Wall clock time and date at job start Mon Mar 30 2020 01:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99693 * 2 1 4 4 H 1.48498 * 109.46906 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47024 * 300.00450 * 3 2 1 6 6 H 1.48496 * 109.46905 * 60.00960 * 3 2 1 7 7 C 1.37876 * 120.00616 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00260 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99739 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.53356 * 59.90066 * 9 7 2 11 11 C 1.53120 * 109.49677 * 299.80119 * 9 7 2 12 12 C 1.53123 * 109.14876 * 182.39938 * 11 9 7 13 13 C 1.53039 * 109.27793 * 57.67199 * 12 11 9 14 14 N 1.46851 * 109.51083 * 300.80453 * 13 12 11 15 15 C 1.38266 * 110.99339 * 185.84410 * 14 13 12 16 16 N 1.32432 * 119.83063 * 322.54215 * 15 14 13 17 17 C 1.31844 * 121.77498 * 179.97438 * 16 15 14 18 18 C 1.38376 * 121.21929 * 0.02562 * 17 16 15 19 19 C 1.38326 * 119.51272 * 359.97438 * 18 17 16 20 20 C 1.39981 * 118.36259 * 359.75714 * 19 18 17 21 21 C 1.47427 * 120.60951 * 180.26470 * 20 19 18 22 22 N 1.34775 * 119.99660 * 5.19090 * 21 20 19 23 23 O 1.21602 * 120.00152 * 185.19435 * 21 20 19 24 24 C 1.46840 * 111.19822 * 61.74850 * 14 13 12 25 25 H 0.96998 * 120.00802 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.52684 * 302.30831 * 11 9 7 27 27 H 1.09007 * 109.52292 * 62.44067 * 11 9 7 28 28 H 1.09002 * 109.51410 * 297.72549 * 12 11 9 29 29 H 1.09002 * 109.49423 * 177.60901 * 12 11 9 30 30 H 1.09002 * 109.46003 * 180.79767 * 13 12 11 31 31 H 1.08999 * 109.46063 * 60.81563 * 13 12 11 32 32 H 1.08004 * 119.38712 * 180.02562 * 17 16 15 33 33 H 1.08006 * 120.24353 * 179.97438 * 18 17 16 34 34 H 1.08001 * 120.82229 * 180.02562 * 19 18 17 35 35 H 0.96996 * 120.00345 * 0.02562 * 22 21 20 36 36 H 0.97000 * 119.99786 * 179.97438 * 22 21 20 37 37 H 1.09001 * 109.46430 * 58.27556 * 24 14 13 38 38 H 1.08999 * 109.46362 * 178.24562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8901 2.3966 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6224 -2.5571 -0.8890 11 6 0.3748 -2.5834 1.2523 12 6 -0.3407 -3.9370 1.2747 13 6 0.6993 -5.0590 1.2373 14 7 1.5114 -4.9347 0.0201 15 6 2.3746 -6.0068 -0.1111 16 7 2.9511 -6.5237 0.9633 17 6 3.7798 -7.5460 0.8825 18 6 4.0857 -8.1269 -0.3356 19 6 3.5124 -7.6281 -1.4915 20 6 2.6311 -6.5460 -1.3832 21 6 1.9877 -5.9789 -2.5824 22 7 2.1631 -6.5663 -3.7826 23 8 1.2988 -4.9813 -2.4885 24 6 2.2450 -3.6628 -0.0011 25 1 -0.4851 0.8400 0.0004 26 1 0.9990 -2.4865 2.1406 27 1 -0.3625 -1.7808 1.2357 28 1 -0.9944 -4.0176 0.4061 29 1 -0.9333 -4.0202 2.1858 30 1 0.1926 -6.0241 1.2389 31 1 1.3440 -4.9859 2.1132 32 1 4.2281 -7.9373 1.7839 33 1 4.7670 -8.9636 -0.3835 34 1 3.7360 -8.0655 -2.4533 35 1 2.7124 -7.3623 -3.8574 36 1 1.7396 -6.1934 -4.5716 37 1 2.8825 -3.5965 0.8804 38 1 2.8608 -3.6138 -0.8991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:38 Heat of formation + Delta-G solvation = -12.492173 kcal Electronic energy + Delta-G solvation = -21786.011429 eV Core-core repulsion = 18627.455616 eV Total energy + Delta-G solvation = -3158.555813 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.90742 -39.78020 -39.22882 -35.77313 -34.80845 -33.72519 -33.06436 -31.75538 -30.65592 -27.01212 -25.74370 -25.43500 -23.43401 -22.81325 -21.78664 -20.41651 -19.15011 -18.61680 -18.01563 -17.60789 -16.80119 -16.63727 -16.12429 -15.80096 -15.59158 -15.38494 -15.03340 -14.72250 -14.42179 -14.32328 -13.94599 -13.84672 -13.47186 -13.23697 -12.87583 -12.69854 -12.56950 -11.91448 -11.80226 -11.50183 -11.18845 -10.97003 -10.90756 -10.75603 -10.58734 -10.52044 -10.40617 -10.06033 -9.17806 -8.08743 -6.23810 -0.27323 0.23388 1.39000 1.39527 1.52185 2.03890 2.41004 2.60465 2.72857 2.90301 3.17561 3.57906 3.88883 3.93137 4.02066 4.18333 4.21425 4.31334 4.39071 4.52261 4.61721 4.65228 4.82636 4.87644 4.94300 5.03345 5.10532 5.13103 5.34259 5.44896 5.57571 5.60636 5.85073 6.01131 6.06656 6.13527 6.38723 6.43316 6.60590 6.86882 6.97095 7.43278 7.52515 8.96992 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021354 B = 0.005572 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.936148 B = 5023.585630 C = 5360.757182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.047 0.953 9 C 0.061 3.939 10 H -0.006 1.006 11 C -0.101 4.101 12 C -0.109 4.109 13 C 0.078 3.922 14 N -0.480 5.480 15 C 0.326 3.674 16 N -0.550 5.550 17 C 0.128 3.872 18 C -0.178 4.178 19 C -0.026 4.026 20 C -0.200 4.200 21 C 0.549 3.451 22 N -0.834 5.834 23 O -0.547 6.547 24 C 0.117 3.883 25 H 0.262 0.738 26 H 0.027 0.973 27 H 0.063 0.937 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.189 0.811 33 H 0.189 0.811 34 H 0.184 0.816 35 H 0.414 0.586 36 H 0.409 0.591 37 H 0.015 0.985 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.814 -21.095 -3.255 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.185 4.185 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.066 0.934 9 C 0.042 3.958 10 H 0.012 0.988 11 C -0.140 4.140 12 C -0.147 4.147 13 C -0.049 4.049 14 N -0.200 5.200 15 C 0.097 3.903 16 N -0.264 5.264 17 C -0.031 4.031 18 C -0.198 4.198 19 C -0.052 4.052 20 C -0.208 4.208 21 C 0.333 3.667 22 N -0.401 5.401 23 O -0.424 6.424 24 C -0.009 4.009 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.205 0.795 33 H 0.206 0.794 34 H 0.201 0.799 35 H 0.247 0.753 36 H 0.241 0.759 37 H 0.033 0.967 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.721 -19.924 -2.607 21.526 hybrid contribution 0.761 0.724 -0.527 1.175 sum 8.483 -19.200 -3.134 21.223 Atomic orbital electron populations 1.70055 1.07259 1.27126 1.50984 1.25756 0.95733 1.02437 0.94528 0.85490 0.78881 0.79326 0.77844 1.19286 1.20432 1.20031 1.21466 0.92748 0.92127 1.51285 0.93432 1.18501 0.92750 0.90739 0.93832 0.98753 1.21457 0.99148 0.96084 0.97280 1.21596 0.97328 0.94768 1.00978 1.21900 0.94656 0.98527 0.89829 1.59524 1.21247 1.00780 1.38451 1.20202 0.89013 0.91916 0.89207 1.67948 1.10906 1.14245 1.33282 1.23524 0.90517 0.88897 1.00187 1.22496 1.02488 1.03138 0.91682 1.22177 0.90383 0.90743 1.01864 1.20745 1.05120 1.01574 0.93322 1.18218 0.80643 0.83400 0.84412 1.43476 1.55102 1.33105 1.08419 1.91016 1.39318 1.26030 1.85986 1.21707 0.94952 0.87073 0.97120 0.92926 0.95465 0.91884 0.93604 0.90383 0.91003 0.94036 0.79461 0.79378 0.79870 0.75342 0.75878 0.96688 0.94175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.59 11.36 21.45 0.24 -56.35 16 2 C 0.01 0.84 5.30 84.66 0.45 1.29 16 3 Si 0.96 46.33 29.54 68.60 2.03 48.35 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.54 -32.74 8.56 25.60 0.22 -32.52 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 9 C 0.06 3.51 2.26 -11.49 -0.03 3.49 16 10 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 11 C -0.10 -5.42 5.03 30.68 0.15 -5.27 16 12 C -0.11 -4.85 6.09 30.65 0.19 -4.67 16 13 C 0.08 3.22 4.94 86.33 0.43 3.65 16 14 N -0.48 -21.31 2.84 -701.29 -1.99 -23.30 16 15 C 0.33 11.98 5.55 133.65 0.74 12.72 16 16 N -0.55 -17.64 9.25 -192.51 -1.78 -19.42 16 17 C 0.13 2.61 11.16 84.72 0.95 3.56 16 18 C -0.18 -2.45 10.08 22.32 0.23 -2.22 16 19 C -0.03 -0.42 9.63 22.71 0.22 -0.20 16 20 C -0.20 -5.90 5.91 -19.88 -0.12 -6.01 16 21 C 0.55 17.81 8.03 86.66 0.70 18.51 16 22 N -0.83 -15.86 8.83 -175.89 -1.55 -17.41 16 23 O -0.55 -25.14 15.19 -4.04 -0.06 -25.20 16 24 C 0.12 5.94 4.04 86.32 0.35 6.29 16 25 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 26 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 3.71 6.16 -2.38 -0.01 3.69 16 28 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 30 H 0.07 2.69 8.10 -2.39 -0.02 2.67 16 31 H 0.04 1.72 7.79 -2.39 -0.02 1.70 16 32 H 0.19 2.42 8.06 -2.91 -0.02 2.39 16 33 H 0.19 0.73 8.06 -2.91 -0.02 0.71 16 34 H 0.18 1.14 6.55 -2.91 -0.02 1.12 16 35 H 0.41 3.89 6.96 -92.71 -0.64 3.25 16 36 H 0.41 7.22 8.93 -92.71 -0.83 6.39 16 37 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.04 2.12 7.85 -2.39 -0.02 2.10 16 Total: -1.00 -83.91 310.13 0.97 -82.94 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -0.38 Total: 11.78 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 4.47 Total: -1.40 kcal Atomic # 7 Polarization: -111.39 SS G_CDS: -5.08 Total: -116.47 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.06 Total: -25.20 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -83.91 0.97 -82.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.447 kcal (2) G-P(sol) polarization free energy of solvation -83.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds