Wall clock time and date at job start Mon Mar 30 2020 02:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00044 * 2 1 4 4 H 1.48495 * 109.46951 * 240.00070 * 3 2 1 5 5 H 1.48497 * 109.47255 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47130 * 119.99910 * 3 2 1 7 7 C 1.37881 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99852 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99818 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.50469 * 299.99718 * 9 7 2 11 11 C 1.53116 * 109.53480 * 60.09632 * 9 7 2 12 12 C 1.53121 * 109.15919 * 177.61205 * 11 9 7 13 13 C 1.53038 * 109.28145 * 302.34666 * 12 11 9 14 14 N 1.46852 * 109.51991 * 59.17795 * 13 12 11 15 15 C 1.38984 * 110.99697 * 174.16220 * 14 13 12 16 16 C 1.39497 * 119.63878 * 303.93463 * 15 14 13 17 17 C 1.38246 * 119.29067 * 179.77263 * 16 15 14 18 18 C 1.38839 * 118.58200 * 0.49617 * 17 16 15 19 19 C 1.39096 * 119.22815 * 359.74767 * 18 17 16 20 20 C 1.48152 * 119.68402 * 179.97438 * 19 18 17 21 21 N 1.34769 * 120.00484 * 180.02562 * 20 19 18 22 22 O 1.21522 * 119.99510 * 0.02562 * 20 19 18 23 23 N 1.32052 * 119.63363 * 124.20964 * 15 14 13 24 24 C 1.46851 * 111.19904 * 298.25890 * 14 13 12 25 25 H 0.97001 * 119.99543 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.52585 * 297.51999 * 11 9 7 27 27 H 1.09000 * 109.52333 * 57.70891 * 11 9 7 28 28 H 1.09004 * 109.50344 * 182.40461 * 12 11 9 29 29 H 1.09005 * 109.50316 * 62.29110 * 12 11 9 30 30 H 1.08996 * 109.46179 * 299.16359 * 13 12 11 31 31 H 1.09000 * 109.46642 * 179.19034 * 13 12 11 32 32 H 1.07994 * 120.35372 * 0.02562 * 16 15 14 33 33 H 1.07999 * 120.70980 * 180.26849 * 17 16 15 34 34 H 1.08003 * 120.38643 * 179.72757 * 18 17 16 35 35 H 0.97005 * 120.00150 * 359.97438 * 21 20 19 36 36 H 0.96999 * 120.00130 * 180.02562 * 21 20 19 37 37 H 1.08999 * 109.46045 * 301.72942 * 24 14 13 38 38 H 1.08998 * 109.45058 * 181.75654 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6238 -2.5573 0.8901 11 6 0.3725 -2.5831 -1.2507 12 6 -0.3432 -3.9366 -1.2724 13 6 0.6968 -5.0587 -1.2369 14 7 1.5111 -4.9348 -0.0211 15 6 2.3789 -6.0126 0.1091 16 6 1.8696 -7.3112 0.1179 17 6 2.7397 -8.3781 0.2431 18 6 4.0977 -8.1168 0.3667 19 6 4.5393 -6.7979 0.3556 20 6 5.9861 -6.5074 0.4875 21 7 6.4210 -5.2319 0.4781 22 8 6.7806 -7.4195 0.6040 23 7 3.6760 -5.7957 0.2285 24 6 2.2448 -3.6629 -0.0008 25 1 -0.4849 0.8401 0.0004 26 1 -0.3654 -1.7811 -1.2322 27 1 0.9950 -2.4860 -2.1401 28 1 -0.9372 -4.0196 -2.1826 29 1 -0.9955 -4.0173 -0.4028 30 1 1.3400 -4.9857 -2.1138 31 1 0.1901 -6.0238 -1.2377 32 1 0.8073 -7.4814 0.0239 33 1 2.3707 -9.3931 0.2483 34 1 4.8029 -8.9282 0.4706 35 1 5.7868 -4.5038 0.3847 36 1 7.3683 -5.0418 0.5640 37 1 2.8808 -3.5964 -0.8836 38 1 2.8623 -3.6143 0.8961 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166742463.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:07 Heat of formation + Delta-G solvation = -0.059139 kcal Electronic energy + Delta-G solvation = -21221.872325 eV Core-core repulsion = 18063.855648 eV Total energy + Delta-G solvation = -3158.016676 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.75563 -39.17191 -37.66299 -34.00798 -33.83528 -32.47719 -31.88625 -30.08290 -29.38029 -25.45067 -24.54435 -24.14357 -21.84911 -21.62904 -20.48514 -18.81585 -18.15231 -17.09133 -16.76205 -16.18401 -15.58774 -15.39785 -15.08987 -14.55644 -14.33285 -14.12464 -13.80765 -13.43059 -13.07728 -12.69321 -12.61816 -12.46227 -11.99979 -11.88834 -10.98265 -10.88046 -10.75608 -10.47957 -10.25286 -10.01466 -9.96669 -9.78299 -9.68240 -9.47281 -9.44808 -9.18090 -8.77973 -8.35456 -7.79531 -6.03246 -4.09353 0.71956 1.30888 2.75852 3.29354 3.34465 3.36411 3.39577 3.75969 4.01006 4.36287 4.47891 4.86185 5.07529 5.10703 5.23863 5.28425 5.45904 5.53393 5.55802 5.81950 5.88578 6.06037 6.15581 6.30662 6.35878 6.47911 6.51043 6.65318 6.71722 6.84025 6.94965 7.17968 7.29934 7.36770 7.61552 7.69155 7.94387 7.97514 8.09271 8.24556 8.39726 8.93731 9.55271 11.03047 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019311 B = 0.005285 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.585600 B = 5297.048518 C = 6594.614463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.051 3.949 10 H 0.034 0.966 11 C -0.114 4.114 12 C -0.119 4.119 13 C 0.067 3.933 14 N -0.474 5.474 15 C 0.326 3.674 16 C -0.168 4.168 17 C -0.063 4.063 18 C -0.152 4.152 19 C 0.098 3.902 20 C 0.581 3.419 21 N -0.833 5.833 22 O -0.546 6.546 23 N -0.495 5.495 24 C 0.078 3.922 25 H 0.261 0.739 26 H 0.094 0.906 27 H 0.033 0.967 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.416 0.584 36 H 0.403 0.597 37 H 0.037 0.963 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.362 -12.841 -1.682 13.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.032 3.968 10 H 0.052 0.948 11 C -0.152 4.152 12 C -0.157 4.157 13 C -0.058 4.058 14 N -0.190 5.190 15 C 0.091 3.909 16 C -0.192 4.192 17 C -0.089 4.089 18 C -0.175 4.175 19 C -0.041 4.041 20 C 0.364 3.636 21 N -0.396 5.396 22 O -0.423 6.423 23 N -0.213 5.213 24 C -0.048 4.048 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.247 0.753 36 H 0.233 0.767 37 H 0.056 0.944 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.526 -12.466 -1.242 13.015 hybrid contribution 0.620 0.583 -0.486 0.980 sum 4.146 -11.884 -1.729 12.704 Atomic orbital electron populations 1.69870 1.05861 1.26546 1.50453 1.24922 0.94833 0.98977 0.95010 0.86670 0.79612 0.83180 0.78588 1.20342 1.21323 1.20280 1.21037 0.92858 0.90354 1.51013 0.92681 1.18756 0.92649 0.90541 0.94861 0.94769 1.21714 1.00215 0.94597 0.98684 1.21740 0.96925 0.96126 1.00939 1.22236 0.95379 1.00020 0.88182 1.59175 1.21267 1.02601 1.35983 1.20101 0.87291 0.91156 0.92399 1.21837 1.01468 0.91802 1.04045 1.21405 0.92539 0.99454 0.95477 1.21860 0.96548 0.97007 1.02071 1.20794 0.93071 0.90145 1.00078 1.17940 0.86887 0.83185 0.75580 1.43697 1.12701 1.08212 1.75011 1.90796 1.55604 1.45294 1.50597 1.67576 1.02821 1.35279 1.15604 1.22310 0.96090 0.85554 1.00823 0.92939 0.88734 0.94801 0.92623 0.91682 0.94222 0.91322 0.84205 0.84236 0.83986 0.75293 0.76652 0.94425 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.46 11.36 55.43 0.63 -23.83 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.48 8.56 -34.44 -0.29 -13.77 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.05 1.21 2.26 -91.69 -0.21 1.00 16 10 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 11 C -0.11 -2.52 5.03 -26.61 -0.13 -2.65 16 12 C -0.12 -2.10 6.09 -26.65 -0.16 -2.26 16 13 C 0.07 1.07 5.25 -3.83 -0.02 1.05 16 14 N -0.47 -8.41 4.68 -173.22 -0.81 -9.22 16 15 C 0.33 5.24 6.40 -155.20 -0.99 4.24 16 16 C -0.17 -2.16 9.19 -39.11 -0.36 -2.52 16 17 C -0.06 -0.70 10.16 -39.36 -0.40 -1.10 16 18 C -0.15 -1.96 9.63 -39.04 -0.38 -2.33 16 19 C 0.10 1.47 6.74 -83.02 -0.56 0.91 16 20 C 0.58 8.59 8.08 -12.19 -0.10 8.49 16 21 N -0.83 -10.05 8.86 30.60 0.27 -9.78 16 22 O -0.55 -9.21 17.15 5.35 0.09 -9.12 16 23 N -0.50 -8.04 7.85 -8.99 -0.07 -8.11 16 24 C 0.08 1.59 3.87 -3.83 -0.01 1.57 16 25 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 26 H 0.09 2.36 6.16 -51.93 -0.32 2.04 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.89 6.68 -51.93 -0.35 0.55 16 32 H 0.14 1.52 7.15 -52.49 -0.38 1.14 16 33 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.14 1.66 7.63 -52.48 -0.40 1.26 16 35 H 0.42 5.07 8.16 -40.82 -0.33 4.74 16 36 H 0.40 3.91 8.93 -40.82 -0.36 3.54 16 37 H 0.04 0.78 8.11 -51.93 -0.42 0.36 16 38 H 0.07 1.51 7.70 -51.93 -0.40 1.11 16 LS Contribution 312.67 15.07 4.71 4.71 Total: -1.00 -29.56 312.67 -8.95 -38.52 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.04 Total: 6.99 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -3.71 Total: -5.77 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.02 Total: -50.94 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.56 -8.95 -38.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742463.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.457 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds