Wall clock time and date at job start Mon Mar 30 2020 01:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99693 * 2 1 4 4 H 1.48498 * 109.46906 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47024 * 300.00450 * 3 2 1 6 6 H 1.48496 * 109.46905 * 60.00960 * 3 2 1 7 7 C 1.37876 * 120.00616 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00260 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99739 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.53356 * 59.90066 * 9 7 2 11 11 C 1.53120 * 109.49677 * 299.80119 * 9 7 2 12 12 C 1.53123 * 109.14876 * 182.39938 * 11 9 7 13 13 C 1.53039 * 109.27793 * 57.67199 * 12 11 9 14 14 N 1.46851 * 109.51083 * 300.80453 * 13 12 11 15 15 C 1.38266 * 110.99339 * 185.84410 * 14 13 12 16 16 N 1.32432 * 119.83063 * 322.54215 * 15 14 13 17 17 C 1.31844 * 121.77498 * 179.97438 * 16 15 14 18 18 C 1.38376 * 121.21929 * 0.02562 * 17 16 15 19 19 C 1.38326 * 119.51272 * 359.97438 * 18 17 16 20 20 C 1.39981 * 118.36259 * 359.75714 * 19 18 17 21 21 C 1.47427 * 120.60951 * 180.26470 * 20 19 18 22 22 N 1.34775 * 119.99660 * 5.19090 * 21 20 19 23 23 O 1.21602 * 120.00152 * 185.19435 * 21 20 19 24 24 C 1.46840 * 111.19822 * 61.74850 * 14 13 12 25 25 H 0.96998 * 120.00802 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.52684 * 302.30831 * 11 9 7 27 27 H 1.09007 * 109.52292 * 62.44067 * 11 9 7 28 28 H 1.09002 * 109.51410 * 297.72549 * 12 11 9 29 29 H 1.09002 * 109.49423 * 177.60901 * 12 11 9 30 30 H 1.09002 * 109.46003 * 180.79767 * 13 12 11 31 31 H 1.08999 * 109.46063 * 60.81563 * 13 12 11 32 32 H 1.08004 * 119.38712 * 180.02562 * 17 16 15 33 33 H 1.08006 * 120.24353 * 179.97438 * 18 17 16 34 34 H 1.08001 * 120.82229 * 180.02562 * 19 18 17 35 35 H 0.96996 * 120.00345 * 0.02562 * 22 21 20 36 36 H 0.97000 * 119.99786 * 179.97438 * 22 21 20 37 37 H 1.09001 * 109.46430 * 58.27556 * 24 14 13 38 38 H 1.08999 * 109.46362 * 178.24562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8901 2.3966 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6224 -2.5571 -0.8890 11 6 0.3748 -2.5834 1.2523 12 6 -0.3407 -3.9370 1.2747 13 6 0.6993 -5.0590 1.2373 14 7 1.5114 -4.9347 0.0201 15 6 2.3746 -6.0068 -0.1111 16 7 2.9511 -6.5237 0.9633 17 6 3.7798 -7.5460 0.8825 18 6 4.0857 -8.1269 -0.3356 19 6 3.5124 -7.6281 -1.4915 20 6 2.6311 -6.5460 -1.3832 21 6 1.9877 -5.9789 -2.5824 22 7 2.1631 -6.5663 -3.7826 23 8 1.2988 -4.9813 -2.4885 24 6 2.2450 -3.6628 -0.0011 25 1 -0.4851 0.8400 0.0004 26 1 0.9990 -2.4865 2.1406 27 1 -0.3625 -1.7808 1.2357 28 1 -0.9944 -4.0176 0.4061 29 1 -0.9333 -4.0202 2.1858 30 1 0.1926 -6.0241 1.2389 31 1 1.3440 -4.9859 2.1132 32 1 4.2281 -7.9373 1.7839 33 1 4.7670 -8.9636 -0.3835 34 1 3.7360 -8.0655 -2.4533 35 1 2.7124 -7.3623 -3.8574 36 1 1.7396 -6.1934 -4.5716 37 1 2.8825 -3.5965 0.8804 38 1 2.8608 -3.6138 -0.8991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:39 Heat of formation + Delta-G solvation = 13.372800 kcal Electronic energy + Delta-G solvation = -21784.889840 eV Core-core repulsion = 18627.455616 eV Total energy + Delta-G solvation = -3157.434224 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.72216 -38.46782 -37.73590 -34.06184 -33.47396 -32.07923 -31.89879 -29.81956 -29.33919 -24.95603 -24.47612 -24.09043 -21.80487 -21.16641 -20.67167 -18.54080 -18.01913 -17.03622 -16.84693 -15.93080 -15.64610 -14.90228 -14.72929 -14.46380 -14.27193 -13.91837 -13.31541 -13.23713 -13.09282 -12.64237 -12.44600 -12.22372 -12.13899 -11.58061 -10.89604 -10.64619 -10.62238 -10.02082 -9.99247 -9.86127 -9.73490 -9.58173 -9.43820 -9.35129 -9.06236 -8.83841 -8.59795 -8.19687 -7.70485 -5.87570 -3.92989 0.77390 1.20272 3.16605 3.36310 3.43685 3.47793 3.62405 3.92442 4.08576 4.53061 4.58451 4.67171 4.84704 5.11032 5.25426 5.42598 5.50107 5.78686 5.81052 5.95147 6.01561 6.17599 6.30113 6.40081 6.55538 6.59965 6.81286 6.84489 6.96591 7.06612 7.28958 7.46454 7.51015 7.59485 7.85450 7.92868 8.04382 8.24012 8.29741 8.57423 8.59303 9.10833 9.70078 11.18754 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021354 B = 0.005572 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.936148 B = 5023.585630 C = 5360.757182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.052 0.948 9 C 0.058 3.942 10 H 0.043 0.957 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.068 3.932 14 N -0.467 5.467 15 C 0.370 3.630 16 N -0.521 5.521 17 C 0.139 3.861 18 C -0.208 4.208 19 C -0.038 4.038 20 C -0.183 4.183 21 C 0.554 3.446 22 N -0.863 5.863 23 O -0.475 6.475 24 C 0.091 3.909 25 H 0.258 0.742 26 H 0.031 0.969 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.155 0.845 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.392 0.608 36 H 0.403 0.597 37 H 0.027 0.973 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.445 -18.190 -3.057 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.071 0.929 9 C 0.039 3.961 10 H 0.061 0.939 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.059 4.059 14 N -0.187 5.187 15 C 0.139 3.861 16 N -0.234 5.234 17 C -0.021 4.021 18 C -0.228 4.228 19 C -0.064 4.064 20 C -0.190 4.190 21 C 0.338 3.662 22 N -0.430 5.430 23 O -0.346 6.346 24 C -0.033 4.033 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.172 0.828 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.220 0.780 36 H 0.234 0.766 37 H 0.045 0.955 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.316 -16.933 -2.372 17.906 hybrid contribution 1.385 0.034 -0.535 1.485 sum 6.700 -16.899 -2.906 18.410 Atomic orbital electron populations 1.69905 1.05788 1.26075 1.50855 1.24907 0.94804 0.98813 0.95245 0.86583 0.80109 0.84083 0.77475 1.19935 1.21081 1.21111 1.21147 0.92764 0.90615 1.50440 0.92940 1.18669 0.92583 0.89596 0.95259 0.93852 1.21673 1.00081 0.94675 0.98474 1.21695 0.97137 0.96307 1.00363 1.22018 0.95202 0.98666 0.89966 1.59721 1.19948 1.00972 1.38064 1.20249 0.86949 0.91498 0.87363 1.68088 1.09526 1.12341 1.33443 1.22801 0.91717 0.90082 0.97474 1.21917 1.04066 1.03458 0.93385 1.21636 0.92739 0.92987 0.99078 1.20644 1.03642 0.99836 0.94917 1.17861 0.81460 0.84106 0.82820 1.43769 1.56116 1.33193 1.09940 1.91036 1.35979 1.22829 1.84801 1.22270 0.96289 0.85880 0.98827 0.93181 0.95054 0.88983 0.91959 0.93221 0.92776 0.93708 0.82769 0.84590 0.84702 0.78014 0.76649 0.95513 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 11.36 55.43 0.63 -25.65 16 2 C 0.06 1.82 5.30 -17.82 -0.09 1.73 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.51 -14.74 8.56 -34.44 -0.29 -15.04 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.06 1.56 2.26 -91.69 -0.21 1.35 16 10 H 0.04 1.32 8.14 -51.93 -0.42 0.90 16 11 C -0.11 -2.79 5.03 -26.61 -0.13 -2.92 16 12 C -0.12 -2.50 6.09 -26.65 -0.16 -2.66 16 13 C 0.07 1.38 4.94 -3.83 -0.02 1.36 16 14 N -0.47 -9.89 2.84 -173.01 -0.49 -10.38 16 15 C 0.37 6.77 5.55 -155.18 -0.86 5.91 16 16 N -0.52 -8.64 9.25 -12.20 -0.11 -8.75 16 17 C 0.14 1.68 11.16 -17.50 -0.20 1.48 16 18 C -0.21 -2.01 10.08 -39.50 -0.40 -2.41 16 19 C -0.04 -0.40 9.63 -38.90 -0.37 -0.77 16 20 C -0.18 -2.80 5.91 -104.64 -0.62 -3.42 16 21 C 0.55 8.97 8.03 -12.52 -0.10 8.87 16 22 N -0.86 -9.01 8.83 30.43 0.27 -8.74 16 23 O -0.48 -10.28 15.19 5.28 0.08 -10.20 16 24 C 0.09 2.17 4.04 -3.84 -0.02 2.15 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.09 2.55 6.16 -51.93 -0.32 2.23 16 28 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.05 1.00 8.10 -51.93 -0.42 0.58 16 31 H 0.04 0.91 7.79 -51.93 -0.40 0.50 16 32 H 0.16 1.35 8.06 -52.48 -0.42 0.92 16 33 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 34 H 0.14 0.87 6.55 -52.49 -0.34 0.52 16 35 H 0.39 2.60 6.96 -40.82 -0.28 2.32 16 36 H 0.40 3.80 8.93 -40.82 -0.36 3.44 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 1.45 7.85 -51.93 -0.41 1.04 16 LS Contribution 310.13 15.07 4.67 4.67 Total: -1.00 -34.50 310.13 -8.49 -42.99 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.05 Total: 3.46 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -3.48 Total: -4.39 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.29 Total: -53.52 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.50 -8.49 -42.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.365 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds