Wall clock time and date at job start Mon Mar 30 2020 02:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86797 * 120.00139 * 2 1 4 4 H 1.48500 * 109.47321 * 270.00263 * 3 2 1 5 5 H 1.48504 * 109.47103 * 30.00173 * 3 2 1 6 6 H 1.48499 * 109.47253 * 150.00422 * 3 2 1 7 7 C 1.40060 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00023 * 186.29403 * 7 2 1 9 9 C 1.41279 * 119.99847 * 6.29650 * 7 2 1 10 10 C 1.40710 * 120.15703 * 173.77366 * 9 7 2 11 11 N 1.31904 * 119.93380 * 180.02562 * 10 9 7 12 12 C 1.32158 * 120.26841 * 0.02562 * 11 10 9 13 13 C 1.39921 * 120.32040 * 359.97438 * 12 11 10 14 14 N 1.38830 * 119.96973 * 179.97438 * 13 12 11 15 15 C 1.47192 * 111.00042 * 122.76869 * 14 13 12 16 16 C 1.51242 * 108.52316 * 171.45727 * 15 14 13 17 17 C 1.51088 * 112.21007 * 57.42433 * 16 15 14 18 18 H 1.09006 * 109.50307 * 189.16021 * 17 16 15 19 19 C 1.53458 * 112.00004 * 67.51208 * 17 16 15 20 20 O 1.43611 * 106.92253 * 215.29081 * 19 17 16 21 21 C 1.43810 * 109.82236 * 358.55249 * 20 19 17 22 22 C 1.54272 * 113.06030 * 311.53009 * 17 16 15 23 23 H 1.09003 * 112.77508 * 277.96300 * 22 17 16 24 24 C 1.46462 * 110.99837 * 0.02562 * 14 13 12 25 25 N 1.32267 * 120.06365 * 0.26170 * 13 12 11 26 26 H 0.97004 * 119.99924 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.03895 * 0.04373 * 10 9 7 28 28 H 1.08000 * 119.84274 * 180.02562 * 12 11 10 29 29 H 1.09002 * 109.72075 * 290.57720 * 15 14 13 30 30 H 1.08999 * 109.72160 * 51.24395 * 15 14 13 31 31 H 1.09003 * 107.66690 * 297.34262 * 16 15 14 32 32 H 1.08999 * 109.57293 * 178.79636 * 16 15 14 33 33 H 1.08997 * 109.96968 * 334.65893 * 19 17 16 34 34 H 1.09004 * 109.96678 * 95.88524 * 19 17 16 35 35 H 1.09001 * 110.36703 * 266.25960 * 21 20 19 36 36 H 1.09003 * 110.36772 * 143.93801 * 21 20 19 37 37 H 1.08993 * 109.16138 * 307.56612 * 24 14 13 38 38 H 1.09003 * 109.15381 * 66.80289 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4888 2.0464 -1.4001 5 1 1.4388 2.6527 0.7001 6 1 3.5389 1.4401 0.6999 7 6 2.0076 -1.2130 -0.0005 8 1 3.0827 -1.2158 0.1020 9 6 1.3076 -2.4327 -0.1353 10 6 2.0141 -3.6423 -0.2678 11 7 1.3561 -4.7785 -0.3938 12 6 0.0345 -4.7862 -0.3967 13 6 -0.6790 -3.5897 -0.2657 14 7 -2.0672 -3.6061 -0.2702 15 6 -2.6059 -3.0003 0.9584 16 6 -4.1034 -2.8539 0.8052 17 6 -4.7804 -4.1745 0.5214 18 1 -5.8239 -3.9996 0.2593 19 6 -4.7070 -5.1277 1.7217 20 8 -4.5654 -6.4555 1.1931 21 6 -4.5783 -6.4120 -0.2443 22 6 -4.0943 -4.9756 -0.6045 23 1 -4.3970 -4.6491 -1.5994 24 6 -2.5755 -4.9714 -0.4217 25 7 -0.0323 -2.4425 -0.1432 26 1 -0.4850 0.8401 0.0004 27 1 3.0942 -3.6406 -0.2660 28 1 -0.4973 -5.7205 -0.4999 29 1 -2.3962 -3.6474 1.8101 30 1 -2.1501 -2.0230 1.1170 31 1 -4.2859 -2.1733 -0.0265 32 1 -4.5235 -2.4258 1.7153 33 1 -3.8454 -4.8800 2.3417 34 1 -5.6217 -5.0563 2.3102 35 1 -5.5882 -6.5772 -0.6198 36 1 -3.8945 -7.1562 -0.6525 37 1 -2.1094 -5.4320 -1.2926 38 1 -2.3210 -5.5484 0.4674 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165268881.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:58 Heat of formation + Delta-G solvation = 10.952529 kcal Electronic energy + Delta-G solvation = -21821.258435 eV Core-core repulsion = 18663.719260 eV Total energy + Delta-G solvation = -3157.539175 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.68901 -38.99571 -36.70584 -34.09136 -33.31479 -31.94457 -31.21314 -29.31433 -27.80443 -25.87303 -24.86547 -23.48413 -22.45693 -21.20815 -20.94790 -18.90949 -17.60451 -16.61322 -16.19899 -15.74195 -15.64970 -15.09806 -14.95488 -14.83148 -14.27956 -13.82914 -13.40078 -13.02825 -12.90455 -12.67257 -12.35388 -11.96115 -11.80583 -11.55472 -11.39322 -11.27223 -11.07313 -10.78596 -10.54401 -10.47293 -10.24266 -10.17362 -9.84768 -9.54439 -9.47130 -9.38150 -8.44207 -7.52092 -7.09577 -6.49097 -4.72522 2.49074 2.94682 3.01112 3.04012 3.18182 3.82564 3.84096 4.20366 4.45975 4.61790 4.72138 4.93023 5.16748 5.21847 5.33668 5.46045 5.58009 5.60942 5.65387 5.69903 5.78347 5.88953 5.92394 5.99314 6.04736 6.05402 6.25229 6.26170 6.41949 6.46779 6.55229 6.77866 6.94028 6.96493 7.02839 7.46016 7.52177 7.88380 8.05033 8.45514 8.67765 9.28172 9.85580 10.10906 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026272 B = 0.005373 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.507923 B = 5210.307956 C = 6007.577934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.066 3.934 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.411 4.411 8 H 0.091 0.909 9 C 0.226 3.774 10 C -0.085 4.085 11 N -0.416 5.416 12 C -0.161 4.161 13 C 0.289 3.711 14 N -0.465 5.465 15 C 0.066 3.934 16 C -0.106 4.106 17 C -0.115 4.115 18 H 0.078 0.922 19 C 0.052 3.948 20 O -0.385 6.385 21 C 0.053 3.947 22 C -0.111 4.111 23 H 0.103 0.897 24 C 0.061 3.939 25 N -0.464 5.464 26 H 0.276 0.724 27 H 0.132 0.868 28 H 0.127 0.873 29 H 0.029 0.971 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.843 -3.078 1.089 10.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.324 5.324 2 C -0.161 4.161 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.444 4.444 8 H 0.109 0.891 9 C 0.099 3.901 10 C -0.256 4.256 11 N -0.127 5.127 12 C -0.321 4.321 13 C 0.047 3.953 14 N -0.183 5.183 15 C -0.060 4.060 16 C -0.144 4.144 17 C -0.134 4.134 18 H 0.096 0.904 19 C -0.024 4.024 20 O -0.305 6.305 21 C -0.024 4.024 22 C -0.130 4.130 23 H 0.122 0.878 24 C -0.067 4.067 25 N -0.186 5.186 26 H 0.087 0.913 27 H 0.150 0.850 28 H 0.144 0.856 29 H 0.048 0.952 30 H 0.124 0.876 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.252 -2.847 0.824 10.672 hybrid contribution 0.518 0.518 0.299 0.791 sum -9.734 -2.330 1.123 10.071 Atomic orbital electron populations 1.70098 1.07288 1.28269 1.26786 1.26142 0.94991 1.01362 0.93568 0.86247 0.80454 0.80323 0.79421 1.19243 1.20039 1.18347 1.19641 0.94998 0.89188 1.40524 0.89065 1.19240 0.88114 0.93394 0.89363 1.23063 0.99160 0.89480 1.13880 1.67563 1.08524 1.30174 1.06479 1.22633 0.91132 0.96455 1.21900 1.20660 0.88738 0.91624 0.94254 1.58559 1.05557 1.17925 1.36237 1.21882 0.93949 1.01527 0.88638 1.20756 0.95281 0.95869 1.02473 1.21931 1.00324 0.96221 0.94878 0.90353 1.23142 1.01278 0.81826 0.96141 1.88477 1.94970 1.27379 1.19627 1.23618 1.00390 0.96958 0.81402 1.22882 0.95676 0.94609 0.99819 0.87835 1.22125 0.93219 0.89406 1.01950 1.69166 1.07966 1.22154 1.19312 0.91271 0.85047 0.85598 0.95241 0.87592 0.90596 0.91312 0.91109 0.91572 0.92201 0.89483 0.90040 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.71 11.51 55.55 0.64 -17.08 16 2 C 0.07 1.60 5.49 -17.34 -0.10 1.51 16 3 Si 0.91 17.66 29.56 -169.99 -5.03 12.64 16 4 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.41 -10.52 9.15 -37.74 -0.35 -10.86 16 8 H 0.09 2.15 7.85 -52.49 -0.41 1.73 16 9 C 0.23 6.11 6.54 -84.83 -0.55 5.56 16 10 C -0.09 -2.19 10.97 -16.59 -0.18 -2.37 16 11 N -0.42 -10.59 10.47 -12.11 -0.13 -10.72 16 12 C -0.16 -3.86 9.99 -16.78 -0.17 -4.03 16 13 C 0.29 7.01 6.42 -155.00 -1.00 6.02 16 14 N -0.46 -9.36 4.77 -174.21 -0.83 -10.19 16 15 C 0.07 1.21 5.23 -4.55 -0.02 1.19 16 16 C -0.11 -1.48 5.36 -28.58 -0.15 -1.63 16 17 C -0.11 -1.42 2.93 -90.68 -0.27 -1.69 16 18 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 19 C 0.05 0.67 6.80 37.39 0.25 0.92 16 20 O -0.39 -5.46 11.00 -35.23 -0.39 -5.85 16 21 C 0.05 0.63 7.00 38.65 0.27 0.90 16 22 C -0.11 -1.44 3.92 -88.47 -0.35 -1.79 16 23 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 24 C 0.06 1.01 3.10 -4.08 -0.01 1.00 16 25 N -0.46 -12.47 7.38 -10.14 -0.07 -12.55 16 26 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 27 H 0.13 3.05 8.06 -52.48 -0.42 2.62 16 28 H 0.13 2.70 5.76 -52.49 -0.30 2.40 16 29 H 0.03 0.54 6.70 -51.93 -0.35 0.19 16 30 H 0.11 2.26 7.57 -51.93 -0.39 1.87 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.98 6.51 -51.93 -0.34 0.64 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.97 7.98 -51.93 -0.41 0.55 16 37 H 0.08 1.36 6.82 -51.93 -0.35 1.00 16 38 H 0.05 0.83 6.79 -51.93 -0.35 0.48 16 LS Contribution 300.09 15.07 4.52 4.52 Total: -1.00 -29.47 300.09 -8.91 -38.38 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.01 Total: 6.12 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -2.62 Total: -5.28 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.39 Total: -50.53 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.39 Total: -5.85 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.64 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.47 -8.91 -38.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165268881.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.332 kcal (2) G-P(sol) polarization free energy of solvation -29.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds