Wall clock time and date at job start Mon Mar 30 2020 02:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86804 * 120.00111 * 2 1 4 4 H 1.48505 * 109.46927 * 265.37647 * 3 2 1 5 5 H 1.48495 * 109.46768 * 25.37468 * 3 2 1 6 6 H 1.48490 * 109.47065 * 145.37635 * 3 2 1 7 7 C 1.40057 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99969 * 162.94682 * 7 2 1 9 9 C 1.41272 * 120.00037 * 342.94791 * 7 2 1 10 10 C 1.40719 * 120.15776 * 334.73704 * 9 7 2 11 11 N 1.31899 * 119.92874 * 179.97438 * 10 9 7 12 12 C 1.32160 * 120.27381 * 359.97438 * 11 10 9 13 13 C 1.39917 * 120.31936 * 0.02562 * 12 11 10 14 14 N 1.38826 * 119.96735 * 180.26993 * 13 12 11 15 15 C 1.47967 * 111.00744 * 239.71797 * 14 13 12 16 16 C 1.55149 * 104.95896 * 213.91264 * 15 14 13 17 17 C 1.53783 * 101.50481 * 35.68938 * 16 15 14 18 18 C 1.53158 * 111.46845 * 204.61457 * 17 16 15 19 19 C 1.54815 * 103.56056 * 238.49312 * 18 17 16 20 20 O 1.44555 * 104.86569 * 23.72662 * 19 18 17 21 21 C 1.44762 * 105.51511 * 320.38256 * 20 19 18 22 22 C 1.47797 * 110.99888 * 118.93214 * 14 13 12 23 23 N 1.32260 * 120.06423 * 0.02562 * 13 12 11 24 24 H 0.96999 * 120.00211 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.03288 * 359.94877 * 10 9 7 26 26 H 1.07991 * 119.83930 * 180.02562 * 12 11 10 27 27 H 1.09003 * 110.34137 * 332.78735 * 15 14 13 28 28 H 1.09002 * 110.34423 * 95.04390 * 15 14 13 29 29 H 1.08994 * 111.02078 * 277.63504 * 16 15 14 30 30 H 1.09006 * 111.05103 * 153.75464 * 16 15 14 31 31 H 1.09005 * 110.60942 * 357.00894 * 18 17 16 32 32 H 1.09006 * 110.60995 * 119.82102 * 18 17 16 33 33 H 1.09003 * 110.36367 * 142.57237 * 19 18 17 34 34 H 1.08999 * 110.36248 * 264.77370 * 19 18 17 35 35 H 1.08994 * 110.43448 * 280.43905 * 21 20 19 36 36 H 1.08999 * 110.42609 * 157.94663 * 21 20 19 37 37 H 1.09000 * 109.98599 * 243.53507 * 22 14 13 38 38 H 1.09005 * 109.98093 * 4.84145 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.5865 1.9900 -1.3956 5 1 1.3933 2.6789 0.6000 6 1 3.4865 1.4703 0.7954 7 6 2.0075 -1.2129 -0.0005 8 1 3.0519 -1.2334 -0.2748 9 6 1.3477 -2.4096 0.3577 10 6 0.2175 -2.3704 1.1950 11 7 -0.3954 -3.4904 1.5262 12 6 0.0473 -4.6508 1.0744 13 6 1.1701 -4.7026 0.2412 14 7 1.6255 -5.9250 -0.2337 15 6 3.0176 -6.1772 0.1998 16 6 3.6654 -6.9630 -0.9707 17 6 2.9901 -6.3108 -2.1888 18 6 2.9751 -7.2558 -3.3940 19 6 3.7373 -6.4648 -4.4850 20 8 4.5687 -5.5340 -3.7555 21 6 3.7533 -5.0674 -2.6542 22 6 1.5781 -5.9705 -1.7102 23 7 1.7952 -3.5875 -0.0982 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1475 -1.4242 1.5664 26 1 -0.4601 -5.5635 1.3497 27 1 3.5414 -5.2347 0.3593 28 1 3.0284 -6.7765 1.1102 29 1 3.4230 -8.0239 -0.9109 30 1 4.7446 -6.8113 -0.9943 31 1 3.4951 -8.1847 -3.1598 32 1 1.9516 -7.4594 -3.7091 33 1 4.3541 -7.1380 -5.0804 34 1 3.0361 -5.9287 -5.1245 35 1 3.0584 -4.2995 -2.9938 36 1 4.3823 -4.6842 -1.8507 37 1 0.8784 -6.7399 -2.0369 38 1 1.2753 -4.9999 -2.1032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165253570.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:34 Heat of formation + Delta-G solvation = -15.440031 kcal Electronic energy + Delta-G solvation = -21683.791345 eV Core-core repulsion = 18525.107703 eV Total energy + Delta-G solvation = -3158.683642 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.92025 -40.71924 -38.46340 -36.05093 -34.68106 -33.49116 -31.63880 -30.16586 -29.92606 -28.09428 -26.36735 -24.57233 -23.85513 -23.31997 -22.11507 -20.52481 -19.57691 -18.16998 -17.62256 -17.22775 -17.10696 -16.76932 -16.59997 -16.03153 -15.63408 -15.01373 -14.88715 -14.60267 -14.26710 -13.86999 -13.56946 -13.42917 -13.21553 -13.06154 -12.97618 -12.83243 -12.66647 -12.33940 -12.08681 -11.93245 -11.87363 -11.73483 -11.56710 -11.39905 -11.01867 -10.73271 -9.95941 -9.61208 -9.24874 -8.89392 -6.71949 0.47521 0.81934 1.37141 1.46950 1.54170 2.13509 2.55126 2.81086 2.97218 3.38025 3.40119 3.61930 3.73424 4.00761 4.08509 4.12710 4.16348 4.26214 4.34631 4.45155 4.52182 4.61688 4.70652 4.75063 4.82857 4.86211 4.92078 4.93113 4.95358 5.02015 5.04481 5.15405 5.24186 5.29582 5.57937 5.77178 5.81732 6.06462 6.13024 6.46634 6.65726 7.15016 7.63861 8.10676 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018853 B = 0.005907 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.805989 B = 4738.977530 C = 5751.426823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.042 3.958 3 Si 0.998 3.002 4 H -0.260 1.260 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.452 4.452 8 H 0.083 0.917 9 C 0.212 3.788 10 C -0.021 4.021 11 N -0.450 5.450 12 C -0.082 4.082 13 C 0.262 3.738 14 N -0.470 5.470 15 C 0.043 3.957 16 C -0.096 4.096 17 C -0.104 4.104 18 C -0.129 4.129 19 C 0.036 3.964 20 O -0.399 6.399 21 C 0.072 3.928 22 C 0.068 3.932 23 N -0.563 5.563 24 H 0.301 0.699 25 H 0.149 0.851 26 H 0.157 0.843 27 H 0.031 0.969 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.057 0.943 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.774 -9.828 -5.712 12.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.178 4.178 3 Si 0.817 3.183 4 H -0.185 1.185 5 H -0.181 1.181 6 H -0.180 1.180 7 C -0.485 4.485 8 H 0.101 0.899 9 C 0.083 3.917 10 C -0.190 4.190 11 N -0.162 5.162 12 C -0.240 4.240 13 C 0.026 3.974 14 N -0.193 5.193 15 C -0.083 4.083 16 C -0.133 4.133 17 C -0.105 4.105 18 C -0.167 4.167 19 C -0.040 4.040 20 O -0.318 6.318 21 C -0.005 4.005 22 C -0.059 4.059 23 N -0.285 5.285 24 H 0.112 0.888 25 H 0.167 0.833 26 H 0.175 0.825 27 H 0.050 0.950 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.133 0.867 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.418 -10.058 -5.547 12.700 hybrid contribution 0.156 1.676 -0.145 1.689 sum 5.574 -8.382 -5.692 11.564 Atomic orbital electron populations 1.69742 1.09283 1.32129 1.32224 1.26927 0.95575 1.04878 0.90382 0.84973 0.78939 0.74486 0.79935 1.18460 1.18108 1.18018 1.19564 0.98209 0.90338 1.40402 0.89861 1.19505 0.91362 0.91493 0.89330 1.23602 0.98519 0.95923 1.00978 1.67887 1.28830 0.99126 1.20404 1.22841 0.99576 0.96001 1.05620 1.20991 0.93102 0.89377 0.93961 1.61920 1.22824 1.24195 1.10394 1.23199 0.86034 0.99107 0.99981 1.22611 0.99751 1.00330 0.90630 1.22121 0.94774 0.95873 0.97753 1.22843 1.02778 0.98626 0.92435 1.23724 0.94266 0.91323 0.94702 1.89134 1.38318 1.62195 1.42153 1.23101 0.93365 0.95165 0.88854 1.22768 0.96821 1.00559 0.85710 1.68915 1.34539 0.98852 1.26225 0.88783 0.83343 0.82537 0.95039 0.89017 0.87667 0.89688 0.87936 0.88741 0.86714 0.92462 0.94446 0.90568 0.88088 0.95240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.19 10.95 21.84 0.24 -39.95 16 2 C 0.04 1.99 5.15 85.30 0.44 2.43 16 3 Si 1.00 35.97 29.59 68.60 2.03 38.00 16 4 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 5 H -0.26 -8.58 7.11 99.48 0.71 -7.88 16 6 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 7 C -0.45 -24.00 9.29 23.46 0.22 -23.79 16 8 H 0.08 4.36 7.90 -2.91 -0.02 4.34 16 9 C 0.21 11.71 6.40 40.17 0.26 11.97 16 10 C -0.02 -1.17 9.87 85.29 0.84 -0.33 16 11 N -0.45 -23.67 10.47 -192.24 -2.01 -25.68 16 12 C -0.08 -3.91 11.17 85.05 0.95 -2.96 16 13 C 0.26 12.13 5.16 133.36 0.69 12.82 16 14 N -0.47 -17.31 5.17 -692.20 -3.58 -20.89 16 15 C 0.04 1.40 6.55 86.83 0.57 1.97 16 16 C -0.10 -2.32 5.76 31.59 0.18 -2.14 16 17 C -0.10 -2.81 0.80 -51.84 -0.04 -2.85 16 18 C -0.13 -2.49 6.38 31.27 0.20 -2.30 16 19 C 0.04 0.77 7.67 72.60 0.56 1.33 16 20 O -0.40 -12.10 11.66 -148.98 -1.74 -13.84 16 21 C 0.07 2.37 6.67 72.03 0.48 2.85 16 22 C 0.07 2.24 5.94 86.11 0.51 2.75 16 23 N -0.56 -29.01 9.20 -186.01 -1.71 -30.72 16 24 H 0.30 13.23 8.29 -92.71 -0.77 12.46 16 25 H 0.15 8.26 6.18 -2.91 -0.02 8.24 16 26 H 0.16 6.57 8.06 -2.92 -0.02 6.55 16 27 H 0.03 1.21 7.27 -2.39 -0.02 1.19 16 28 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.10 2.00 7.93 -2.39 -0.02 1.98 16 30 H 0.08 1.97 7.97 -2.38 -0.02 1.95 16 31 H 0.10 1.53 7.65 -2.38 -0.02 1.51 16 32 H 0.09 1.58 7.43 -2.38 -0.02 1.56 16 33 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.04 1.43 7.50 -2.39 -0.02 1.41 16 36 H 0.08 2.75 7.81 -2.39 -0.02 2.73 16 37 H 0.10 2.80 7.50 -2.39 -0.02 2.78 16 38 H 0.03 1.18 6.61 -2.38 -0.02 1.17 16 Total: -1.00 -62.69 307.69 0.15 -62.54 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: 1.07 Total: 28.79 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 5.85 Total: 1.75 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -7.06 Total: -117.24 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -1.74 Total: -13.84 kcal Atomic # 14 Polarization: 35.97 SS G_CDS: 2.03 Total: 38.00 kcal Total: -62.69 0.15 -62.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165253570.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.097 kcal (2) G-P(sol) polarization free energy of solvation -62.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds