Wall clock time and date at job start Mon Mar 30 2020 02:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86800 * 119.99698 * 2 1 4 4 H 1.48502 * 109.47296 * 270.00142 * 3 2 1 5 5 H 1.48491 * 109.47330 * 30.00466 * 3 2 1 6 6 H 1.48503 * 109.46870 * 150.00321 * 3 2 1 7 7 C 1.40052 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99524 * 187.59118 * 7 2 1 9 9 C 1.41267 * 120.00450 * 7.58565 * 7 2 1 10 10 C 1.40719 * 120.15882 * 186.83992 * 9 7 2 11 11 N 1.31901 * 119.93202 * 179.97438 * 10 9 7 12 12 C 1.32161 * 120.27069 * 359.73948 * 11 10 9 13 13 C 1.39926 * 120.31843 * 0.52328 * 12 11 10 14 14 N 1.38830 * 119.96734 * 179.75553 * 13 12 11 15 15 C 1.48059 * 110.99731 * 302.28047 * 14 13 12 16 16 C 1.53440 * 86.15041 * 222.80835 * 15 14 13 17 17 C 1.48296 * 111.07568 * 202.89440 * 14 13 12 18 18 C 1.52767 * 113.63543 * 268.89355 * 16 15 14 19 19 C 1.53359 * 108.76453 * 281.67121 * 18 16 15 20 20 C 1.53086 * 109.06639 * 305.25569 * 19 18 16 21 21 O 1.42867 * 109.68208 * 59.47707 * 20 19 18 22 22 C 1.43097 * 114.05387 * 297.03805 * 21 20 19 23 23 N 1.32263 * 120.05981 * 359.47285 * 13 12 11 24 24 H 0.97002 * 120.00425 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.03699 * 359.96524 * 10 9 7 26 26 H 1.07997 * 119.84552 * 180.25470 * 12 11 10 27 27 H 1.08993 * 113.78648 * 108.46922 * 15 14 13 28 28 H 1.09000 * 113.78356 * 337.13682 * 15 14 13 29 29 H 1.09002 * 113.67812 * 22.84258 * 17 14 13 30 30 H 1.08996 * 113.95532 * 251.44670 * 17 14 13 31 31 H 1.08998 * 109.59175 * 41.45714 * 18 16 15 32 32 H 1.09004 * 109.58665 * 161.89129 * 18 16 15 33 33 H 1.08996 * 109.54041 * 185.38529 * 19 18 16 34 34 H 1.09002 * 109.53905 * 65.13218 * 19 18 16 35 35 H 1.09000 * 109.43718 * 299.40956 * 20 19 18 36 36 H 1.09006 * 109.43488 * 179.53836 * 20 19 18 37 37 H 1.08999 * 109.52454 * 298.75283 * 22 21 20 38 38 H 1.08997 * 109.57458 * 178.59113 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.4887 2.0465 -1.4001 5 1 1.4387 2.6526 0.7001 6 1 3.5388 1.4402 0.7000 7 6 2.0075 -1.2129 -0.0005 8 1 3.0804 -1.2170 0.1230 9 6 1.3105 -2.4309 -0.1626 10 6 1.9867 -3.6568 -0.0206 11 7 1.3314 -4.7914 -0.1723 12 6 0.0398 -4.7824 -0.4524 13 6 -0.6422 -3.5698 -0.6014 14 7 -1.9979 -3.5689 -0.9007 15 6 -2.2643 -4.3053 -2.1572 16 6 -3.2229 -3.1586 -2.5046 17 6 -2.4021 -2.2931 -1.5396 18 6 -4.6589 -3.3994 -2.0423 19 6 -5.3388 -4.3609 -3.0248 20 6 -5.2198 -3.7944 -4.4421 21 8 -3.8414 -3.6400 -4.7844 22 6 -3.1367 -2.7063 -3.9602 23 7 0.0022 -2.4245 -0.4519 24 1 -0.4851 0.8400 0.0004 25 1 3.0413 -3.6686 0.2123 26 1 -0.4909 -5.7155 -0.5712 27 1 -2.7613 -5.2638 -2.0081 28 1 -1.4009 -4.3721 -2.8191 29 1 -1.5785 -1.7625 -2.0172 30 1 -3.0085 -1.6510 -0.9009 31 1 -4.6529 -3.8397 -1.0453 32 1 -5.2001 -2.4534 -2.0232 33 1 -6.3912 -4.4669 -2.7619 34 1 -4.8504 -5.3343 -2.9792 35 1 -5.7158 -2.8248 -4.4879 36 1 -5.6942 -4.4775 -5.1467 37 1 -3.5865 -1.7187 -4.0620 38 1 -2.0918 -2.6642 -4.2673 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165308639.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:31 Heat of formation + Delta-G solvation = 13.296250 kcal Electronic energy + Delta-G solvation = -21666.110885 eV Core-core repulsion = 18508.673342 eV Total energy + Delta-G solvation = -3157.437543 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.34028 -40.52352 -38.72329 -35.95879 -34.53628 -33.54898 -32.57474 -30.49569 -28.29045 -27.08131 -26.36791 -26.09951 -24.02886 -23.03972 -22.03831 -19.57738 -19.46329 -18.22809 -17.39517 -17.12750 -16.98489 -16.82587 -16.54027 -16.36711 -15.29598 -15.07358 -15.04517 -14.71969 -14.18745 -13.87082 -13.58006 -13.43207 -13.39489 -13.08830 -12.93159 -12.81014 -12.47077 -12.10304 -12.04282 -11.85349 -11.77270 -11.55325 -11.51847 -11.11077 -11.06890 -10.57820 -10.25482 -9.40916 -9.15532 -8.46162 -6.68535 0.56803 1.05260 1.40736 1.52194 1.55015 2.17596 2.66459 2.81896 2.89165 3.37624 3.58017 3.77080 3.89385 3.98490 4.08827 4.09612 4.16020 4.23848 4.41727 4.46655 4.50846 4.55630 4.67234 4.71163 4.73125 4.80393 4.92670 4.97546 5.01710 5.04784 5.14471 5.18577 5.36039 5.37914 5.39005 5.63223 6.00779 6.15094 6.25215 6.52473 6.73523 7.29189 7.84373 8.26854 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020850 B = 0.005599 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.589358 B = 4999.995660 C = 5881.244675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.027 3.973 3 Si 0.993 3.007 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.435 4.435 8 H 0.102 0.898 9 C 0.195 3.805 10 C -0.107 4.107 11 N -0.427 5.427 12 C -0.140 4.140 13 C 0.250 3.750 14 N -0.435 5.435 15 C 0.042 3.958 16 C -0.111 4.111 17 C 0.056 3.944 18 C -0.089 4.089 19 C -0.147 4.147 20 C 0.053 3.947 21 O -0.397 6.397 22 C 0.083 3.917 23 N -0.500 5.500 24 H 0.286 0.714 25 H 0.147 0.853 26 H 0.143 0.857 27 H 0.104 0.896 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.004 0.185 -7.208 13.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.197 4.197 3 Si 0.813 3.187 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.176 1.176 7 C -0.466 4.466 8 H 0.120 0.880 9 C 0.069 3.931 10 C -0.276 4.276 11 N -0.139 5.139 12 C -0.301 4.301 13 C 0.008 3.992 14 N -0.153 5.153 15 C -0.085 4.085 16 C -0.112 4.112 17 C -0.072 4.072 18 C -0.126 4.126 19 C -0.185 4.185 20 C -0.023 4.023 21 O -0.316 6.316 22 C 0.006 3.994 23 N -0.222 5.222 24 H 0.097 0.903 25 H 0.164 0.836 26 H 0.160 0.840 27 H 0.122 0.878 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.128 0.872 37 H 0.086 0.914 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.452 -0.031 -6.732 13.284 hybrid contribution 1.033 0.805 0.090 1.313 sum -10.420 0.775 -6.642 12.381 Atomic orbital electron populations 1.70100 1.09037 1.30062 1.26693 1.27048 0.95766 1.04665 0.92239 0.85032 0.79097 0.75063 0.79555 1.18725 1.19153 1.17603 1.20064 0.96073 0.89935 1.40562 0.87959 1.19670 0.89012 0.94496 0.89966 1.23266 1.00815 0.88914 1.14604 1.67582 1.08688 1.30959 1.06670 1.22396 0.91679 0.96804 1.19177 1.21740 0.91728 0.91699 0.94023 1.65661 1.11117 1.10396 1.28172 1.23811 0.97715 0.98967 0.88016 1.22682 0.97048 0.95428 0.96015 1.23469 0.97445 0.91788 0.94489 1.21298 0.91141 1.00686 0.99497 1.22180 1.02238 0.99113 0.94966 1.22797 0.81646 1.01396 0.96492 1.87948 1.23872 1.63565 1.56217 1.22411 0.97056 0.92382 0.87600 1.69279 1.08601 1.24445 1.19872 0.90296 0.83570 0.84012 0.87762 0.92614 0.91849 0.90129 0.91268 0.90325 0.88371 0.91571 0.92110 0.87222 0.91393 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -36.98 11.59 21.84 0.25 -36.73 16 2 C 0.03 1.30 5.47 85.30 0.47 1.76 16 3 Si 0.99 35.40 29.57 68.60 2.03 37.43 16 4 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 5 H -0.27 -9.09 7.11 99.48 0.71 -8.39 16 6 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 7 C -0.44 -22.47 9.15 23.46 0.21 -22.26 16 8 H 0.10 4.85 7.86 -2.91 -0.02 4.82 16 9 C 0.20 10.81 6.52 40.16 0.26 11.07 16 10 C -0.11 -5.65 10.97 85.29 0.94 -4.71 16 11 N -0.43 -22.34 10.47 -192.23 -2.01 -24.36 16 12 C -0.14 -6.95 10.50 85.05 0.89 -6.05 16 13 C 0.25 12.50 6.11 133.36 0.81 13.31 16 14 N -0.43 -17.97 6.17 -715.60 -4.41 -22.38 16 15 C 0.04 1.42 6.34 86.22 0.55 1.97 16 16 C -0.11 -3.20 0.88 -52.06 -0.05 -3.24 16 17 C 0.06 2.14 6.62 86.17 0.57 2.71 16 18 C -0.09 -2.04 5.14 30.64 0.16 -1.88 16 19 C -0.15 -2.63 6.09 30.74 0.19 -2.45 16 20 C 0.05 0.95 6.77 72.01 0.49 1.44 16 21 O -0.40 -10.16 10.78 -148.98 -1.61 -11.76 16 22 C 0.08 2.22 6.03 71.87 0.43 2.65 16 23 N -0.50 -27.30 6.51 -186.01 -1.21 -28.51 16 24 H 0.29 12.83 8.29 -92.71 -0.77 12.06 16 25 H 0.15 6.98 8.06 -2.91 -0.02 6.96 16 26 H 0.14 6.33 7.93 -2.91 -0.02 6.30 16 27 H 0.10 3.12 7.73 -2.39 -0.02 3.10 16 28 H 0.06 2.07 7.75 -2.39 -0.02 2.05 16 29 H 0.06 2.80 7.17 -2.39 -0.02 2.79 16 30 H 0.08 3.06 8.09 -2.39 -0.02 3.04 16 31 H 0.07 1.75 8.01 -2.39 -0.02 1.73 16 32 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.29 7.78 -2.39 -0.02 1.27 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 2.34 8.04 -2.39 -0.02 2.33 16 Total: -1.00 -63.44 310.41 0.02 -63.42 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 1.05 Total: 28.58 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 5.92 Total: -5.69 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -7.38 Total: -111.98 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -1.61 Total: -11.76 kcal Atomic # 14 Polarization: 35.40 SS G_CDS: 2.03 Total: 37.43 kcal Total: -63.44 0.02 -63.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165308639.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.713 kcal (2) G-P(sol) polarization free energy of solvation -63.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds