22.573 Atomic orbital electron populations 1.70664 1.08436 1.32564 1.34210 1.28420 0.95588 1.07793 0.88100 0.81088 0.69224 0.67752 0.78299 1.27288 1.22174 1.22675 1.20738 0.91593 0.95677 1.46765 0.91589 1.18418 0.93154 0.87561 0.86197 1.21544 0.95486 0.97195 1.20969 1.21187 0.93028 0.97905 0.90896 1.20981 0.99967 0.91052 1.24990 1.18510 0.87777 0.86877 0.88283 1.44379 1.06066 1.04888 1.81484 1.20937 0.78678 0.92427 1.03160 1.24468 0.97193 0.92247 0.84112 1.23545 0.94986 0.92901 0.99469 1.63345 1.13392 1.04515 1.48675 1.25116 0.96549 0.96973 0.87650 0.81522 1.24824 0.94200 0.87689 1.00730 1.89528 1.65903 1.39694 1.37148 1.24213 0.92759 0.95046 1.04886 1.65626 1.08452 1.29120 1.34183 0.90877 0.87708 0.83630 0.84031 0.77436 0.90662 0.88358 0.89706 0.93480 0.83665 0.89020 0.90971 0.87750 0.87412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.93 13.65 21.84 0.30 -48.64 16 2 C 0.02 1.00 5.52 85.29 0.47 1.48 16 3 Si 1.20 62.55 25.45 68.60 1.75 64.29 16 4 H -0.34 -17.25 7.11 99.48 0.71 -16.54 16 5 H -0.29 -15.06 6.94 99.48 0.69 -14.37 16 6 H -0.30 -15.66 6.94 99.48 0.69 -14.97 16 7 C -0.51 -30.31 9.57 23.46 0.22 -30.08 16 8 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 9 C 0.27 14.91 6.42 40.19 0.26 15.17 16 10 C -0.33 -15.73 9.83 22.87 0.22 -15.50 16 11 C -0.01 -0.25 10.15 22.39 0.23 -0.02 16 12 C -0.34 -13.17 9.34 22.73 0.21 -12.96 16 13 C 0.42 18.56 7.65 133.40 1.02 19.58 16 14 N -0.73 -26.61 5.58 -345.00 -1.93 -28.54 16 15 C 0.17 4.38 4.95 86.38 0.43 4.81 16 16 C 0.06 1.32 1.47 -8.32 -0.01 1.31 16 17 C 0.02 0.47 6.15 87.07 0.54 1.00 16 18 N -0.67 -11.44 7.32 -463.36 -3.39 -14.83 16 19 C 0.05 0.59 5.90 46.90 0.28 0.86 16 20 H 0.17 1.11 8.14 -2.39 -0.02 1.09 16 21 C 0.00 0.05 7.12 73.06 0.52 0.57 16 22 O -0.40 -10.44 11.29 -148.98 -1.68 -12.12 16 23 C -0.13 -1.88 6.58 33.50 0.22 -1.66 16 24 N -0.64 -33.69 4.56 -186.58 -0.85 -34.54 16 25 H 0.28 15.85 8.72 -92.70 -0.81 15.04 16 26 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 27 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 28 H 0.14 4.24 6.68 -2.91 -0.02 4.22 16 29 H 0.39 15.05 8.10 -92.71 -0.75 14.30 16 30 H 0.08 1.86 7.92 -2.39 -0.02 1.84 16 31 H 0.10 2.13 7.92 -2.39 -0.02 2.11 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.05 1.22 7.97 -2.39 -0.02 1.20 16 34 H 0.35 5.29 8.54 -89.69 -0.77 4.52 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.17 7.87 -2.38 -0.02 1.15 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -69.71 308.08 -1.70 -71.41 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -0.50 Total: 18.40 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 4.61 Total: -15.44 kcal Atomic # 7 Polarization: -120.67 SS G_CDS: -5.87 Total: -126.54 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -1.68 Total: -12.12 kcal Atomic # 14 Polarization: 62.55 SS G_CDS: 1.75 Total: 64.29 kcal Total: -69.71 -1.70 -71.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163197436.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.104 kcal (2) G-P(sol) polarization free energy of solvation -69.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds