Wall clock time and date at job start Mon Mar 30 2020 02:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00217 * 2 1 4 4 H 1.48505 * 109.47282 * 269.99931 * 3 2 1 5 5 H 1.48502 * 109.47546 * 30.00232 * 3 2 1 6 6 H 1.48503 * 109.47241 * 150.00389 * 3 2 1 7 7 C 1.37885 * 119.99577 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00287 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99971 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.53631 * 59.89718 * 9 7 2 11 11 C 1.53121 * 109.49898 * 299.80139 * 9 7 2 12 12 C 1.53122 * 109.15839 * 182.40163 * 11 9 7 13 13 C 1.53039 * 109.27577 * 57.65670 * 12 11 9 14 14 N 1.46852 * 109.52340 * 300.81781 * 13 12 11 15 15 C 1.38982 * 110.99916 * 185.84228 * 14 13 12 16 16 C 1.39489 * 119.63919 * 55.78923 * 15 14 13 17 17 C 1.38254 * 119.29103 * 179.74487 * 16 15 14 18 18 C 1.38829 * 118.58281 * 0.25349 * 17 16 15 19 19 C 1.39105 * 119.22619 * 0.02562 * 18 17 16 20 20 C 1.48146 * 119.68158 * 179.97438 * 19 18 17 21 21 N 1.34775 * 120.00269 * 179.97438 * 20 19 18 22 22 O 1.21520 * 119.99808 * 359.97438 * 20 19 18 23 23 N 1.32052 * 119.63533 * 236.08218 * 15 14 13 24 24 C 1.46846 * 111.19354 * 61.74125 * 14 13 12 25 25 H 0.97000 * 119.99593 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.52216 * 302.30640 * 11 9 7 27 27 H 1.09008 * 109.52589 * 62.43972 * 11 9 7 28 28 H 1.09002 * 109.50364 * 177.59479 * 12 11 9 29 29 H 1.09004 * 109.50542 * 297.67614 * 12 11 9 30 30 H 1.09002 * 109.46576 * 180.80499 * 13 12 11 31 31 H 1.08993 * 109.46605 * 60.83641 * 13 12 11 32 32 H 1.08002 * 120.35835 * 0.02740 * 16 15 14 33 33 H 1.07996 * 120.71113 * 180.23198 * 17 16 15 34 34 H 1.07997 * 120.39418 * 179.97438 * 18 17 16 35 35 H 0.97000 * 120.00236 * 359.97438 * 21 20 19 36 36 H 0.97005 * 120.00196 * 180.02562 * 21 20 19 37 37 H 1.09001 * 109.45894 * 58.27957 * 24 14 13 38 38 H 1.09009 * 109.45758 * 178.24324 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4645 -2.1295 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 1 3.8764 -0.6793 0.8876 11 6 4.0222 -0.4767 -1.2537 12 6 5.5521 -0.5337 -1.2769 13 6 6.0038 -1.9954 -1.2404 14 7 5.4906 -2.6375 -0.0234 15 6 5.9902 -3.9278 0.1075 16 6 7.3694 -4.1366 0.1093 17 6 7.8586 -5.4226 0.2453 18 6 6.9534 -6.4677 0.3708 19 6 5.5902 -6.1912 0.3554 20 6 4.6154 -7.2989 0.4880 21 7 3.2932 -7.0382 0.4745 22 8 5.0081 -8.4425 0.6090 23 7 5.1539 -4.9432 0.2230 24 6 4.0223 -2.6367 -0.0016 25 1 -0.4849 0.8401 0.0004 26 1 3.6258 -0.9682 -2.1421 27 1 3.6958 0.5632 -1.2364 28 1 5.9201 -0.0617 -2.1879 29 1 5.9492 -0.0077 -0.4086 30 1 7.0930 -2.0392 -1.2424 31 1 5.6181 -2.5168 -2.1164 32 1 8.0479 -3.3023 0.0101 33 1 8.9221 -5.6101 0.2535 34 1 7.3034 -7.4837 0.4783 35 1 2.9797 -6.1253 0.3783 36 1 2.6549 -7.7635 0.5617 37 1 3.6458 -3.1552 -0.8835 38 1 3.6723 -3.1463 0.8962 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166742462.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:04 Heat of formation + Delta-G solvation = 8.072174 kcal Electronic energy + Delta-G solvation = -21295.704259 eV Core-core repulsion = 18138.040183 eV Total energy + Delta-G solvation = -3157.664076 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.84623 -39.25443 -37.86330 -34.15481 -33.85676 -32.57163 -32.06352 -30.43503 -29.68511 -25.59477 -24.63582 -24.36996 -21.96133 -21.68521 -20.49288 -19.06448 -18.18523 -17.19557 -16.88820 -16.47978 -15.80814 -15.50033 -15.16297 -14.73278 -14.38715 -14.10440 -13.99881 -13.61764 -13.25267 -12.92487 -12.89872 -12.53279 -12.32736 -12.09962 -11.33956 -11.15630 -10.65857 -10.52310 -10.21750 -10.15524 -10.05666 -9.87658 -9.70145 -9.60310 -9.51028 -9.22272 -8.99457 -8.56944 -7.92725 -6.11509 -4.11148 0.65848 1.23446 2.72062 3.23441 3.35606 3.36277 3.37622 3.66822 3.93466 4.35104 4.37506 4.80731 4.99027 5.03766 5.09755 5.20837 5.28965 5.30355 5.43794 5.59033 5.75496 5.87607 6.00882 6.07578 6.11313 6.15891 6.29707 6.38984 6.55123 6.62453 6.67389 6.72830 6.97133 7.12628 7.31514 7.40950 7.52833 7.71305 7.91823 8.22566 8.46587 8.91601 9.50631 11.01563 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022513 B = 0.005296 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.412866 B = 5286.161370 C = 6355.652302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.072 3.928 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.513 4.513 8 H 0.075 0.925 9 C 0.016 3.984 10 H 0.035 0.965 11 C -0.126 4.126 12 C -0.122 4.122 13 C 0.067 3.933 14 N -0.478 5.478 15 C 0.325 3.675 16 C -0.168 4.168 17 C -0.062 4.062 18 C -0.150 4.150 19 C 0.100 3.900 20 C 0.580 3.420 21 N -0.832 5.832 22 O -0.546 6.546 23 N -0.493 5.493 24 C 0.087 3.913 25 H 0.264 0.736 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.417 0.583 36 H 0.404 0.596 37 H 0.045 0.955 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.405 -7.619 -1.754 16.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.225 1.225 6 H -0.189 1.189 7 C -0.551 4.551 8 H 0.093 0.907 9 C -0.003 4.003 10 H 0.053 0.947 11 C -0.164 4.164 12 C -0.159 4.159 13 C -0.058 4.058 14 N -0.195 5.195 15 C 0.090 3.910 16 C -0.191 4.191 17 C -0.088 4.088 18 C -0.172 4.172 19 C -0.039 4.039 20 C 0.363 3.637 21 N -0.395 5.395 22 O -0.423 6.423 23 N -0.211 5.211 24 C -0.039 4.039 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.248 0.752 36 H 0.234 0.766 37 H 0.063 0.937 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.863 -7.676 -1.315 15.901 hybrid contribution 0.528 0.700 -0.539 1.029 sum 14.392 -6.976 -1.854 16.100 Atomic orbital electron populations 1.69892 1.06285 1.26982 1.50635 1.24974 0.94663 0.98993 0.94383 0.86851 0.80026 0.83577 0.77850 1.20663 1.22545 1.18882 1.20920 0.88407 0.94601 1.51214 0.90727 1.19257 0.96493 0.90890 0.93702 0.94657 1.22088 0.92263 1.00673 1.01345 1.21707 0.98528 0.94158 1.01548 1.22191 0.99149 0.95873 0.88610 1.59186 1.13497 1.10866 1.35917 1.19999 0.89710 0.88554 0.92773 1.21825 0.94954 0.98267 1.04048 1.21412 1.00261 0.91770 0.95392 1.21886 0.92549 1.01064 1.01720 1.20815 0.92540 0.90688 0.99891 1.17922 0.82862 0.87193 0.75692 1.43706 1.06660 1.14348 1.74799 1.90799 1.79582 1.21300 1.50581 1.67569 1.39584 0.98537 1.15375 1.22084 0.80478 0.99483 1.01810 0.92629 0.92197 0.93166 0.91906 0.91421 0.90801 0.93737 0.84213 0.84175 0.83885 0.75232 0.76559 0.93697 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 13.96 55.43 0.77 -26.05 16 2 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 3 Si 0.89 21.30 24.36 -169.99 -4.14 17.16 16 4 H -0.28 -6.52 6.89 56.52 0.39 -6.13 16 5 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.26 -6.08 6.53 56.52 0.37 -5.71 16 7 C -0.51 -13.76 9.14 -34.44 -0.31 -14.07 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.02 0.35 1.85 -91.70 -0.17 0.18 16 10 H 0.04 0.83 7.20 -51.93 -0.37 0.46 16 11 C -0.13 -2.53 4.74 -26.61 -0.13 -2.66 16 12 C -0.12 -1.91 6.09 -26.65 -0.16 -2.07 16 13 C 0.07 0.97 5.25 -3.83 -0.02 0.95 16 14 N -0.48 -7.89 4.68 -173.22 -0.81 -8.70 16 15 C 0.32 4.91 6.41 -155.20 -0.99 3.91 16 16 C -0.17 -2.00 9.18 -39.11 -0.36 -2.36 16 17 C -0.06 -0.65 10.16 -39.36 -0.40 -1.05 16 18 C -0.15 -1.84 9.63 -39.04 -0.38 -2.21 16 19 C 0.10 1.44 6.74 -83.03 -0.56 0.88 16 20 C 0.58 8.43 8.08 -12.19 -0.10 8.33 16 21 N -0.83 -10.02 8.86 30.60 0.27 -9.75 16 22 O -0.55 -9.09 17.15 5.35 0.09 -8.99 16 23 N -0.49 -7.67 7.86 -9.00 -0.07 -7.74 16 24 C 0.09 1.69 3.87 -3.84 -0.01 1.67 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.05 1.08 3.37 -51.92 -0.17 0.90 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 0.84 6.66 -51.93 -0.35 0.50 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.14 1.36 7.14 -52.49 -0.37 0.99 16 33 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.14 1.60 7.63 -52.49 -0.40 1.20 16 35 H 0.42 5.09 8.16 -40.82 -0.33 4.76 16 36 H 0.40 3.96 8.93 -40.82 -0.36 3.60 16 37 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 38 H 0.08 1.61 7.71 -51.92 -0.40 1.21 16 LS Contribution 305.80 15.07 4.61 4.61 Total: -1.00 -31.36 305.80 -7.87 -39.23 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -4.90 Total: 6.83 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -3.69 Total: -6.58 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.16 Total: -52.24 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.14 Total: 17.16 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.36 -7.87 -39.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742462.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.299 kcal (2) G-P(sol) polarization free energy of solvation -31.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds