Wall clock time and date at job start Mon Mar 30 2020 02:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86793 * 120.00565 * 2 1 4 4 H 1.48510 * 109.46862 * 0.02562 * 3 2 1 5 5 H 1.48493 * 109.47357 * 119.99906 * 3 2 1 6 6 H 1.48494 * 109.47237 * 240.00696 * 3 2 1 7 7 C 1.39930 * 119.99414 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99774 * 154.41905 * 7 2 1 9 9 C 1.41427 * 120.00344 * 334.41480 * 7 2 1 10 10 C 1.40799 * 120.62163 * 334.72954 * 9 7 2 11 11 N 1.31465 * 120.56248 * 179.72554 * 10 9 7 12 12 C 1.32018 * 122.05859 * 0.59251 * 11 10 9 13 13 C 1.39284 * 121.20777 * 359.66867 * 12 11 10 14 14 N 1.39722 * 120.36617 * 180.02562 * 13 12 11 15 15 C 1.46506 * 119.99672 * 359.97438 * 14 13 12 16 16 C 1.52996 * 109.47223 * 179.97438 * 15 14 13 17 17 C 1.56000 * 116.13119 * 303.09606 * 16 15 14 18 18 N 1.50376 * 104.01898 * 200.94476 * 17 16 15 19 19 C 1.49794 * 105.85297 * 357.08389 * 18 17 16 20 20 H 1.08997 * 116.41037 * 165.81096 * 19 18 17 21 21 C 1.56099 * 103.75482 * 295.25531 * 19 18 17 22 22 O 1.44121 * 105.40612 * 71.48051 * 21 19 18 23 23 C 1.57058 * 116.37023 * 185.03326 * 16 15 14 24 24 C 1.38698 * 119.27794 * 0.02965 * 13 12 11 25 25 H 0.96998 * 120.00238 * 174.38789 * 1 2 3 26 26 H 1.08001 * 119.71678 * 359.97438 * 10 9 7 27 27 H 1.08005 * 119.39302 * 179.69657 * 12 11 10 28 28 H 0.96997 * 120.00633 * 179.97438 * 14 13 12 29 29 H 1.08999 * 109.47055 * 300.00331 * 15 14 13 30 30 H 1.08997 * 109.46878 * 59.99571 * 15 14 13 31 31 H 1.09003 * 110.33659 * 320.10245 * 17 16 15 32 32 H 1.09001 * 110.33674 * 82.33880 * 17 16 15 33 33 H 1.00900 * 110.66321 * 236.73396 * 18 17 16 34 34 H 1.08997 * 110.26437 * 312.49960 * 21 19 18 35 35 H 1.09006 * 110.33834 * 190.49702 * 21 19 18 36 36 H 1.09001 * 112.45612 * 294.46259 * 23 16 15 37 37 H 1.09000 * 112.45455 * 62.12876 * 23 16 15 38 38 H 1.07997 * 120.93083 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 1.2775 2.7464 0.0006 5 1 3.0962 1.6962 1.2124 6 1 3.0961 1.6963 -1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0085 -1.2576 -0.4044 9 6 1.4047 -2.3769 0.5278 10 6 0.3899 -2.2815 1.4992 11 7 -0.1737 -3.3650 1.9857 12 6 0.1870 -4.5754 1.6014 13 6 1.1860 -4.7625 0.6490 14 7 1.5536 -6.0516 0.2548 15 6 0.8875 -7.2157 0.8443 16 6 1.4719 -8.4959 0.2440 17 6 1.3994 -8.6218 -1.3092 18 7 1.5277 -10.0987 -1.5614 19 6 1.7350 -10.7268 -0.2174 20 1 1.6122 -11.8085 -0.1636 21 6 3.1109 -10.1568 0.2504 22 8 2.8658 -8.7706 0.5597 23 6 0.7882 -9.8431 0.6734 24 6 1.8121 -3.6552 0.0963 25 1 -0.4850 -0.8360 -0.0821 26 1 0.0691 -1.3099 1.8447 27 1 -0.3018 -5.4363 2.0332 28 1 2.2497 -6.1758 -0.4092 29 1 1.0432 -7.2157 1.9231 30 1 -0.1805 -7.1696 0.6314 31 1 0.4451 -8.2436 -1.6759 32 1 2.2250 -8.0811 -1.7721 33 1 2.3069 -10.2890 -2.1736 34 1 3.8460 -10.2406 -0.5499 35 1 3.4581 -10.6857 1.1380 36 1 0.9176 -10.0559 1.7345 37 1 -0.2574 -9.8946 0.3696 38 1 2.5897 -3.7693 -0.6445 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163203484.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:30 Heat of formation + Delta-G solvation = -14.439695 kcal Electronic energy + Delta-G solvation = -20830.184793 eV Core-core repulsion = 17671.544529 eV Total energy + Delta-G solvation = -3158.640264 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.02128 -40.45409 -37.23008 -35.81437 -35.29826 -32.94085 -31.81186 -30.54926 -29.40014 -27.52225 -26.16860 -25.71739 -23.84264 -22.72103 -22.02784 -20.58614 -19.82096 -18.35239 -17.95281 -17.45883 -16.94442 -16.84205 -16.32592 -15.81387 -15.70777 -15.46462 -14.93657 -14.65647 -14.23366 -13.79447 -13.67282 -13.56886 -13.47607 -13.27128 -13.04587 -12.90578 -12.68093 -12.53628 -12.41658 -12.33692 -11.98448 -11.76540 -11.33672 -11.02952 -10.77016 -10.13147 -9.89165 -9.50228 -9.30189 -8.31671 -6.58863 0.84177 0.97515 1.53150 1.67548 1.83529 2.30917 2.35153 2.53828 2.69528 2.97721 3.21019 3.35577 3.47792 3.59060 3.78669 4.10166 4.16828 4.30709 4.37520 4.42503 4.46940 4.55017 4.59639 4.65541 4.71195 4.73945 4.82923 4.85168 4.99288 5.03797 5.32121 5.42309 5.56522 5.59780 5.65828 5.88441 5.97508 6.17228 6.44913 6.59216 6.72827 6.90304 7.68674 7.96250 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.039443 B = 0.003514 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.711954 B = 7967.090586 C = 8261.603755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.005 3.995 3 Si 1.121 2.879 4 H -0.270 1.270 5 H -0.263 1.263 6 H -0.255 1.255 7 C -0.539 4.539 8 H 0.079 0.921 9 C 0.063 3.937 10 C -0.074 4.074 11 N -0.448 5.448 12 C -0.115 4.115 13 C 0.211 3.789 14 N -0.737 5.737 15 C 0.167 3.833 16 C 0.066 3.934 17 C 0.025 3.975 18 N -0.671 5.671 19 C 0.045 3.955 20 H 0.165 0.835 21 C 0.007 3.993 22 O -0.400 6.400 23 C -0.137 4.137 24 C -0.292 4.292 25 H 0.283 0.717 26 H 0.117 0.883 27 H 0.146 0.854 28 H 0.398 0.602 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.346 0.654 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.183 -19.351 -2.195 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.212 4.212 3 Si 0.937 3.063 4 H -0.194 1.194 5 H -0.188 1.188 6 H -0.179 1.179 7 C -0.567 4.567 8 H 0.097 0.903 9 C 0.058 3.942 10 C -0.239 4.239 11 N -0.155 5.155 12 C -0.274 4.274 13 C 0.107 3.893 14 N -0.369 5.369 15 C 0.042 3.958 16 C 0.026 3.974 17 C -0.105 4.105 18 N -0.300 5.300 19 C -0.064 4.064 20 H 0.182 0.818 21 C -0.071 4.071 22 O -0.320 6.320 23 C -0.176 4.176 24 C -0.323 4.323 25 H 0.096 0.904 26 H 0.134 0.866 27 H 0.164 0.836 28 H 0.232 0.768 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.163 0.837 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.568 -17.859 -1.439 18.100 hybrid contribution 1.960 -1.530 -0.842 2.626 sum 4.529 -19.389 -2.281 20.041 Atomic orbital electron populations 1.70573 1.09031 1.33320 1.29841 1.28606 0.95579 1.07654 0.89390 0.82965 0.74735 0.69361 0.79237 1.19395 1.18768 1.17889 1.20770 1.03478 0.94818 1.37635 0.90332 1.18597 0.91592 0.93725 0.90335 1.22287 1.03855 0.95230 1.02511 1.66834 1.25190 0.99252 1.24208 1.21727 1.04935 0.94316 1.06461 1.18511 0.92930 0.85232 0.92657 1.44309 1.43656 1.01205 1.47707 1.20825 0.96513 0.80982 0.97474 1.24410 0.82551 0.95620 0.94792 1.23859 1.02426 0.89879 0.94318 1.63873 1.47713 1.06815 1.11638 1.25113 0.92045 1.01055 0.88198 0.81764 1.24508 0.98561 0.82135 1.01884 1.89128 1.27563 1.27880 1.87478 1.24233 1.00713 0.91531 1.01088 1.20837 1.10184 0.91494 1.09769 0.90434 0.86573 0.83632 0.76779 0.91817 0.89614 0.89712 0.92449 0.83698 0.90744 0.89466 0.88271 0.87726 0.87596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.20 12.33 21.82 0.27 -43.93 16 2 C 0.01 0.26 4.95 85.25 0.42 0.68 16 3 Si 1.12 42.80 30.00 68.60 2.06 44.86 16 4 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 6 H -0.25 -8.81 7.11 99.48 0.71 -8.11 16 7 C -0.54 -29.37 9.01 23.47 0.21 -29.16 16 8 H 0.08 4.12 7.96 -2.91 -0.02 4.10 16 9 C 0.06 3.50 5.31 -21.21 -0.11 3.39 16 10 C -0.07 -4.19 9.15 85.37 0.78 -3.41 16 11 N -0.45 -23.83 10.33 -193.06 -1.99 -25.83 16 12 C -0.12 -5.36 10.49 84.92 0.89 -4.47 16 13 C 0.21 9.41 6.66 38.25 0.25 9.66 16 14 N -0.74 -25.19 5.61 -339.23 -1.90 -27.09 16 15 C 0.17 4.49 4.99 86.38 0.43 4.92 16 16 C 0.07 1.45 1.44 -8.33 -0.01 1.43 16 17 C 0.02 0.51 6.35 86.66 0.55 1.06 16 18 N -0.67 -10.92 7.37 -458.40 -3.38 -14.30 16 19 C 0.05 0.58 5.90 46.90 0.28 0.86 16 20 H 0.17 1.19 8.14 -2.39 -0.02 1.18 16 21 C 0.01 0.11 7.09 73.06 0.52 0.63 16 22 O -0.40 -9.88 11.14 -148.98 -1.66 -11.54 16 23 C -0.14 -2.16 6.58 33.49 0.22 -1.94 16 24 C -0.29 -14.70 9.80 23.04 0.23 -14.48 16 25 H 0.28 16.42 6.68 -92.71 -0.62 15.81 16 26 H 0.12 6.82 6.49 -2.91 -0.02 6.80 16 27 H 0.15 5.79 6.73 -2.91 -0.02 5.77 16 28 H 0.40 12.96 8.05 -92.71 -0.75 12.21 16 29 H 0.06 1.78 7.96 -2.39 -0.02 1.77 16 30 H 0.09 2.16 7.96 -2.39 -0.02 2.15 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 1.28 7.99 -2.39 -0.02 1.26 16 33 H 0.35 4.79 8.54 -89.69 -0.77 4.02 16 34 H 0.07 1.10 7.87 -2.39 -0.02 1.08 16 35 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -65.69 310.83 -2.22 -67.91 By element: Atomic # 1 Polarization: 41.00 SS G_CDS: -0.27 Total: 40.73 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 4.66 Total: -30.81 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -7.01 Total: -111.15 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -1.66 Total: -11.54 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.06 Total: 44.86 kcal Total: -65.69 -2.22 -67.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163203484.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.472 kcal (2) G-P(sol) polarization free energy of solvation -65.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds