Wall clock time and date at job start Mon Mar 30 2020 02:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86804 * 120.00111 * 2 1 4 4 H 1.48505 * 109.46927 * 265.37647 * 3 2 1 5 5 H 1.48495 * 109.46768 * 25.37468 * 3 2 1 6 6 H 1.48490 * 109.47065 * 145.37635 * 3 2 1 7 7 C 1.40057 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99969 * 162.94682 * 7 2 1 9 9 C 1.41272 * 120.00037 * 342.94791 * 7 2 1 10 10 C 1.40719 * 120.15776 * 334.73704 * 9 7 2 11 11 N 1.31899 * 119.92874 * 179.97438 * 10 9 7 12 12 C 1.32160 * 120.27381 * 359.97438 * 11 10 9 13 13 C 1.39917 * 120.31936 * 0.02562 * 12 11 10 14 14 N 1.38826 * 119.96735 * 180.26993 * 13 12 11 15 15 C 1.47967 * 111.00744 * 239.71797 * 14 13 12 16 16 C 1.55149 * 104.95896 * 213.91264 * 15 14 13 17 17 C 1.53783 * 101.50481 * 35.68938 * 16 15 14 18 18 C 1.53158 * 111.46845 * 204.61457 * 17 16 15 19 19 C 1.54815 * 103.56056 * 238.49312 * 18 17 16 20 20 O 1.44555 * 104.86569 * 23.72662 * 19 18 17 21 21 C 1.44762 * 105.51511 * 320.38256 * 20 19 18 22 22 C 1.47797 * 110.99888 * 118.93214 * 14 13 12 23 23 N 1.32260 * 120.06423 * 0.02562 * 13 12 11 24 24 H 0.96999 * 120.00211 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.03288 * 359.94877 * 10 9 7 26 26 H 1.07991 * 119.83930 * 180.02562 * 12 11 10 27 27 H 1.09003 * 110.34137 * 332.78735 * 15 14 13 28 28 H 1.09002 * 110.34423 * 95.04390 * 15 14 13 29 29 H 1.08994 * 111.02078 * 277.63504 * 16 15 14 30 30 H 1.09006 * 111.05103 * 153.75464 * 16 15 14 31 31 H 1.09005 * 110.60942 * 357.00894 * 18 17 16 32 32 H 1.09006 * 110.60995 * 119.82102 * 18 17 16 33 33 H 1.09003 * 110.36367 * 142.57237 * 19 18 17 34 34 H 1.08999 * 110.36248 * 264.77370 * 19 18 17 35 35 H 1.08994 * 110.43448 * 280.43905 * 21 20 19 36 36 H 1.08999 * 110.42609 * 157.94663 * 21 20 19 37 37 H 1.09000 * 109.98599 * 243.53507 * 22 14 13 38 38 H 1.09005 * 109.98093 * 4.84145 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.5865 1.9900 -1.3956 5 1 1.3933 2.6789 0.6000 6 1 3.4865 1.4703 0.7954 7 6 2.0075 -1.2129 -0.0005 8 1 3.0519 -1.2334 -0.2748 9 6 1.3477 -2.4096 0.3577 10 6 0.2175 -2.3704 1.1950 11 7 -0.3954 -3.4904 1.5262 12 6 0.0473 -4.6508 1.0744 13 6 1.1701 -4.7026 0.2412 14 7 1.6255 -5.9250 -0.2337 15 6 3.0176 -6.1772 0.1998 16 6 3.6654 -6.9630 -0.9707 17 6 2.9901 -6.3108 -2.1888 18 6 2.9751 -7.2558 -3.3940 19 6 3.7373 -6.4648 -4.4850 20 8 4.5687 -5.5340 -3.7555 21 6 3.7533 -5.0674 -2.6542 22 6 1.5781 -5.9705 -1.7102 23 7 1.7952 -3.5875 -0.0982 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1475 -1.4242 1.5664 26 1 -0.4601 -5.5635 1.3497 27 1 3.5414 -5.2347 0.3593 28 1 3.0284 -6.7765 1.1102 29 1 3.4230 -8.0239 -0.9109 30 1 4.7446 -6.8113 -0.9943 31 1 3.4951 -8.1847 -3.1598 32 1 1.9516 -7.4594 -3.7091 33 1 4.3541 -7.1380 -5.0804 34 1 3.0361 -5.9287 -5.1245 35 1 3.0584 -4.2995 -2.9938 36 1 4.3823 -4.6842 -1.8507 37 1 0.8784 -6.7399 -2.0369 38 1 1.2753 -4.9999 -2.1032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165253570.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:35 Heat of formation + Delta-G solvation = 3.319540 kcal Electronic energy + Delta-G solvation = -21682.977869 eV Core-core repulsion = 18525.107703 eV Total energy + Delta-G solvation = -3157.870166 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52083 -39.05929 -37.04409 -34.20396 -33.05148 -31.81196 -30.32813 -28.72488 -28.52314 -26.21282 -24.95306 -23.06364 -22.19028 -21.94988 -20.56388 -19.33476 -17.74774 -16.42984 -16.11577 -15.95463 -15.45709 -15.12951 -14.93689 -14.83592 -14.29995 -13.41811 -13.31644 -13.20971 -13.13092 -12.30117 -12.12811 -11.86456 -11.68546 -11.58567 -11.45696 -11.27388 -11.23830 -10.95218 -10.73856 -10.55141 -10.47923 -10.33149 -9.92600 -9.75074 -9.56334 -9.19998 -8.33422 -7.72439 -7.37196 -7.07718 -4.76126 2.35429 2.70144 2.95988 2.99559 3.07470 3.74465 4.07435 4.33426 4.38568 4.54400 4.60840 4.95149 5.13726 5.16624 5.33147 5.48025 5.54589 5.68773 5.76229 5.78037 5.81826 5.90746 5.96392 5.98783 6.04764 6.13604 6.18426 6.26990 6.31891 6.39247 6.46458 6.83556 6.89026 6.92442 7.16046 7.22610 7.50204 7.86307 8.08579 8.36943 8.54856 9.09825 9.58178 9.89634 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018853 B = 0.005907 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.805989 B = 4738.977530 C = 5751.426823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.076 3.924 3 Si 0.923 3.077 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.426 4.426 8 H 0.089 0.911 9 C 0.237 3.763 10 C 0.008 3.992 11 N -0.441 5.441 12 C -0.068 4.068 13 C 0.252 3.748 14 N -0.472 5.472 15 C 0.047 3.953 16 C -0.110 4.110 17 C -0.108 4.108 18 C -0.139 4.139 19 C 0.044 3.956 20 O -0.382 6.382 21 C 0.067 3.933 22 C 0.068 3.932 23 N -0.553 5.553 24 H 0.289 0.711 25 H 0.159 0.841 26 H 0.133 0.867 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.927 -8.281 -4.793 10.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.145 4.145 3 Si 0.746 3.254 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.459 4.459 8 H 0.107 0.893 9 C 0.107 3.893 10 C -0.163 4.163 11 N -0.153 5.153 12 C -0.225 4.225 13 C 0.018 3.982 14 N -0.196 5.196 15 C -0.080 4.080 16 C -0.148 4.148 17 C -0.110 4.110 18 C -0.177 4.177 19 C -0.033 4.033 20 O -0.301 6.301 21 C -0.009 4.009 22 C -0.059 4.059 23 N -0.275 5.275 24 H 0.100 0.900 25 H 0.176 0.824 26 H 0.151 0.849 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.584 -8.517 -4.625 10.721 hybrid contribution 0.439 1.288 -0.365 1.409 sum 5.022 -7.229 -4.990 10.118 Atomic orbital electron populations 1.69717 1.07810 1.30412 1.32974 1.26016 0.94859 1.01914 0.91704 0.86076 0.80379 0.79221 0.79737 1.19077 1.19761 1.18142 1.19312 0.98195 0.89231 1.39208 0.89330 1.19193 0.90797 0.90497 0.88770 1.23791 0.97332 0.95880 0.99255 1.67955 1.28567 0.98659 1.20162 1.22401 0.98975 0.95830 1.05343 1.20619 0.93852 0.88526 0.95234 1.61777 1.21496 1.27109 1.09174 1.23104 0.87390 0.99725 0.97731 1.22619 0.99598 0.99408 0.93199 1.22169 0.96827 0.96005 0.95953 1.22838 1.01495 0.98766 0.94614 1.23438 0.93878 0.91454 0.94508 1.89151 1.37613 1.61229 1.42113 1.23338 0.94003 0.94650 0.88943 1.22688 0.94508 1.01657 0.87087 1.68828 1.34132 0.98548 1.26007 0.89967 0.82416 0.84917 0.91968 0.90629 0.90716 0.90628 0.90485 0.90278 0.89579 0.92512 0.91478 0.88708 0.90638 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.06 10.95 55.55 0.61 -18.45 16 2 C 0.08 1.80 5.15 -17.34 -0.09 1.71 16 3 Si 0.92 17.56 29.59 -169.99 -5.03 12.53 16 4 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 6 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.43 -10.85 9.29 -37.75 -0.35 -11.20 16 8 H 0.09 2.21 7.90 -52.48 -0.41 1.80 16 9 C 0.24 6.27 6.40 -84.83 -0.54 5.72 16 10 C 0.01 0.21 9.87 -16.59 -0.16 0.04 16 11 N -0.44 -11.28 10.47 -12.12 -0.13 -11.41 16 12 C -0.07 -1.61 11.17 -16.78 -0.19 -1.79 16 13 C 0.25 5.75 5.16 -155.02 -0.80 4.95 16 14 N -0.47 -8.89 5.17 -170.14 -0.88 -9.77 16 15 C 0.05 0.79 6.55 -2.10 -0.01 0.78 16 16 C -0.11 -1.50 5.76 -25.19 -0.14 -1.64 16 17 C -0.11 -1.56 0.80 -153.99 -0.12 -1.68 16 18 C -0.14 -1.61 6.38 -25.69 -0.16 -1.77 16 19 C 0.04 0.53 7.67 38.11 0.29 0.83 16 20 O -0.38 -6.00 11.66 -35.23 -0.41 -6.41 16 21 C 0.07 1.09 6.67 37.23 0.25 1.34 16 22 C 0.07 1.15 5.94 -3.37 -0.02 1.13 16 23 N -0.55 -13.68 9.20 -10.14 -0.09 -13.77 16 24 H 0.29 6.32 8.29 -40.82 -0.34 5.98 16 25 H 0.16 4.17 6.18 -52.49 -0.32 3.84 16 26 H 0.13 2.84 8.06 -52.49 -0.42 2.42 16 27 H 0.06 1.18 7.27 -51.93 -0.38 0.80 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 0.90 7.93 -51.93 -0.41 0.49 16 30 H 0.08 0.98 7.97 -51.93 -0.41 0.57 16 31 H 0.08 0.79 7.65 -51.93 -0.40 0.39 16 32 H 0.08 0.83 7.43 -51.93 -0.39 0.44 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 1.21 7.50 -51.93 -0.39 0.82 16 36 H 0.09 1.64 7.81 -51.93 -0.41 1.23 16 37 H 0.08 1.15 7.50 -51.93 -0.39 0.76 16 38 H 0.07 1.30 6.61 -51.93 -0.34 0.96 16 LS Contribution 307.69 15.07 4.64 4.64 Total: -1.00 -27.65 307.69 -8.43 -36.08 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.08 Total: 8.16 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -2.06 Total: -1.60 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.49 Total: -53.40 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.41 Total: -6.41 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.65 -8.43 -36.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165253570.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.403 kcal (2) G-P(sol) polarization free energy of solvation -27.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds