Wall clock time and date at job start Mon Mar 30 2020 02:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86793 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47682 * 270.00442 * 3 2 1 5 5 H 1.48500 * 109.47327 * 30.00428 * 3 2 1 6 6 H 1.48497 * 109.47365 * 150.00468 * 3 2 1 7 7 C 1.40055 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00720 * 187.23849 * 7 2 1 9 9 C 1.41280 * 119.99723 * 7.23729 * 7 2 1 10 10 C 1.40717 * 120.15645 * 187.34835 * 9 7 2 11 11 N 1.31910 * 119.92658 * 179.70344 * 10 9 7 12 12 C 1.32158 * 120.27267 * 0.54477 * 11 10 9 13 13 C 1.39918 * 120.32022 * 359.44886 * 12 11 10 14 14 N 1.38830 * 119.96896 * 180.25219 * 13 12 11 15 15 C 1.47002 * 110.99936 * 135.24034 * 14 13 12 16 16 C 1.52999 * 109.53105 * 183.21766 * 15 14 13 17 17 C 1.53101 * 109.51104 * 299.02754 * 16 15 14 18 18 C 1.53277 * 109.08673 * 59.40003 * 17 16 15 19 19 C 1.46409 * 111.00194 * 259.21426 * 14 13 12 20 20 C 1.53553 * 113.72955 * 46.71730 * 19 14 13 21 21 O 1.44271 * 85.37579 * 223.37025 * 20 19 14 22 22 C 1.44268 * 93.41232 * 23.86982 * 21 20 19 23 23 N 1.32264 * 120.06180 * 0.27611 * 13 12 11 24 24 H 0.97010 * 119.99820 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.03608 * 359.96741 * 10 9 7 26 26 H 1.07990 * 119.83655 * 179.72397 * 12 11 10 27 27 H 1.08995 * 109.46388 * 303.24456 * 15 14 13 28 28 H 1.09006 * 109.45475 * 63.20592 * 15 14 13 29 29 H 1.08998 * 109.46525 * 179.01506 * 16 15 14 30 30 H 1.08995 * 109.45528 * 59.03646 * 16 15 14 31 31 H 1.08998 * 109.53638 * 299.52316 * 17 16 15 32 32 H 1.08994 * 109.60079 * 179.32135 * 17 16 15 33 33 H 1.09000 * 109.53820 * 184.72903 * 18 17 16 34 34 H 1.08996 * 109.54369 * 64.47471 * 18 17 16 35 35 H 1.09000 * 113.89361 * 337.47978 * 20 19 14 36 36 H 1.09005 * 113.88541 * 109.26021 * 20 19 14 37 37 H 1.08997 * 113.88698 * 222.02729 * 22 21 20 38 38 H 1.08998 * 114.01304 * 90.25976 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4888 2.0465 -1.4000 5 1 1.4389 2.6526 0.7001 6 1 3.5389 1.4401 0.6999 7 6 2.0076 -1.2129 -0.0005 8 1 3.0811 -1.2168 0.1173 9 6 1.3096 -2.4315 -0.1552 10 6 1.9842 -3.6569 -0.0025 11 7 1.3268 -4.7919 -0.1422 12 6 0.0383 -4.7837 -0.4358 13 6 -0.6434 -3.5716 -0.5899 14 7 -1.9981 -3.5715 -0.8932 15 6 -2.7230 -2.5957 -0.0665 16 6 -4.2201 -2.6798 -0.3703 17 6 -4.4621 -2.3468 -1.8449 18 6 -3.6900 -3.3432 -2.7170 19 6 -2.2168 -3.3174 -2.3184 20 6 -1.3155 -4.1514 -3.2402 21 8 -1.1412 -2.9274 -3.9837 22 6 -1.4578 -2.0927 -2.8503 23 7 0.0019 -2.4258 -0.4475 24 1 -0.4850 0.8401 0.0004 25 1 3.0382 -3.6681 0.2330 26 1 -0.4920 -5.7171 -0.5529 27 1 -2.5533 -2.8156 0.9875 28 1 -2.3628 -1.5915 -0.2904 29 1 -4.7583 -1.9682 0.2558 30 1 -4.5766 -3.6886 -0.1625 31 1 -4.1137 -1.3350 -2.0521 32 1 -5.5270 -2.4181 -2.0659 33 1 -3.7888 -3.0627 -3.7657 34 1 -4.0906 -4.3457 -2.5672 35 1 -0.4047 -4.5100 -2.7606 36 1 -1.8454 -4.9298 -3.7893 37 1 -2.1002 -1.2459 -3.0916 38 1 -0.5924 -1.8143 -2.2490 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166691952.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:42 Heat of formation + Delta-G solvation = 43.785064 kcal Electronic energy + Delta-G solvation = -22712.667715 eV Core-core repulsion = 19556.552266 eV Total energy + Delta-G solvation = -3156.115449 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.10937 -38.75259 -36.70736 -34.18996 -33.63443 -31.48161 -30.30925 -29.20316 -26.48105 -25.90497 -25.40063 -23.82194 -22.23398 -21.44529 -20.62057 -18.12803 -17.64022 -16.64867 -15.90471 -15.70027 -15.34166 -15.11638 -15.01070 -14.85578 -13.71964 -13.55881 -13.21897 -12.94092 -12.77881 -12.55543 -12.33485 -11.73972 -11.64335 -11.54854 -11.39067 -11.16338 -10.90818 -10.61174 -10.53593 -10.48948 -10.17485 -10.01245 -9.87263 -9.63025 -9.30921 -8.89803 -8.17493 -7.67487 -7.42142 -6.67162 -4.78332 2.34182 2.80696 2.96519 2.98772 3.09585 3.76049 4.13496 4.33343 4.50000 4.77713 4.99094 5.18670 5.35889 5.44455 5.54335 5.66748 5.83134 5.89110 5.91418 5.97965 6.00769 6.07589 6.13663 6.20934 6.23941 6.29337 6.41104 6.46146 6.50404 6.62857 6.74447 6.80978 6.86318 6.91419 7.12410 7.42756 7.54410 7.80411 8.01893 8.36083 8.61991 9.13816 9.66651 9.99257 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017533 B = 0.008035 C = 0.006903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.566585 B = 3484.097639 C = 4055.021751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.071 3.929 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.414 4.414 8 H 0.091 0.909 9 C 0.219 3.781 10 C -0.067 4.067 11 N -0.424 5.424 12 C -0.092 4.092 13 C 0.270 3.730 14 N -0.470 5.470 15 C 0.064 3.936 16 C -0.117 4.117 17 C -0.119 4.119 18 C -0.089 4.089 19 C 0.060 3.940 20 C 0.041 3.959 21 O -0.391 6.391 22 C 0.001 3.999 23 N -0.478 5.478 24 H 0.277 0.723 25 H 0.134 0.866 26 H 0.131 0.869 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.121 -0.333 -2.249 7.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.155 4.155 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.445 4.445 8 H 0.109 0.891 9 C 0.092 3.908 10 C -0.237 4.237 11 N -0.136 5.136 12 C -0.252 4.252 13 C 0.031 3.969 14 N -0.193 5.193 15 C -0.063 4.063 16 C -0.155 4.155 17 C -0.156 4.156 18 C -0.127 4.127 19 C -0.030 4.030 20 C -0.036 4.036 21 O -0.309 6.309 22 C -0.077 4.077 23 N -0.200 5.200 24 H 0.088 0.912 25 H 0.151 0.849 26 H 0.148 0.852 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.466 -0.612 -2.389 7.862 hybrid contribution 0.558 1.498 0.063 1.600 sum -6.907 0.887 -2.326 7.342 Atomic orbital electron populations 1.69979 1.07411 1.28550 1.27626 1.26076 0.94959 1.01382 0.93095 0.86243 0.80514 0.80219 0.79504 1.19167 1.20034 1.18320 1.19641 0.95279 0.89288 1.40334 0.89090 1.19230 0.88437 0.93438 0.89687 1.23157 1.00017 0.89029 1.11465 1.67727 1.08030 1.30687 1.07160 1.22248 0.91283 0.96371 1.15302 1.20660 0.89345 0.91519 0.95360 1.59859 1.06168 1.49576 1.03716 1.21959 0.91638 0.96035 0.96676 1.21609 0.96448 1.01620 0.95813 1.21572 0.99329 0.99255 0.95460 1.21285 0.91774 1.00322 0.99274 1.23851 0.96285 0.94960 0.87912 1.24175 0.98777 0.89286 0.91392 1.89581 1.93047 1.17494 1.30789 1.25263 1.01389 0.94453 0.86625 1.69287 1.08776 1.25057 1.16838 0.91158 0.84851 0.85179 0.91537 0.91128 0.91821 0.91646 0.92037 0.91982 0.91049 0.90889 0.89449 0.89657 0.90852 0.85279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -16.95 11.59 55.55 0.64 -16.31 16 2 C 0.07 1.65 5.47 -17.34 -0.09 1.56 16 3 Si 0.91 17.32 29.57 -169.99 -5.03 12.29 16 4 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 7 C -0.41 -10.14 9.15 -37.75 -0.35 -10.49 16 8 H 0.09 2.08 7.86 -52.49 -0.41 1.67 16 9 C 0.22 5.60 6.51 -84.83 -0.55 5.05 16 10 C -0.07 -1.63 10.97 -16.58 -0.18 -1.81 16 11 N -0.42 -10.24 10.47 -12.11 -0.13 -10.36 16 12 C -0.09 -2.12 9.68 -16.78 -0.16 -2.28 16 13 C 0.27 6.14 4.00 -155.01 -0.62 5.52 16 14 N -0.47 -9.19 4.65 -167.58 -0.78 -9.97 16 15 C 0.06 1.19 5.00 -3.77 -0.02 1.17 16 16 C -0.12 -1.68 6.04 -26.68 -0.16 -1.84 16 17 C -0.12 -1.60 5.93 -26.54 -0.16 -1.75 16 18 C -0.09 -1.29 5.18 -26.77 -0.14 -1.43 16 19 C 0.06 1.09 0.97 -131.47 -0.13 0.96 16 20 C 0.04 0.77 8.16 37.39 0.31 1.07 16 21 O -0.39 -8.14 12.36 -35.23 -0.44 -8.57 16 22 C 0.00 0.01 7.53 37.40 0.28 0.29 16 23 N -0.48 -11.81 4.70 -10.14 -0.05 -11.86 16 24 H 0.28 6.01 8.29 -40.82 -0.34 5.68 16 25 H 0.13 2.95 8.06 -52.49 -0.42 2.53 16 26 H 0.13 2.74 8.06 -52.49 -0.42 2.32 16 27 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 28 H 0.07 1.48 7.41 -51.93 -0.38 1.10 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.88 7.63 -51.93 -0.40 0.48 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 1.83 5.68 -51.93 -0.30 1.53 16 36 H 0.09 1.34 8.09 -51.93 -0.42 0.92 16 37 H 0.07 1.41 7.59 -51.93 -0.39 1.01 16 38 H 0.13 3.14 5.13 -51.93 -0.27 2.87 16 LS Contribution 301.79 15.07 4.55 4.55 Total: -1.00 -26.59 301.79 -8.28 -34.86 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.08 Total: 9.36 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.97 Total: -3.99 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.31 Total: -48.50 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.44 Total: -8.57 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.59 -8.28 -34.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166691952.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.648 kcal (2) G-P(sol) polarization free energy of solvation -26.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds