Wall clock time and date at job start Mon Mar 30 2020 01:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30894 * 1 3 3 Si 1.86807 * 120.00366 * 2 1 4 4 H 1.48495 * 109.46843 * 269.99918 * 3 2 1 5 5 H 1.48502 * 109.46771 * 29.99764 * 3 2 1 6 6 H 1.48505 * 109.47100 * 149.99930 * 3 2 1 7 7 C 1.39874 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99873 * 163.28096 * 7 2 1 9 9 C 1.41197 * 119.99864 * 343.27560 * 7 2 1 10 10 C 1.41319 * 120.57062 * 335.71687 * 9 7 2 11 11 C 1.36564 * 118.41147 * 179.74827 * 10 9 7 12 12 C 1.39708 * 119.48818 * 0.25298 * 11 10 9 13 13 N 1.38369 * 119.42985 * 179.97438 * 12 11 10 14 14 C 1.46507 * 119.99931 * 0.02562 * 13 12 11 15 15 C 1.50700 * 109.46871 * 179.97438 * 14 13 12 16 16 O 1.21275 * 120.00421 * 359.97438 * 15 14 13 17 17 N 1.34778 * 119.99809 * 179.97438 * 15 14 13 18 18 C 1.47031 * 125.64453 * 359.69296 * 17 15 14 19 19 C 1.54315 * 107.27067 * 180.96642 * 18 17 15 20 20 C 1.55155 * 102.86669 * 22.52507 * 19 18 17 21 21 C 1.47424 * 125.64963 * 179.97438 * 17 15 14 22 22 N 1.32740 * 121.14166 * 0.02562 * 12 11 10 23 23 C 1.31485 * 121.72986 * 359.97438 * 22 12 11 24 24 H 0.97006 * 119.99793 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.79772 * 0.02562 * 10 9 7 26 26 H 1.07994 * 120.25753 * 180.22603 * 11 10 9 27 27 H 0.97003 * 120.00156 * 179.97438 * 13 12 11 28 28 H 1.08995 * 109.46635 * 299.99538 * 14 13 12 29 29 H 1.08998 * 109.46897 * 59.99657 * 14 13 12 30 30 H 1.08994 * 109.87910 * 300.50658 * 18 17 15 31 31 H 1.08998 * 109.88441 * 61.68110 * 18 17 15 32 32 H 1.09001 * 110.92506 * 264.10587 * 19 18 17 33 33 H 1.09006 * 110.58743 * 140.78588 * 19 18 17 34 34 H 1.08999 * 111.00847 * 206.22519 * 20 19 18 35 35 H 1.09007 * 111.00462 * 82.37570 * 20 19 18 36 36 H 1.09002 * 110.36612 * 274.67072 * 21 17 15 37 37 H 1.08995 * 110.36852 * 36.88538 * 21 17 15 38 38 H 1.08000 * 119.81552 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0463 -1.4001 5 1 1.4405 2.6527 0.7000 6 1 3.5407 1.4401 0.7001 7 6 2.0083 -1.2114 -0.0005 8 1 3.0541 -1.2310 -0.2696 9 6 1.3470 -2.4084 0.3508 10 6 0.1949 -2.3797 1.1687 11 6 -0.4127 -3.5632 1.4770 12 6 0.1188 -4.7579 0.9849 13 7 -0.4976 -5.9563 1.2984 14 6 -1.6973 -5.9651 2.1393 15 6 -2.1681 -7.3842 2.3280 16 8 -1.5616 -8.2982 1.8107 17 7 -3.2631 -7.6376 3.0717 18 6 -4.0851 -6.6298 3.7576 19 6 -5.2094 -7.3830 4.4991 20 6 -4.6216 -8.8099 4.6599 21 6 -3.8318 -8.9717 3.3370 22 7 1.2054 -4.7631 0.2225 23 6 1.8273 -3.6513 -0.1028 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1982 -1.4439 1.5375 26 1 -1.2971 -3.5757 2.0968 27 1 -0.1358 -6.7907 0.9608 28 1 -1.4639 -5.5273 3.1097 29 1 -2.4829 -5.3830 1.6575 30 1 -3.4743 -6.0763 4.4707 31 1 -4.5185 -5.9458 3.0279 32 1 -6.1214 -7.4066 3.9026 33 1 -5.3961 -6.9308 5.4732 34 1 -5.4152 -9.5534 4.7344 35 1 -3.9561 -8.8635 5.5216 36 1 -4.5013 -9.2662 2.5288 37 1 -3.0357 -9.7066 3.4559 38 1 2.7093 -3.6916 -0.7247 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164570497.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:36 Heat of formation + Delta-G solvation = 1.024345 kcal Electronic energy + Delta-G solvation = -20275.555872 eV Core-core repulsion = 17117.586179 eV Total energy + Delta-G solvation = -3157.969693 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.18065 -38.50576 -37.54018 -34.90815 -33.45245 -32.00421 -30.59260 -29.66955 -29.11529 -27.06160 -24.54379 -23.38157 -21.91786 -21.49897 -20.67099 -19.31441 -17.54405 -17.24978 -16.85768 -16.09869 -15.62279 -15.20123 -15.04857 -14.47728 -13.83282 -13.72710 -13.69237 -13.47689 -13.18238 -12.90780 -12.58149 -12.31595 -12.06014 -11.77053 -11.68412 -11.55744 -11.53649 -11.22092 -11.11253 -11.03413 -10.55927 -9.93468 -9.76956 -9.42908 -8.86119 -8.74794 -8.23367 -7.99275 -6.83272 -6.60993 -4.17926 2.55513 2.72851 2.76486 2.99583 3.09259 3.14285 3.30321 3.96701 4.06182 4.23438 4.27453 4.54784 4.70472 4.71701 4.92900 5.03310 5.30300 5.37162 5.47382 5.47522 5.53262 5.54808 5.65979 5.78969 5.80482 6.05353 6.09649 6.46131 6.61029 6.87570 7.18707 7.25737 7.33966 7.42157 7.76249 7.92756 8.04512 8.26689 8.46330 8.68391 8.85748 8.93442 9.74218 10.24572 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.034098 B = 0.003311 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.974704 B = 8454.367380 C = 9160.996976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.456 4.456 8 H 0.078 0.922 9 C 0.029 3.971 10 C -0.093 4.093 11 C -0.206 4.206 12 C 0.280 3.720 13 N -0.735 5.735 14 C 0.133 3.867 15 C 0.527 3.473 16 O -0.533 6.533 17 N -0.623 5.623 18 C 0.095 3.905 19 C -0.132 4.132 20 C -0.134 4.134 21 C 0.105 3.895 22 N -0.519 5.519 23 C 0.015 3.985 24 H 0.278 0.722 25 H 0.128 0.872 26 H 0.096 0.904 27 H 0.401 0.599 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.044 -9.049 10.127 18.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.096 0.904 9 C 0.024 3.976 10 C -0.120 4.120 11 C -0.230 4.230 12 C 0.048 3.952 13 N -0.378 5.378 14 C 0.004 3.996 15 C 0.316 3.684 16 O -0.409 6.409 17 N -0.359 5.359 18 C -0.028 4.028 19 C -0.169 4.169 20 C -0.172 4.172 21 C -0.018 4.018 22 N -0.234 5.234 23 C -0.144 4.144 24 H 0.089 0.911 25 H 0.146 0.854 26 H 0.114 0.886 27 H 0.238 0.762 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.632 -10.045 9.565 18.102 hybrid contribution -0.059 1.434 0.167 1.445 sum -11.691 -8.610 9.732 17.479 Atomic orbital electron populations 1.69815 1.07478 1.28960 1.37117 1.25851 0.94730 1.01172 0.92489 0.86323 0.80563 0.80734 0.79136 1.19609 1.20268 1.18566 1.19320 0.97609 0.90818 1.40982 0.90407 1.18365 0.93446 0.93561 0.92199 1.21295 0.97131 0.96443 0.97114 1.20795 1.02451 0.92851 1.06865 1.17657 0.93163 0.84759 0.99640 1.43308 1.29321 1.06839 1.58376 1.20680 0.90122 0.92007 0.96841 1.20526 0.78682 0.91889 0.77308 1.90691 1.55212 1.46882 1.48082 1.48464 1.27769 1.08506 1.51176 1.22129 0.92637 0.91604 0.96448 1.22639 0.97670 0.95544 1.01088 1.22802 0.99830 0.97234 0.97366 1.22219 0.97464 0.85420 0.96661 1.66505 1.08625 1.32938 1.15337 1.22229 1.01379 0.87242 1.03536 0.91072 0.85394 0.88599 0.76213 0.90293 0.90251 0.90825 0.90812 0.90364 0.89795 0.89759 0.90489 0.91448 0.90346 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.65 10.91 55.54 0.61 -20.05 16 2 C 0.07 1.83 5.19 -17.34 -0.09 1.74 16 3 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.03 9.07 -37.85 -0.34 -12.37 16 8 H 0.08 1.96 7.90 -52.48 -0.41 1.55 16 9 C 0.03 0.79 5.59 -106.65 -0.60 0.19 16 10 C -0.09 -2.39 8.74 -39.02 -0.34 -2.73 16 11 C -0.21 -4.78 9.24 -39.64 -0.37 -5.14 16 12 C 0.28 6.64 7.64 -155.13 -1.19 5.45 16 13 N -0.74 -14.90 5.68 -61.53 -0.35 -15.25 16 14 C 0.13 2.08 4.54 -5.19 -0.02 2.05 16 15 C 0.53 7.97 7.92 -10.98 -0.09 7.89 16 16 O -0.53 -9.96 15.92 5.56 0.09 -9.88 16 17 N -0.62 -7.06 3.33 -170.51 -0.57 -7.63 16 18 C 0.09 0.75 6.48 -3.06 -0.02 0.73 16 19 C -0.13 -0.73 6.95 -24.90 -0.17 -0.91 16 20 C -0.13 -0.81 7.08 -24.57 -0.17 -0.99 16 21 C 0.10 0.97 6.91 -2.52 -0.02 0.96 16 22 N -0.52 -13.29 10.37 -11.79 -0.12 -13.42 16 23 C 0.01 0.38 10.97 -16.75 -0.18 0.19 16 24 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 25 H 0.13 3.32 6.20 -52.49 -0.33 3.00 16 26 H 0.10 1.90 6.64 -52.49 -0.35 1.55 16 27 H 0.40 8.45 7.55 -40.82 -0.31 8.14 16 28 H 0.08 1.12 7.90 -51.93 -0.41 0.71 16 29 H 0.08 1.16 7.90 -51.93 -0.41 0.75 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.82 8.03 -51.93 -0.42 0.40 16 38 H 0.13 3.06 8.06 -52.49 -0.42 2.64 16 LS Contribution 318.92 15.07 4.81 4.81 Total: -1.00 -31.41 318.92 -9.32 -40.73 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -5.15 Total: 10.04 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -3.60 Total: -2.93 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.43 Total: -56.34 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.41 -9.32 -40.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164570497.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.757 kcal (2) G-P(sol) polarization free energy of solvation -31.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds