Wall clock time and date at job start Mon Mar 30 2020 02:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86797 * 120.00139 * 2 1 4 4 H 1.48500 * 109.47321 * 270.00263 * 3 2 1 5 5 H 1.48504 * 109.47103 * 30.00173 * 3 2 1 6 6 H 1.48499 * 109.47253 * 150.00422 * 3 2 1 7 7 C 1.40060 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00023 * 186.29403 * 7 2 1 9 9 C 1.41279 * 119.99847 * 6.29650 * 7 2 1 10 10 C 1.40710 * 120.15703 * 173.77366 * 9 7 2 11 11 N 1.31904 * 119.93380 * 180.02562 * 10 9 7 12 12 C 1.32158 * 120.26841 * 0.02562 * 11 10 9 13 13 C 1.39921 * 120.32040 * 359.97438 * 12 11 10 14 14 N 1.38830 * 119.96973 * 179.97438 * 13 12 11 15 15 C 1.47192 * 111.00042 * 122.76869 * 14 13 12 16 16 C 1.51242 * 108.52316 * 171.45727 * 15 14 13 17 17 C 1.51088 * 112.21007 * 57.42433 * 16 15 14 18 18 H 1.09006 * 109.50307 * 189.16021 * 17 16 15 19 19 C 1.53458 * 112.00004 * 67.51208 * 17 16 15 20 20 O 1.43611 * 106.92253 * 215.29081 * 19 17 16 21 21 C 1.43810 * 109.82236 * 358.55249 * 20 19 17 22 22 C 1.54272 * 113.06030 * 311.53009 * 17 16 15 23 23 H 1.09003 * 112.77508 * 277.96300 * 22 17 16 24 24 C 1.46462 * 110.99837 * 0.02562 * 14 13 12 25 25 N 1.32267 * 120.06365 * 0.26170 * 13 12 11 26 26 H 0.97004 * 119.99924 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.03895 * 0.04373 * 10 9 7 28 28 H 1.08000 * 119.84274 * 180.02562 * 12 11 10 29 29 H 1.09002 * 109.72075 * 290.57720 * 15 14 13 30 30 H 1.08999 * 109.72160 * 51.24395 * 15 14 13 31 31 H 1.09003 * 107.66690 * 297.34262 * 16 15 14 32 32 H 1.08999 * 109.57293 * 178.79636 * 16 15 14 33 33 H 1.08997 * 109.96968 * 334.65893 * 19 17 16 34 34 H 1.09004 * 109.96678 * 95.88524 * 19 17 16 35 35 H 1.09001 * 110.36703 * 266.25960 * 21 20 19 36 36 H 1.09003 * 110.36772 * 143.93801 * 21 20 19 37 37 H 1.08993 * 109.16138 * 307.56612 * 24 14 13 38 38 H 1.09003 * 109.15381 * 66.80289 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4888 2.0464 -1.4001 5 1 1.4388 2.6527 0.7001 6 1 3.5389 1.4401 0.6999 7 6 2.0076 -1.2130 -0.0005 8 1 3.0827 -1.2158 0.1020 9 6 1.3076 -2.4327 -0.1353 10 6 2.0141 -3.6423 -0.2678 11 7 1.3561 -4.7785 -0.3938 12 6 0.0345 -4.7862 -0.3967 13 6 -0.6790 -3.5897 -0.2657 14 7 -2.0672 -3.6061 -0.2702 15 6 -2.6059 -3.0003 0.9584 16 6 -4.1034 -2.8539 0.8052 17 6 -4.7804 -4.1745 0.5214 18 1 -5.8239 -3.9996 0.2593 19 6 -4.7070 -5.1277 1.7217 20 8 -4.5654 -6.4555 1.1931 21 6 -4.5783 -6.4120 -0.2443 22 6 -4.0943 -4.9756 -0.6045 23 1 -4.3970 -4.6491 -1.5994 24 6 -2.5755 -4.9714 -0.4217 25 7 -0.0323 -2.4425 -0.1432 26 1 -0.4850 0.8401 0.0004 27 1 3.0942 -3.6406 -0.2660 28 1 -0.4973 -5.7205 -0.4999 29 1 -2.3962 -3.6474 1.8101 30 1 -2.1501 -2.0230 1.1170 31 1 -4.2859 -2.1733 -0.0265 32 1 -4.5235 -2.4258 1.7153 33 1 -3.8454 -4.8800 2.3417 34 1 -5.6217 -5.0563 2.3102 35 1 -5.5882 -6.5772 -0.6198 36 1 -3.8945 -7.1562 -0.6525 37 1 -2.1094 -5.4320 -1.2926 38 1 -2.3210 -5.5484 0.4674 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165268881.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:58 Heat of formation + Delta-G solvation = -8.796364 kcal Electronic energy + Delta-G solvation = -21822.114811 eV Core-core repulsion = 18663.719260 eV Total energy + Delta-G solvation = -3158.395551 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.98807 -40.66734 -38.14506 -35.93961 -34.71049 -33.62669 -32.57626 -31.06538 -29.03342 -27.68601 -26.22736 -24.93145 -24.00767 -22.76003 -22.41073 -20.14432 -19.41613 -18.16584 -17.55378 -17.33726 -16.89038 -16.75663 -16.50756 -16.22022 -15.70102 -15.24622 -14.92563 -14.44107 -14.23986 -14.07752 -13.67855 -13.35633 -13.31335 -13.02263 -12.99516 -12.83282 -12.58709 -12.17302 -12.03198 -11.83072 -11.65461 -11.53735 -11.41286 -11.31548 -11.10374 -10.46466 -10.26227 -9.43715 -8.88762 -8.34649 -6.68818 0.60402 1.09193 1.41725 1.53624 1.56446 2.19196 2.59553 2.77271 2.98043 3.40788 3.62033 3.75405 3.88988 3.98794 4.09147 4.13310 4.22741 4.24832 4.29163 4.38414 4.45763 4.58420 4.67093 4.68885 4.76494 4.83679 4.89111 4.91303 5.06111 5.07633 5.12299 5.17454 5.23673 5.27745 5.59795 5.89444 6.00717 6.08286 6.18959 6.56416 6.75290 7.32853 7.92541 8.30089 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026272 B = 0.005373 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.507923 B = 5210.307956 C = 6007.577934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.022 3.978 3 Si 0.994 3.006 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.251 1.251 7 C -0.433 4.433 8 H 0.104 0.896 9 C 0.194 3.806 10 C -0.108 4.108 11 N -0.426 5.426 12 C -0.172 4.172 13 C 0.283 3.717 14 N -0.470 5.470 15 C 0.072 3.928 16 C -0.096 4.096 17 C -0.109 4.109 18 H 0.112 0.888 19 C 0.052 3.948 20 O -0.407 6.407 21 C 0.056 3.944 22 C -0.108 4.108 23 H 0.119 0.881 24 C 0.063 3.937 25 N -0.492 5.492 26 H 0.284 0.716 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.023 0.977 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.504 -2.534 0.924 11.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.202 4.202 3 Si 0.814 3.186 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.464 4.464 8 H 0.122 0.878 9 C 0.067 3.933 10 C -0.278 4.278 11 N -0.138 5.138 12 C -0.333 4.333 13 C 0.040 3.960 14 N -0.188 5.188 15 C -0.054 4.054 16 C -0.134 4.134 17 C -0.128 4.128 18 H 0.130 0.870 19 C -0.024 4.024 20 O -0.327 6.327 21 C -0.021 4.021 22 C -0.126 4.126 23 H 0.137 0.863 24 C -0.065 4.065 25 N -0.215 5.215 26 H 0.095 0.905 27 H 0.164 0.836 28 H 0.166 0.834 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.922 -2.331 0.662 12.166 hybrid contribution 0.988 0.302 0.353 1.092 sum -10.934 -2.030 1.015 11.167 Atomic orbital electron populations 1.70188 1.09009 1.29825 1.26544 1.27113 0.95811 1.04770 0.92491 0.85018 0.79089 0.75027 0.79501 1.18878 1.19091 1.17459 1.20088 0.95846 0.89789 1.40717 0.87845 1.19710 0.88763 0.94527 0.90255 1.23276 0.99958 0.89400 1.15143 1.67562 1.09273 1.30237 1.06679 1.23027 0.90991 0.97486 1.21803 1.21098 0.90693 0.91120 0.93055 1.58649 1.03306 1.20110 1.36686 1.21802 0.96795 0.99123 0.87729 1.20693 0.91914 0.97223 1.03530 1.21941 1.01674 0.94768 0.94409 0.87036 1.23186 1.01613 0.81394 0.96223 1.88458 1.95197 1.28082 1.20933 1.23739 1.02088 0.95883 0.80356 1.22912 0.92575 0.96163 1.00980 0.86341 1.22221 0.96025 0.87139 1.01104 1.69175 1.08213 1.23467 1.20624 0.90472 0.83557 0.83414 0.95902 0.91318 0.90994 0.88982 0.93094 0.89133 0.89279 0.89156 0.90445 0.94627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.69 11.51 21.84 0.25 -37.43 16 2 C 0.02 1.09 5.49 85.30 0.47 1.55 16 3 Si 0.99 35.85 29.56 68.60 2.03 37.88 16 4 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 5 H -0.27 -9.15 7.11 99.48 0.71 -8.44 16 6 H -0.25 -8.65 7.11 99.48 0.71 -7.94 16 7 C -0.43 -22.60 9.15 23.46 0.21 -22.38 16 8 H 0.10 4.93 7.85 -2.91 -0.02 4.90 16 9 C 0.19 10.88 6.54 40.17 0.26 11.14 16 10 C -0.11 -5.73 10.97 85.29 0.94 -4.80 16 11 N -0.43 -22.26 10.47 -192.23 -2.01 -24.27 16 12 C -0.17 -8.49 9.99 85.05 0.85 -7.64 16 13 C 0.28 14.18 6.42 133.35 0.86 15.03 16 14 N -0.47 -19.18 4.77 -705.08 -3.36 -22.54 16 15 C 0.07 2.67 5.23 85.67 0.45 3.12 16 16 C -0.10 -2.53 5.36 29.40 0.16 -2.37 16 17 C -0.11 -2.38 2.93 -10.83 -0.03 -2.41 16 18 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 19 C 0.05 1.20 6.80 72.14 0.49 1.69 16 20 O -0.41 -10.61 11.00 -148.98 -1.64 -12.25 16 21 C 0.06 1.15 7.00 72.95 0.51 1.66 16 22 C -0.11 -2.54 3.92 -9.40 -0.04 -2.57 16 23 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 24 C 0.06 2.04 3.10 86.38 0.27 2.31 16 25 N -0.49 -27.47 7.38 -186.00 -1.37 -28.84 16 26 H 0.28 13.08 8.29 -92.71 -0.77 12.31 16 27 H 0.15 7.00 8.06 -2.91 -0.02 6.97 16 28 H 0.15 6.43 5.76 -2.91 -0.02 6.41 16 29 H 0.02 0.87 6.70 -2.39 -0.02 0.85 16 30 H 0.07 3.07 7.57 -2.39 -0.02 3.05 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.05 1.36 6.51 -2.39 -0.02 1.35 16 34 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.09 1.80 7.98 -2.39 -0.02 1.78 16 37 H 0.08 2.55 6.82 -2.39 -0.02 2.54 16 38 H 0.04 1.25 6.79 -2.39 -0.02 1.23 16 Total: -1.00 -65.88 300.09 0.36 -65.52 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 1.07 Total: 27.61 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 5.39 Total: -5.67 kcal Atomic # 7 Polarization: -106.60 SS G_CDS: -6.50 Total: -113.09 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -1.64 Total: -12.25 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 2.03 Total: 37.88 kcal Total: -65.88 0.36 -65.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165268881.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.723 kcal (2) G-P(sol) polarization free energy of solvation -65.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds