Wall clock time and date at job start Mon Mar 30 2020 02:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00141 * 2 1 4 4 H 1.48497 * 109.47247 * 240.00054 * 3 2 1 5 5 H 1.48501 * 109.47092 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47485 * 119.99922 * 3 2 1 7 7 C 1.37878 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99961 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99970 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.50208 * 299.99499 * 9 7 2 11 11 C 1.53123 * 109.50354 * 60.07355 * 9 7 2 12 12 C 1.53115 * 109.15886 * 177.63232 * 11 9 7 13 13 C 1.53028 * 109.28362 * 302.34747 * 12 11 9 14 14 N 1.46847 * 109.52289 * 59.17763 * 13 12 11 15 15 C 1.39028 * 111.00031 * 174.16263 * 14 13 12 16 16 C 1.39124 * 119.64632 * 56.04898 * 15 14 13 17 17 C 1.39500 * 118.92978 * 179.97438 * 16 15 14 18 18 C 1.48169 * 120.87733 * 179.97438 * 17 16 15 19 19 N 1.34773 * 119.99505 * 180.02562 * 18 17 16 20 20 O 1.21512 * 120.00395 * 0.02562 * 18 17 16 21 21 C 1.40008 * 118.23704 * 359.97438 * 17 16 15 22 22 C 1.37941 * 119.17985 * 0.02562 * 21 17 16 23 23 N 1.31929 * 120.99792 * 359.74110 * 22 21 17 24 24 C 1.46933 * 111.22239 * 298.25619 * 14 13 12 25 25 H 0.97004 * 119.99788 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.52349 * 297.54046 * 11 9 7 27 27 H 1.09000 * 109.51883 * 57.66787 * 11 9 7 28 28 H 1.09005 * 109.50370 * 62.28898 * 12 11 9 29 29 H 1.09000 * 109.50348 * 182.40046 * 12 11 9 30 30 H 1.09001 * 109.46921 * 179.19583 * 13 12 11 31 31 H 1.09004 * 109.46294 * 299.17346 * 13 12 11 32 32 H 1.07998 * 120.53186 * 359.97438 * 16 15 14 33 33 H 0.97000 * 120.00213 * 359.97438 * 19 18 17 34 34 H 0.97010 * 120.00036 * 180.02562 * 19 18 17 35 35 H 1.08009 * 120.41073 * 180.02562 * 21 17 16 36 36 H 1.07999 * 119.50075 * 179.97438 * 22 21 17 37 37 H 1.09000 * 109.45389 * 301.73952 * 24 14 13 38 38 H 1.09002 * 109.51493 * 181.73472 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6239 -2.5572 0.8902 11 6 0.3723 -2.5821 -1.2507 12 6 -0.3441 -3.9352 -1.2729 13 6 0.6952 -5.0578 -1.2379 14 7 1.5097 -4.9349 -0.0222 15 6 2.3772 -6.0135 0.1075 16 6 3.2656 -6.3098 -0.9213 17 6 4.1297 -7.3951 -0.7752 18 6 5.0928 -7.7496 -1.8439 19 7 5.9192 -8.8022 -1.6842 20 8 5.1376 -7.0913 -2.8643 21 6 4.0628 -8.1405 0.4081 22 6 3.1525 -7.7796 1.3797 23 7 2.3529 -6.7440 1.2105 24 6 2.2449 -3.6629 -0.0009 25 1 -0.4850 0.8401 0.0004 26 1 -0.3652 -1.7797 -1.2318 27 1 0.9948 -2.4838 -2.1401 28 1 -0.9964 -4.0159 -0.4033 29 1 -0.9383 -4.0175 -2.1830 30 1 0.1880 -6.0226 -1.2391 31 1 1.3385 -4.9847 -2.1148 32 1 3.2859 -5.7092 -1.8186 33 1 5.8837 -9.3275 -0.8695 34 1 6.5500 -9.0342 -2.3837 35 1 4.7158 -8.9876 0.5584 36 1 3.0962 -8.3512 2.2943 37 1 2.8807 -3.5963 -0.8837 38 1 2.8624 -3.6142 0.8959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740948.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:18 Heat of formation + Delta-G solvation = -19.517356 kcal Electronic energy + Delta-G solvation = -21075.680159 eV Core-core repulsion = 17916.819711 eV Total energy + Delta-G solvation = -3158.860448 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.95101 -40.43182 -39.21411 -35.81416 -35.03771 -33.69233 -33.38274 -31.81387 -30.51839 -26.99905 -25.95851 -25.60623 -23.64706 -23.17205 -21.62822 -20.45277 -19.44703 -18.46844 -18.28920 -17.28573 -16.84885 -16.66360 -16.57170 -16.17658 -15.83421 -15.59829 -15.06499 -14.95915 -14.69836 -14.38297 -14.30177 -13.94419 -13.47439 -12.98469 -12.84795 -12.69963 -12.59697 -11.93726 -11.83216 -11.61540 -11.48249 -11.09320 -11.05219 -10.81000 -10.78938 -10.73569 -10.40966 -10.01233 -9.37644 -8.09119 -6.23625 -0.38806 -0.05100 1.41668 1.43137 1.50813 1.74153 2.27043 2.38862 2.54272 2.72741 3.17922 3.59955 3.72390 3.79682 3.88111 3.99299 4.15045 4.18508 4.33426 4.46607 4.57266 4.58760 4.72506 4.79168 4.86268 4.88876 4.99823 5.08039 5.31908 5.38254 5.50430 5.61611 5.75637 5.82585 6.00827 6.12656 6.19030 6.28915 6.37748 6.86146 7.06631 7.15516 7.43970 8.95690 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022630 B = 0.004471 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.992994 B = 6261.382695 C = 6623.671364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.049 0.951 9 C 0.056 3.944 10 H 0.001 0.999 11 C -0.104 4.104 12 C -0.108 4.108 13 C 0.075 3.925 14 N -0.512 5.512 15 C 0.295 3.705 16 C -0.159 4.159 17 C -0.093 4.093 18 C 0.563 3.437 19 N -0.816 5.816 20 O -0.583 6.583 21 C -0.125 4.125 22 C 0.109 3.891 23 N -0.483 5.483 24 C 0.097 3.903 25 H 0.262 0.738 26 H 0.065 0.935 27 H 0.026 0.974 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.122 0.878 33 H 0.422 0.578 34 H 0.417 0.583 35 H 0.196 0.804 36 H 0.207 0.793 37 H 0.023 0.977 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.406 -21.688 0.036 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.780 3.220 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.197 1.197 7 C -0.579 4.579 8 H 0.067 0.933 9 C 0.037 3.963 10 H 0.019 0.981 11 C -0.143 4.143 12 C -0.146 4.146 13 C -0.051 4.051 14 N -0.235 5.235 15 C 0.067 3.933 16 C -0.183 4.183 17 C -0.105 4.105 18 C 0.348 3.652 19 N -0.381 5.381 20 O -0.463 6.463 21 C -0.145 4.145 22 C -0.049 4.049 23 N -0.194 5.194 24 C -0.029 4.029 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.054 0.946 32 H 0.140 0.860 33 H 0.255 0.745 34 H 0.251 0.749 35 H 0.213 0.787 36 H 0.224 0.776 37 H 0.041 0.959 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.243 -20.836 0.520 22.414 hybrid contribution 1.474 0.908 -1.260 2.141 sum 9.717 -19.929 -0.741 22.184 Atomic orbital electron populations 1.70016 1.07090 1.27290 1.50721 1.25682 0.95690 1.02206 0.94532 0.85664 0.78455 0.79089 0.78753 1.19774 1.20600 1.19730 1.21409 0.92887 0.92025 1.51571 0.93251 1.18583 0.92793 0.90668 0.94281 0.98089 1.21481 0.99229 0.96313 0.97233 1.21588 0.97130 0.94175 1.01662 1.22105 0.94872 0.99809 0.88360 1.58745 1.23818 1.00439 1.40465 1.19642 0.91502 0.92558 0.89602 1.22685 0.96300 0.98464 1.00876 1.20330 0.97075 0.96731 0.96354 1.18282 0.80722 0.80787 0.85416 1.43438 1.39080 1.30573 1.25030 1.90834 1.71047 1.53383 1.31054 1.22763 0.99791 1.00564 0.91387 1.23497 0.89631 0.91553 1.00268 1.67228 1.23736 1.05866 1.22551 1.22036 0.95347 0.87123 0.98445 0.92879 0.91652 0.95525 0.92610 0.90174 0.89847 0.94646 0.86024 0.74506 0.74947 0.78677 0.77638 0.95901 0.93151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.71 11.36 21.45 0.24 -53.47 16 2 C 0.02 1.03 5.30 84.66 0.45 1.48 16 3 Si 0.96 44.68 29.54 68.60 2.03 46.70 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -31.04 8.56 25.60 0.22 -30.82 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.06 2.97 2.26 -11.49 -0.03 2.94 16 10 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 11 C -0.10 -5.15 5.03 30.67 0.15 -5.00 16 12 C -0.11 -4.30 6.09 30.64 0.19 -4.12 16 13 C 0.08 2.77 5.05 86.32 0.44 3.21 16 14 N -0.51 -20.86 4.70 -701.83 -3.30 -24.16 16 15 C 0.30 10.36 5.68 133.08 0.76 11.12 16 16 C -0.16 -5.08 8.30 22.79 0.19 -4.89 16 17 C -0.09 -2.16 5.90 -19.91 -0.12 -2.28 16 18 C 0.56 12.61 8.07 86.88 0.70 13.31 16 19 N -0.82 -7.93 8.83 -175.39 -1.55 -9.48 16 20 O -0.58 -19.31 17.28 -3.75 -0.06 -19.37 16 21 C -0.13 -1.78 9.61 22.63 0.22 -1.57 16 22 C 0.11 2.04 11.16 84.61 0.94 2.98 16 23 N -0.48 -15.02 10.37 -193.40 -2.01 -17.02 16 24 C 0.10 4.48 4.43 86.31 0.38 4.86 16 25 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 26 H 0.06 3.60 6.15 -2.39 -0.01 3.58 16 27 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 29 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.08 2.71 8.10 -2.39 -0.02 2.69 16 31 H 0.04 1.29 7.11 -2.38 -0.02 1.27 16 32 H 0.12 4.40 6.78 -2.91 -0.02 4.38 16 33 H 0.42 0.64 6.97 -92.71 -0.65 -0.01 16 34 H 0.42 3.03 8.93 -92.70 -0.83 2.21 16 35 H 0.20 0.37 6.53 -2.91 -0.02 0.35 16 36 H 0.21 1.97 8.06 -2.91 -0.02 1.94 16 37 H 0.02 1.06 7.75 -2.39 -0.02 1.05 16 38 H 0.05 2.39 8.11 -2.39 -0.02 2.37 16 Total: -1.00 -77.71 311.96 -0.53 -78.24 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -0.37 Total: 7.32 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 4.49 Total: -8.76 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -6.61 Total: -104.13 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.06 Total: -19.37 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -77.71 -0.53 -78.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740948.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.725 kcal (2) G-P(sol) polarization free energy of solvation -77.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds