Wall clock time and date at job start Mon Mar 30 2020 01:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30894 * 1 3 3 Si 1.86807 * 120.00366 * 2 1 4 4 H 1.48495 * 109.46843 * 269.99918 * 3 2 1 5 5 H 1.48502 * 109.46771 * 29.99764 * 3 2 1 6 6 H 1.48505 * 109.47100 * 149.99930 * 3 2 1 7 7 C 1.39874 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99873 * 163.28096 * 7 2 1 9 9 C 1.41197 * 119.99864 * 343.27560 * 7 2 1 10 10 C 1.41319 * 120.57062 * 335.71687 * 9 7 2 11 11 C 1.36564 * 118.41147 * 179.74827 * 10 9 7 12 12 C 1.39708 * 119.48818 * 0.25298 * 11 10 9 13 13 N 1.38369 * 119.42985 * 179.97438 * 12 11 10 14 14 C 1.46507 * 119.99931 * 0.02562 * 13 12 11 15 15 C 1.50700 * 109.46871 * 179.97438 * 14 13 12 16 16 O 1.21275 * 120.00421 * 359.97438 * 15 14 13 17 17 N 1.34778 * 119.99809 * 179.97438 * 15 14 13 18 18 C 1.47031 * 125.64453 * 359.69296 * 17 15 14 19 19 C 1.54315 * 107.27067 * 180.96642 * 18 17 15 20 20 C 1.55155 * 102.86669 * 22.52507 * 19 18 17 21 21 C 1.47424 * 125.64963 * 179.97438 * 17 15 14 22 22 N 1.32740 * 121.14166 * 0.02562 * 12 11 10 23 23 C 1.31485 * 121.72986 * 359.97438 * 22 12 11 24 24 H 0.97006 * 119.99793 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.79772 * 0.02562 * 10 9 7 26 26 H 1.07994 * 120.25753 * 180.22603 * 11 10 9 27 27 H 0.97003 * 120.00156 * 179.97438 * 13 12 11 28 28 H 1.08995 * 109.46635 * 299.99538 * 14 13 12 29 29 H 1.08998 * 109.46897 * 59.99657 * 14 13 12 30 30 H 1.08994 * 109.87910 * 300.50658 * 18 17 15 31 31 H 1.08998 * 109.88441 * 61.68110 * 18 17 15 32 32 H 1.09001 * 110.92506 * 264.10587 * 19 18 17 33 33 H 1.09006 * 110.58743 * 140.78588 * 19 18 17 34 34 H 1.08999 * 111.00847 * 206.22519 * 20 19 18 35 35 H 1.09007 * 111.00462 * 82.37570 * 20 19 18 36 36 H 1.09002 * 110.36612 * 274.67072 * 21 17 15 37 37 H 1.08995 * 110.36852 * 36.88538 * 21 17 15 38 38 H 1.08000 * 119.81552 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0463 -1.4001 5 1 1.4405 2.6527 0.7000 6 1 3.5407 1.4401 0.7001 7 6 2.0083 -1.2114 -0.0005 8 1 3.0541 -1.2310 -0.2696 9 6 1.3470 -2.4084 0.3508 10 6 0.1949 -2.3797 1.1687 11 6 -0.4127 -3.5632 1.4770 12 6 0.1188 -4.7579 0.9849 13 7 -0.4976 -5.9563 1.2984 14 6 -1.6973 -5.9651 2.1393 15 6 -2.1681 -7.3842 2.3280 16 8 -1.5616 -8.2982 1.8107 17 7 -3.2631 -7.6376 3.0717 18 6 -4.0851 -6.6298 3.7576 19 6 -5.2094 -7.3830 4.4991 20 6 -4.6216 -8.8099 4.6599 21 6 -3.8318 -8.9717 3.3370 22 7 1.2054 -4.7631 0.2225 23 6 1.8273 -3.6513 -0.1028 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1982 -1.4439 1.5375 26 1 -1.2971 -3.5757 2.0968 27 1 -0.1358 -6.7907 0.9608 28 1 -1.4639 -5.5273 3.1097 29 1 -2.4829 -5.3830 1.6575 30 1 -3.4743 -6.0763 4.4707 31 1 -4.5185 -5.9458 3.0279 32 1 -6.1214 -7.4066 3.9026 33 1 -5.3961 -6.9308 5.4732 34 1 -5.4152 -9.5534 4.7344 35 1 -3.9561 -8.8635 5.5216 36 1 -4.5013 -9.2662 2.5288 37 1 -3.0357 -9.7066 3.4559 38 1 2.7093 -3.6916 -0.7247 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164570497.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:35 Heat of formation + Delta-G solvation = -18.925650 kcal Electronic energy + Delta-G solvation = -20276.420968 eV Core-core repulsion = 17117.586179 eV Total energy + Delta-G solvation = -3158.834790 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24957 -40.29347 -38.52008 -36.61332 -35.23811 -32.90154 -32.49837 -31.19038 -30.06959 -28.48425 -26.24129 -24.43138 -23.73639 -22.53662 -21.99975 -20.35535 -19.19071 -18.84559 -17.72598 -17.46056 -17.17824 -16.84520 -16.35570 -15.83811 -15.44564 -14.91832 -14.86289 -14.54173 -14.30963 -14.24002 -13.81281 -13.66697 -13.50526 -13.45659 -13.22217 -13.01149 -12.75264 -12.23164 -12.18289 -12.13335 -11.66999 -11.58162 -11.24555 -11.11522 -10.53789 -10.17726 -9.93453 -9.76069 -8.69134 -8.45163 -6.13907 0.88394 1.11994 1.40716 1.43560 1.54021 1.60185 1.73516 2.26309 2.66360 2.81931 3.35552 3.68275 3.78389 3.84088 4.06519 4.16349 4.30156 4.32935 4.38490 4.49266 4.60231 4.67193 4.75362 4.86380 4.92870 4.96288 5.00334 5.13427 5.24735 5.28867 5.38231 5.40750 5.54205 5.84323 5.97866 6.28703 6.47356 6.57602 6.79606 6.91954 6.94464 7.06678 7.82728 8.39995 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.034098 B = 0.003311 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.974704 B = 8454.367380 C = 9160.996976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.266 1.266 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.490 4.490 8 H 0.077 0.923 9 C 0.002 3.998 10 C -0.106 4.106 11 C -0.201 4.201 12 C 0.281 3.719 13 N -0.735 5.735 14 C 0.130 3.870 15 C 0.524 3.476 16 O -0.580 6.580 17 N -0.617 5.617 18 C 0.082 3.918 19 C -0.123 4.123 20 C -0.124 4.124 21 C 0.094 3.906 22 N -0.541 5.541 23 C -0.005 4.005 24 H 0.288 0.712 25 H 0.122 0.878 26 H 0.133 0.867 27 H 0.396 0.604 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.951 -8.306 11.733 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.521 4.521 8 H 0.095 0.905 9 C -0.004 4.004 10 C -0.133 4.133 11 C -0.225 4.225 12 C 0.047 3.953 13 N -0.377 5.377 14 C 0.002 3.998 15 C 0.313 3.687 16 O -0.460 6.460 17 N -0.351 5.351 18 C -0.040 4.040 19 C -0.161 4.161 20 C -0.162 4.162 21 C -0.027 4.027 22 N -0.257 5.257 23 C -0.162 4.162 24 H 0.098 0.902 25 H 0.140 0.860 26 H 0.151 0.849 27 H 0.231 0.769 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.603 -9.317 11.212 19.939 hybrid contribution 0.401 1.080 -0.283 1.186 sum -13.203 -8.238 10.928 19.016 Atomic orbital electron populations 1.69849 1.08771 1.30433 1.37033 1.26672 0.95542 1.04241 0.91405 0.85195 0.79056 0.76081 0.79292 1.19060 1.19004 1.18484 1.19562 0.97888 0.91874 1.42785 0.90530 1.18670 0.94441 0.94122 0.93133 1.21355 0.97308 0.97115 0.97480 1.21052 1.03172 0.91697 1.06578 1.17995 0.92566 0.86181 0.98544 1.43457 1.30317 1.05375 1.58516 1.20919 0.88749 0.93080 0.97045 1.20405 0.79514 0.91073 0.77697 1.90670 1.57096 1.47819 1.50439 1.48552 1.26555 1.10449 1.49523 1.22486 0.93196 0.91402 0.96903 1.22667 0.96898 0.94585 1.01929 1.22793 0.99906 0.98358 0.95135 1.22451 0.97319 0.84096 0.98882 1.66542 1.09762 1.32922 1.16460 1.22361 1.02081 0.87405 1.04320 0.90170 0.85978 0.84902 0.76858 0.88263 0.88616 0.89863 0.90004 0.89335 0.87763 0.87568 0.90398 0.91023 0.92082 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.58 10.91 21.82 0.24 -42.34 16 2 C 0.03 1.74 5.19 85.23 0.44 2.18 16 3 Si 0.98 37.78 29.59 68.60 2.03 39.81 16 4 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 5 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 6 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 7 C -0.49 -26.38 9.07 23.39 0.21 -26.17 16 8 H 0.08 3.97 7.90 -2.91 -0.02 3.95 16 9 C 0.00 0.08 5.59 -21.18 -0.12 -0.03 16 10 C -0.11 -5.46 8.74 22.64 0.20 -5.26 16 11 C -0.20 -9.16 9.24 22.23 0.21 -8.95 16 12 C 0.28 13.27 7.64 133.32 1.02 14.29 16 13 N -0.74 -29.44 5.68 -348.58 -1.98 -31.42 16 14 C 0.13 3.84 4.54 85.63 0.39 4.23 16 15 C 0.52 15.46 7.92 87.66 0.69 16.16 16 16 O -0.58 -22.02 15.92 -3.01 -0.05 -22.07 16 17 N -0.62 -12.97 3.33 -811.77 -2.70 -15.67 16 18 C 0.08 1.05 6.48 86.72 0.56 1.62 16 19 C -0.12 -0.91 6.95 31.78 0.22 -0.69 16 20 C -0.12 -1.13 7.08 31.99 0.23 -0.91 16 21 C 0.09 1.62 6.91 86.86 0.60 2.23 16 22 N -0.54 -28.18 10.37 -191.21 -1.98 -30.17 16 23 C 0.00 -0.24 10.97 85.36 0.94 0.69 16 24 H 0.29 13.23 8.30 -92.70 -0.77 12.46 16 25 H 0.12 6.38 6.20 -2.91 -0.02 6.36 16 26 H 0.13 4.92 6.64 -2.91 -0.02 4.90 16 27 H 0.40 16.85 7.55 -92.71 -0.70 16.14 16 28 H 0.10 2.56 7.90 -2.39 -0.02 2.54 16 29 H 0.10 2.55 7.90 -2.39 -0.02 2.53 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.10 0.42 8.14 -2.38 -0.02 0.41 16 34 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 1.26 8.03 -2.39 -0.02 1.24 16 38 H 0.13 6.66 8.06 -2.91 -0.02 6.64 16 Total: -1.00 -69.39 318.92 1.52 -67.87 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: 0.37 Total: 34.60 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 5.59 Total: -0.61 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -6.42 Total: -119.60 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.05 Total: -22.07 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Total: -69.39 1.52 -67.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164570497.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.944 kcal (2) G-P(sol) polarization free energy of solvation -69.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds