Wall clock time and date at job start Mon Mar 30 2020 02:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86793 * 120.00565 * 2 1 4 4 H 1.48510 * 109.46862 * 0.02562 * 3 2 1 5 5 H 1.48493 * 109.47357 * 119.99906 * 3 2 1 6 6 H 1.48494 * 109.47237 * 240.00696 * 3 2 1 7 7 C 1.39930 * 119.99414 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99774 * 154.41905 * 7 2 1 9 9 C 1.41427 * 120.00344 * 334.41480 * 7 2 1 10 10 C 1.40799 * 120.62163 * 334.72954 * 9 7 2 11 11 N 1.31465 * 120.56248 * 179.72554 * 10 9 7 12 12 C 1.32018 * 122.05859 * 0.59251 * 11 10 9 13 13 C 1.39284 * 121.20777 * 359.66867 * 12 11 10 14 14 N 1.39722 * 120.36617 * 180.02562 * 13 12 11 15 15 C 1.46506 * 119.99672 * 359.97438 * 14 13 12 16 16 C 1.52996 * 109.47223 * 179.97438 * 15 14 13 17 17 C 1.56000 * 116.13119 * 303.09606 * 16 15 14 18 18 N 1.50376 * 104.01898 * 200.94476 * 17 16 15 19 19 C 1.49794 * 105.85297 * 357.08389 * 18 17 16 20 20 H 1.08997 * 116.41037 * 165.81096 * 19 18 17 21 21 C 1.56099 * 103.75482 * 295.25531 * 19 18 17 22 22 O 1.44121 * 105.40612 * 71.48051 * 21 19 18 23 23 C 1.57058 * 116.37023 * 185.03326 * 16 15 14 24 24 C 1.38698 * 119.27794 * 0.02965 * 13 12 11 25 25 H 0.96998 * 120.00238 * 174.38789 * 1 2 3 26 26 H 1.08001 * 119.71678 * 359.97438 * 10 9 7 27 27 H 1.08005 * 119.39302 * 179.69657 * 12 11 10 28 28 H 0.96997 * 120.00633 * 179.97438 * 14 13 12 29 29 H 1.08999 * 109.47055 * 300.00331 * 15 14 13 30 30 H 1.08997 * 109.46878 * 59.99571 * 15 14 13 31 31 H 1.09003 * 110.33659 * 320.10245 * 17 16 15 32 32 H 1.09001 * 110.33674 * 82.33880 * 17 16 15 33 33 H 1.00900 * 110.66321 * 236.73396 * 18 17 16 34 34 H 1.08997 * 110.26437 * 312.49960 * 21 19 18 35 35 H 1.09006 * 110.33834 * 190.49702 * 21 19 18 36 36 H 1.09001 * 112.45612 * 294.46259 * 23 16 15 37 37 H 1.09000 * 112.45455 * 62.12876 * 23 16 15 38 38 H 1.07997 * 120.93083 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 1.2775 2.7464 0.0006 5 1 3.0962 1.6962 1.2124 6 1 3.0961 1.6963 -1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0085 -1.2576 -0.4044 9 6 1.4047 -2.3769 0.5278 10 6 0.3899 -2.2815 1.4992 11 7 -0.1737 -3.3650 1.9857 12 6 0.1870 -4.5754 1.6014 13 6 1.1860 -4.7625 0.6490 14 7 1.5536 -6.0516 0.2548 15 6 0.8875 -7.2157 0.8443 16 6 1.4719 -8.4959 0.2440 17 6 1.3994 -8.6218 -1.3092 18 7 1.5277 -10.0987 -1.5614 19 6 1.7350 -10.7268 -0.2174 20 1 1.6122 -11.8085 -0.1636 21 6 3.1109 -10.1568 0.2504 22 8 2.8658 -8.7706 0.5597 23 6 0.7882 -9.8431 0.6734 24 6 1.8121 -3.6552 0.0963 25 1 -0.4850 -0.8360 -0.0821 26 1 0.0691 -1.3099 1.8447 27 1 -0.3018 -5.4363 2.0332 28 1 2.2497 -6.1758 -0.4092 29 1 1.0432 -7.2157 1.9231 30 1 -0.1805 -7.1696 0.6314 31 1 0.4451 -8.2436 -1.6759 32 1 2.2250 -8.0811 -1.7721 33 1 2.3069 -10.2890 -2.1736 34 1 3.8460 -10.2406 -0.5499 35 1 3.4581 -10.6857 1.1380 36 1 0.9176 -10.0559 1.7345 37 1 -0.2574 -9.8946 0.3696 38 1 2.5897 -3.7693 -0.6445 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163203484.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:30 Heat of formation + Delta-G solvation = 7.972580 kcal Electronic energy + Delta-G solvation = -20829.212924 eV Core-core repulsion = 17671.544529 eV Total energy + Delta-G solvation = -3157.668395 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.18465 -38.55255 -35.61835 -34.45169 -33.93830 -31.39947 -30.17065 -29.78317 -27.86634 -25.67701 -25.00536 -24.65026 -21.98716 -21.21911 -20.87302 -19.63725 -17.94573 -17.46210 -16.80376 -15.84281 -15.52961 -15.31041 -15.01544 -14.79445 -14.08248 -13.94585 -13.56453 -13.01694 -12.86847 -12.82743 -12.45764 -12.34367 -12.24374 -11.87042 -11.76340 -11.64152 -11.48581 -11.37521 -11.17225 -10.73167 -10.41558 -9.99703 -9.90961 -9.64468 -9.15365 -8.73524 -8.13183 -7.88516 -7.29284 -6.58574 -4.53792 2.75782 2.95395 3.15486 3.26177 3.29177 3.36797 3.69222 3.81409 3.92870 4.00077 4.29126 4.40916 4.54891 4.61459 4.90007 5.11645 5.17335 5.25412 5.42372 5.51132 5.53655 5.56966 5.65866 5.77216 5.82365 6.07659 6.09467 6.37433 6.46889 6.55548 6.65322 6.86065 6.97185 7.34691 7.50535 7.62554 7.84070 7.96939 8.26567 8.34135 8.64538 8.79657 9.69357 9.99297 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.039443 B = 0.003514 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.711954 B = 7967.090586 C = 8261.603755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.038 3.962 3 Si 1.068 2.932 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.077 0.923 9 C 0.083 3.917 10 C -0.044 4.044 11 N -0.435 5.435 12 C -0.114 4.114 13 C 0.197 3.803 14 N -0.751 5.751 15 C 0.172 3.828 16 C 0.071 3.929 17 C 0.022 3.978 18 N -0.670 5.670 19 C 0.032 3.968 20 H 0.135 0.865 21 C 0.013 3.987 22 O -0.369 6.369 23 C -0.142 4.142 24 C -0.273 4.273 25 H 0.301 0.699 26 H 0.134 0.866 27 H 0.116 0.884 28 H 0.392 0.608 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.338 0.662 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.503 -17.226 -1.965 17.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.184 4.184 3 Si 0.891 3.109 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.538 4.538 8 H 0.095 0.905 9 C 0.078 3.922 10 C -0.211 4.211 11 N -0.142 5.142 12 C -0.272 4.272 13 C 0.095 3.905 14 N -0.385 5.385 15 C 0.046 3.954 16 C 0.031 3.969 17 C -0.107 4.107 18 N -0.299 5.299 19 C -0.077 4.077 20 H 0.152 0.848 21 C -0.065 4.065 22 O -0.289 6.289 23 C -0.181 4.181 24 C -0.303 4.303 25 H 0.115 0.885 26 H 0.151 0.849 27 H 0.134 0.866 28 H 0.226 0.774 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.154 0.846 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.879 -15.679 -1.192 15.836 hybrid contribution 2.168 -1.916 -0.926 3.037 sum 4.046 -17.594 -2.119 18.178 Atomic orbital electron populations 1.70458 1.08209 1.34498 1.27850 1.27105 0.95654 1.04445 0.91238 0.83597 0.75637 0.73633 0.78039 1.19717 1.19854 1.20130 1.20530 1.03138 0.93849 1.36299 0.90477 1.18332 0.91326 0.92466 0.90095 1.22539 1.02219 0.95449 1.00880 1.66876 1.24869 0.98576 1.23842 1.21194 1.04985 0.94303 1.06688 1.18537 0.94228 0.83748 0.93974 1.44234 1.44003 1.01923 1.48311 1.20626 0.95956 0.81179 0.97602 1.24522 0.82297 0.95708 0.94389 1.23965 1.03204 0.88567 0.94947 1.63859 1.47109 1.08181 1.10724 1.24943 0.93445 0.99820 0.89523 0.84786 1.24296 0.97593 0.83708 1.00915 1.89167 1.27068 1.25541 1.87109 1.24206 1.00382 0.93284 1.00185 1.20660 1.09406 0.91267 1.08987 0.88547 0.84857 0.86649 0.77444 0.91598 0.90710 0.88991 0.91503 0.84614 0.91389 0.90759 0.89195 0.88356 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.91 12.33 55.55 0.69 -20.22 16 2 C 0.04 0.97 4.95 -17.34 -0.09 0.88 16 3 Si 1.07 21.29 30.00 -169.99 -5.10 16.19 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.51 -13.52 9.01 -37.74 -0.34 -13.86 16 8 H 0.08 1.98 7.96 -52.49 -0.42 1.56 16 9 C 0.08 2.25 5.31 -106.69 -0.57 1.69 16 10 C -0.04 -1.20 9.15 -16.74 -0.15 -1.35 16 11 N -0.43 -11.40 10.33 -12.37 -0.13 -11.53 16 12 C -0.11 -2.70 10.49 -17.08 -0.18 -2.88 16 13 C 0.20 4.43 6.66 -83.70 -0.56 3.87 16 14 N -0.75 -13.30 5.61 -58.57 -0.33 -13.63 16 15 C 0.17 2.48 4.99 -4.04 -0.02 2.46 16 16 C 0.07 0.85 1.44 -86.82 -0.13 0.72 16 17 C 0.02 0.25 6.35 -0.27 0.00 0.25 16 18 N -0.67 -6.37 7.37 -96.24 -0.71 -7.08 16 19 C 0.03 0.27 5.90 -62.16 -0.37 -0.10 16 20 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 21 C 0.01 0.13 7.09 38.82 0.28 0.40 16 22 O -0.37 -4.93 11.14 -35.23 -0.39 -5.32 16 23 C -0.14 -1.34 6.58 -22.25 -0.15 -1.49 16 24 C -0.27 -6.79 9.80 -38.39 -0.38 -7.17 16 25 H 0.30 8.30 6.68 -40.82 -0.27 8.02 16 26 H 0.13 3.70 6.49 -52.49 -0.34 3.36 16 27 H 0.12 2.41 6.73 -52.48 -0.35 2.06 16 28 H 0.39 6.60 8.05 -40.82 -0.33 6.27 16 29 H 0.07 0.99 7.96 -51.93 -0.41 0.58 16 30 H 0.07 1.03 7.96 -51.93 -0.41 0.62 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.78 7.99 -51.93 -0.42 0.37 16 33 H 0.34 2.78 8.54 -39.29 -0.34 2.44 16 34 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 310.83 15.07 4.68 4.68 Total: -1.00 -29.75 310.83 -8.96 -38.71 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -2.64 Total: -16.58 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.48 Total: -52.46 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.39 Total: -5.32 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.10 Total: 16.19 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.75 -8.96 -38.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163203484.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.687 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds