Wall clock time and date at job start Mon Mar 30 2020 02:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86800 * 119.99698 * 2 1 4 4 H 1.48502 * 109.47296 * 270.00142 * 3 2 1 5 5 H 1.48491 * 109.47330 * 30.00466 * 3 2 1 6 6 H 1.48503 * 109.46870 * 150.00321 * 3 2 1 7 7 C 1.40052 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99524 * 187.59118 * 7 2 1 9 9 C 1.41267 * 120.00450 * 7.58565 * 7 2 1 10 10 C 1.40719 * 120.15882 * 186.83992 * 9 7 2 11 11 N 1.31901 * 119.93202 * 179.97438 * 10 9 7 12 12 C 1.32161 * 120.27069 * 359.73948 * 11 10 9 13 13 C 1.39926 * 120.31843 * 0.52328 * 12 11 10 14 14 N 1.38830 * 119.96734 * 179.75553 * 13 12 11 15 15 C 1.48059 * 110.99731 * 302.28047 * 14 13 12 16 16 C 1.53440 * 86.15041 * 222.80835 * 15 14 13 17 17 C 1.48296 * 111.07568 * 202.89440 * 14 13 12 18 18 C 1.52767 * 113.63543 * 268.89355 * 16 15 14 19 19 C 1.53359 * 108.76453 * 281.67121 * 18 16 15 20 20 C 1.53086 * 109.06639 * 305.25569 * 19 18 16 21 21 O 1.42867 * 109.68208 * 59.47707 * 20 19 18 22 22 C 1.43097 * 114.05387 * 297.03805 * 21 20 19 23 23 N 1.32263 * 120.05981 * 359.47285 * 13 12 11 24 24 H 0.97002 * 120.00425 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.03699 * 359.96524 * 10 9 7 26 26 H 1.07997 * 119.84552 * 180.25470 * 12 11 10 27 27 H 1.08993 * 113.78648 * 108.46922 * 15 14 13 28 28 H 1.09000 * 113.78356 * 337.13682 * 15 14 13 29 29 H 1.09002 * 113.67812 * 22.84258 * 17 14 13 30 30 H 1.08996 * 113.95532 * 251.44670 * 17 14 13 31 31 H 1.08998 * 109.59175 * 41.45714 * 18 16 15 32 32 H 1.09004 * 109.58665 * 161.89129 * 18 16 15 33 33 H 1.08996 * 109.54041 * 185.38529 * 19 18 16 34 34 H 1.09002 * 109.53905 * 65.13218 * 19 18 16 35 35 H 1.09000 * 109.43718 * 299.40956 * 20 19 18 36 36 H 1.09006 * 109.43488 * 179.53836 * 20 19 18 37 37 H 1.08999 * 109.52454 * 298.75283 * 22 21 20 38 38 H 1.08997 * 109.57458 * 178.59113 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.4887 2.0465 -1.4001 5 1 1.4387 2.6526 0.7001 6 1 3.5388 1.4402 0.7000 7 6 2.0075 -1.2129 -0.0005 8 1 3.0804 -1.2170 0.1230 9 6 1.3105 -2.4309 -0.1626 10 6 1.9867 -3.6568 -0.0206 11 7 1.3314 -4.7914 -0.1723 12 6 0.0398 -4.7824 -0.4524 13 6 -0.6422 -3.5698 -0.6014 14 7 -1.9979 -3.5689 -0.9007 15 6 -2.2643 -4.3053 -2.1572 16 6 -3.2229 -3.1586 -2.5046 17 6 -2.4021 -2.2931 -1.5396 18 6 -4.6589 -3.3994 -2.0423 19 6 -5.3388 -4.3609 -3.0248 20 6 -5.2198 -3.7944 -4.4421 21 8 -3.8414 -3.6400 -4.7844 22 6 -3.1367 -2.7063 -3.9602 23 7 0.0022 -2.4245 -0.4519 24 1 -0.4851 0.8400 0.0004 25 1 3.0413 -3.6686 0.2123 26 1 -0.4909 -5.7155 -0.5712 27 1 -2.7613 -5.2638 -2.0081 28 1 -1.4009 -4.3721 -2.8191 29 1 -1.5785 -1.7625 -2.0172 30 1 -3.0085 -1.6510 -0.9009 31 1 -4.6529 -3.8397 -1.0453 32 1 -5.2001 -2.4534 -2.0232 33 1 -6.3912 -4.4669 -2.7619 34 1 -4.8504 -5.3343 -2.9792 35 1 -5.7158 -2.8248 -4.4879 36 1 -5.6942 -4.4775 -5.1467 37 1 -3.5865 -1.7187 -4.0620 38 1 -2.0918 -2.6642 -4.2673 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165308639.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:32 Heat of formation + Delta-G solvation = 32.479444 kcal Electronic energy + Delta-G solvation = -21665.279039 eV Core-core repulsion = 18508.673342 eV Total energy + Delta-G solvation = -3156.605698 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.88536 -38.87557 -37.39929 -34.08707 -33.21557 -31.98493 -31.00337 -28.91827 -26.55529 -25.48638 -25.23672 -24.70303 -22.29558 -21.64670 -20.48747 -18.26612 -17.71591 -16.60109 -16.01925 -15.70164 -15.48235 -15.25400 -15.04110 -14.93694 -14.08720 -13.83394 -13.47969 -13.13036 -12.70831 -12.57452 -12.36422 -11.85902 -11.66001 -11.53409 -11.45815 -11.30680 -11.09474 -10.78735 -10.72618 -10.50042 -10.35529 -9.97846 -9.82680 -9.68283 -9.40292 -9.28570 -8.57707 -7.49537 -7.33252 -6.61856 -4.73482 2.44882 2.89555 2.98787 3.01602 3.15411 3.79636 3.86742 4.33267 4.58706 4.62286 4.78945 4.94293 5.03522 5.15337 5.38290 5.39679 5.59735 5.63268 5.68115 5.74586 5.83398 5.88577 5.91124 5.96630 5.99785 6.14139 6.24656 6.28613 6.36050 6.46682 6.61819 6.74352 6.82668 6.96665 7.19957 7.23076 7.47581 7.83495 8.03201 8.41454 8.65257 9.24079 9.77767 10.06353 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020850 B = 0.005599 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.589358 B = 4999.995660 C = 5881.244675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.070 3.930 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.415 4.415 8 H 0.091 0.909 9 C 0.227 3.773 10 C -0.084 4.084 11 N -0.418 5.418 12 C -0.125 4.125 13 C 0.253 3.747 14 N -0.428 5.428 15 C 0.040 3.960 16 C -0.135 4.135 17 C 0.056 3.944 18 C -0.090 4.090 19 C -0.154 4.154 20 C 0.061 3.939 21 O -0.382 6.382 22 C 0.078 3.922 23 N -0.478 5.478 24 H 0.277 0.723 25 H 0.132 0.868 26 H 0.124 0.876 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.553 -0.644 -6.496 11.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.157 4.157 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.447 4.447 8 H 0.109 0.891 9 C 0.100 3.900 10 C -0.254 4.254 11 N -0.130 5.130 12 C -0.285 4.285 13 C 0.012 3.988 14 N -0.146 5.146 15 C -0.088 4.088 16 C -0.136 4.136 17 C -0.073 4.073 18 C -0.128 4.128 19 C -0.192 4.192 20 C -0.016 4.016 21 O -0.300 6.300 22 C 0.001 3.999 23 N -0.199 5.199 24 H 0.088 0.912 25 H 0.150 0.850 26 H 0.142 0.858 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.992 -0.833 -6.016 11.693 hybrid contribution 0.679 1.092 -0.131 1.293 sum -9.314 0.259 -6.147 11.162 Atomic orbital electron populations 1.70030 1.07403 1.28453 1.27247 1.26105 0.94944 1.01362 0.93254 0.86249 0.80522 0.80274 0.79427 1.19206 1.20039 1.18324 1.19626 0.95270 0.89311 1.40461 0.89091 1.19204 0.88303 0.93410 0.89086 1.23058 1.00011 0.89000 1.13292 1.67598 1.08044 1.30850 1.06480 1.22066 0.91705 0.95886 1.18865 1.21353 0.90284 0.92140 0.95042 1.65654 1.13608 1.08853 1.26519 1.23758 0.97599 0.97490 0.89933 1.22795 0.96344 0.98444 0.96015 1.23596 0.97732 0.92193 0.93745 1.21272 0.92757 0.99299 0.99450 1.22202 1.00961 1.00294 0.95750 1.22519 0.83184 0.99978 0.95960 1.87954 1.22090 1.63710 1.56290 1.22552 0.97324 0.91502 0.88541 1.69251 1.08425 1.23425 1.18830 0.91188 0.85003 0.85838 0.89602 0.91019 0.88897 0.89770 0.90262 0.91751 0.91099 0.90960 0.93519 0.89356 0.92911 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.60 11.59 55.55 0.64 -16.95 16 2 C 0.07 1.67 5.47 -17.34 -0.09 1.58 16 3 Si 0.91 17.53 29.57 -169.99 -5.03 12.50 16 4 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.41 -10.54 9.15 -37.75 -0.35 -10.88 16 8 H 0.09 2.14 7.86 -52.49 -0.41 1.72 16 9 C 0.23 6.10 6.52 -84.84 -0.55 5.54 16 10 C -0.08 -2.15 10.97 -16.59 -0.18 -2.33 16 11 N -0.42 -10.68 10.47 -12.11 -0.13 -10.81 16 12 C -0.12 -3.04 10.50 -16.78 -0.18 -3.21 16 13 C 0.25 6.15 6.11 -155.01 -0.95 5.21 16 14 N -0.43 -8.72 6.17 -177.54 -1.09 -9.82 16 15 C 0.04 0.68 6.34 -2.96 -0.02 0.66 16 16 C -0.13 -2.01 0.88 -154.41 -0.14 -2.14 16 17 C 0.06 1.04 6.62 -2.84 -0.02 1.02 16 18 C -0.09 -1.14 5.14 -26.66 -0.14 -1.28 16 19 C -0.15 -1.63 6.09 -26.50 -0.16 -1.80 16 20 C 0.06 0.65 6.77 37.20 0.25 0.90 16 21 O -0.38 -5.28 10.78 -35.23 -0.38 -5.66 16 22 C 0.08 1.08 6.03 36.98 0.22 1.31 16 23 N -0.48 -12.62 6.51 -10.14 -0.07 -12.69 16 24 H 0.28 6.20 8.29 -40.82 -0.34 5.86 16 25 H 0.13 3.06 8.06 -52.48 -0.42 2.63 16 26 H 0.12 2.74 7.93 -52.49 -0.42 2.32 16 27 H 0.09 1.33 7.73 -51.93 -0.40 0.93 16 28 H 0.07 1.31 7.75 -51.93 -0.40 0.90 16 29 H 0.09 1.97 7.17 -51.93 -0.37 1.60 16 30 H 0.08 1.57 8.09 -51.93 -0.42 1.15 16 31 H 0.08 1.08 8.01 -51.93 -0.42 0.66 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.81 7.78 -51.93 -0.40 0.41 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.38 8.04 -51.93 -0.42 0.96 16 LS Contribution 310.41 15.07 4.68 4.68 Total: -1.00 -28.85 310.41 -9.00 -37.85 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.33 Total: 6.32 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -2.30 Total: -5.43 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.64 Total: -50.27 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.38 Total: -5.66 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.50 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.85 -9.00 -37.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165308639.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.331 kcal (2) G-P(sol) polarization free energy of solvation -28.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds