Wall clock time and date at job start Mon Mar 30 2020 02:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00217 * 2 1 4 4 H 1.48505 * 109.47282 * 269.99931 * 3 2 1 5 5 H 1.48502 * 109.47546 * 30.00232 * 3 2 1 6 6 H 1.48503 * 109.47241 * 150.00389 * 3 2 1 7 7 C 1.37885 * 119.99577 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00287 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99971 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.53631 * 59.89718 * 9 7 2 11 11 C 1.53121 * 109.49898 * 299.80139 * 9 7 2 12 12 C 1.53122 * 109.15839 * 182.40163 * 11 9 7 13 13 C 1.53039 * 109.27577 * 57.65670 * 12 11 9 14 14 N 1.46852 * 109.52340 * 300.81781 * 13 12 11 15 15 C 1.38982 * 110.99916 * 185.84228 * 14 13 12 16 16 C 1.39489 * 119.63919 * 55.78923 * 15 14 13 17 17 C 1.38254 * 119.29103 * 179.74487 * 16 15 14 18 18 C 1.38829 * 118.58281 * 0.25349 * 17 16 15 19 19 C 1.39105 * 119.22619 * 0.02562 * 18 17 16 20 20 C 1.48146 * 119.68158 * 179.97438 * 19 18 17 21 21 N 1.34775 * 120.00269 * 179.97438 * 20 19 18 22 22 O 1.21520 * 119.99808 * 359.97438 * 20 19 18 23 23 N 1.32052 * 119.63533 * 236.08218 * 15 14 13 24 24 C 1.46846 * 111.19354 * 61.74125 * 14 13 12 25 25 H 0.97000 * 119.99593 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.52216 * 302.30640 * 11 9 7 27 27 H 1.09008 * 109.52589 * 62.43972 * 11 9 7 28 28 H 1.09002 * 109.50364 * 177.59479 * 12 11 9 29 29 H 1.09004 * 109.50542 * 297.67614 * 12 11 9 30 30 H 1.09002 * 109.46576 * 180.80499 * 13 12 11 31 31 H 1.08993 * 109.46605 * 60.83641 * 13 12 11 32 32 H 1.08002 * 120.35835 * 0.02740 * 16 15 14 33 33 H 1.07996 * 120.71113 * 180.23198 * 17 16 15 34 34 H 1.07997 * 120.39418 * 179.97438 * 18 17 16 35 35 H 0.97000 * 120.00236 * 359.97438 * 21 20 19 36 36 H 0.97005 * 120.00196 * 180.02562 * 21 20 19 37 37 H 1.09001 * 109.45894 * 58.27957 * 24 14 13 38 38 H 1.09009 * 109.45758 * 178.24324 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4645 -2.1295 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 1 3.8764 -0.6793 0.8876 11 6 4.0222 -0.4767 -1.2537 12 6 5.5521 -0.5337 -1.2769 13 6 6.0038 -1.9954 -1.2404 14 7 5.4906 -2.6375 -0.0234 15 6 5.9902 -3.9278 0.1075 16 6 7.3694 -4.1366 0.1093 17 6 7.8586 -5.4226 0.2453 18 6 6.9534 -6.4677 0.3708 19 6 5.5902 -6.1912 0.3554 20 6 4.6154 -7.2989 0.4880 21 7 3.2932 -7.0382 0.4745 22 8 5.0081 -8.4425 0.6090 23 7 5.1539 -4.9432 0.2230 24 6 4.0223 -2.6367 -0.0016 25 1 -0.4849 0.8401 0.0004 26 1 3.6258 -0.9682 -2.1421 27 1 3.6958 0.5632 -1.2364 28 1 5.9201 -0.0617 -2.1879 29 1 5.9492 -0.0077 -0.4086 30 1 7.0930 -2.0392 -1.2424 31 1 5.6181 -2.5168 -2.1164 32 1 8.0479 -3.3023 0.0101 33 1 8.9221 -5.6101 0.2535 34 1 7.3034 -7.4837 0.4783 35 1 2.9797 -6.1253 0.3783 36 1 2.6549 -7.7635 0.5617 37 1 3.6458 -3.1552 -0.8835 38 1 3.6723 -3.1463 0.8962 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166742462.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:04 Heat of formation + Delta-G solvation = -15.921761 kcal Electronic energy + Delta-G solvation = -21296.744714 eV Core-core repulsion = 18138.040183 eV Total energy + Delta-G solvation = -3158.704531 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.92823 -40.45566 -39.11649 -35.73934 -34.92865 -34.09407 -33.32814 -31.98982 -30.83597 -27.20376 -25.95697 -25.62579 -23.12233 -23.08869 -21.66471 -20.58991 -19.35952 -18.79077 -18.18193 -17.72793 -16.93847 -16.67499 -16.38737 -16.20631 -15.66345 -15.51653 -15.17228 -15.09751 -14.78805 -14.22174 -14.13443 -14.00365 -13.75619 -13.07454 -12.92622 -12.77439 -12.32868 -11.96899 -11.76792 -11.70701 -11.51019 -11.14197 -10.96573 -10.92449 -10.83082 -10.70711 -10.60501 -10.47450 -9.08956 -8.28326 -6.32164 -0.34101 0.28125 1.31750 1.38815 1.49257 1.64868 2.33666 2.34716 2.56361 2.88274 3.07585 3.26694 3.89978 3.94404 4.03548 4.09058 4.13562 4.19659 4.33874 4.42375 4.55290 4.58785 4.73457 4.79511 4.88208 4.99172 5.00554 5.11687 5.17787 5.20351 5.39493 5.51807 5.58653 5.68692 5.73599 5.87133 6.21796 6.22403 6.31820 6.73768 6.85864 7.16461 7.33285 8.88391 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022513 B = 0.005296 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.412866 B = 5286.161370 C = 6355.652302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.013 3.987 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.303 1.303 6 H -0.245 1.245 7 C -0.517 4.517 8 H 0.033 0.967 9 C 0.017 3.983 10 H 0.026 0.974 11 C -0.127 4.127 12 C -0.114 4.114 13 C 0.065 3.935 14 N -0.482 5.482 15 C 0.296 3.704 16 C -0.154 4.154 17 C -0.047 4.047 18 C -0.144 4.144 19 C 0.073 3.927 20 C 0.576 3.424 21 N -0.823 5.823 22 O -0.573 6.573 23 N -0.518 5.518 24 C 0.107 3.893 25 H 0.265 0.735 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.040 0.960 32 H 0.172 0.828 33 H 0.187 0.813 34 H 0.153 0.847 35 H 0.416 0.584 36 H 0.413 0.587 37 H 0.029 0.971 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.684 -6.863 -2.321 20.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.231 1.231 6 H -0.169 1.169 7 C -0.555 4.555 8 H 0.052 0.948 9 C -0.003 4.003 10 H 0.044 0.956 11 C -0.164 4.164 12 C -0.152 4.152 13 C -0.060 4.060 14 N -0.199 5.199 15 C 0.062 3.938 16 C -0.177 4.177 17 C -0.073 4.073 18 C -0.167 4.167 19 C -0.065 4.065 20 C 0.360 3.640 21 N -0.385 5.385 22 O -0.453 6.453 23 N -0.236 5.236 24 C -0.020 4.020 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.134 0.866 31 H 0.058 0.942 32 H 0.189 0.811 33 H 0.204 0.796 34 H 0.171 0.829 35 H 0.247 0.753 36 H 0.245 0.755 37 H 0.048 0.952 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 18.155 -6.948 -1.888 19.531 hybrid contribution -0.831 0.315 -0.349 0.955 sum 17.324 -6.633 -2.237 18.685 Atomic orbital electron populations 1.70052 1.08265 1.27968 1.52820 1.25847 0.95378 1.02998 0.94181 0.85811 0.79180 0.78509 0.78741 1.19003 1.23088 1.16856 1.21260 0.91255 0.93017 1.50012 0.94849 1.19150 0.93302 0.93131 0.94669 0.95604 1.21971 0.96129 0.99114 0.99205 1.21677 0.94476 0.95582 1.03461 1.22350 1.01493 0.94555 0.87590 1.59214 1.10819 1.12420 1.37445 1.20231 0.91227 0.87757 0.94612 1.22146 0.93495 0.99938 1.02080 1.21894 1.02078 0.90288 0.92992 1.22181 0.91907 1.02393 1.00183 1.20876 0.93584 0.90153 1.01904 1.18126 0.83450 0.87104 0.75339 1.43660 1.06455 1.14624 1.73737 1.90772 1.80037 1.22184 1.52265 1.67416 1.40833 0.99229 1.16089 1.21578 0.83363 0.96962 1.00127 0.92636 0.93084 0.94333 0.88612 0.90947 0.86564 0.94186 0.81102 0.79584 0.82894 0.75347 0.75473 0.95249 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.08 13.96 21.45 0.30 -58.78 16 2 C 0.01 0.74 5.45 84.66 0.46 1.20 16 3 Si 0.95 44.16 24.36 68.60 1.67 45.83 16 4 H -0.26 -11.53 6.89 99.48 0.69 -10.84 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.24 -10.51 6.53 99.48 0.65 -9.86 16 7 C -0.52 -28.99 9.14 25.60 0.23 -28.76 16 8 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 9 C 0.02 0.76 1.85 -11.49 -0.02 0.73 16 10 H 0.03 1.21 7.20 -2.39 -0.02 1.20 16 11 C -0.13 -4.90 4.74 30.68 0.15 -4.76 16 12 C -0.11 -3.15 6.09 30.65 0.19 -2.96 16 13 C 0.07 1.63 5.25 86.33 0.45 2.08 16 14 N -0.48 -14.97 4.68 -701.95 -3.28 -18.26 16 15 C 0.30 8.33 6.41 133.26 0.85 9.18 16 16 C -0.15 -2.96 9.18 22.58 0.21 -2.75 16 17 C -0.05 -0.75 10.16 22.42 0.23 -0.52 16 18 C -0.14 -3.16 9.63 22.62 0.22 -2.94 16 19 C 0.07 2.05 6.74 41.83 0.28 2.33 16 20 C 0.58 16.93 8.08 86.88 0.70 17.63 16 21 N -0.82 -20.61 8.86 -175.40 -1.55 -22.16 16 22 O -0.57 -19.16 17.15 -3.78 -0.06 -19.23 16 23 N -0.52 -15.95 7.86 -182.38 -1.43 -17.38 16 24 C 0.11 4.22 3.87 86.32 0.33 4.55 16 25 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.04 1.57 3.37 -2.38 -0.01 1.57 16 28 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.12 1.96 6.66 -2.39 -0.02 1.95 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.17 2.21 7.14 -2.91 -0.02 2.19 16 33 H 0.19 1.30 8.06 -2.91 -0.02 1.28 16 34 H 0.15 3.03 7.63 -2.91 -0.02 3.01 16 35 H 0.42 10.84 8.16 -92.71 -0.76 10.09 16 36 H 0.41 8.45 8.93 -92.70 -0.83 7.62 16 37 H 0.03 1.22 8.11 -2.39 -0.02 1.20 16 38 H 0.06 2.52 7.71 -2.38 -0.02 2.50 16 Total: -1.00 -72.18 305.80 -0.64 -72.82 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -0.56 Total: 22.15 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 4.28 Total: -4.99 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -5.97 Total: -116.58 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.06 Total: -19.23 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.67 Total: 45.83 kcal Total: -72.18 -0.64 -72.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742462.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.899 kcal (2) G-P(sol) polarization free energy of solvation -72.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds