Wall clock time and date at job start Mon Mar 30 2020 02:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00044 * 2 1 4 4 H 1.48495 * 109.46951 * 240.00070 * 3 2 1 5 5 H 1.48497 * 109.47255 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47130 * 119.99910 * 3 2 1 7 7 C 1.37881 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99852 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99818 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.50469 * 299.99718 * 9 7 2 11 11 C 1.53116 * 109.53480 * 60.09632 * 9 7 2 12 12 C 1.53121 * 109.15919 * 177.61205 * 11 9 7 13 13 C 1.53038 * 109.28145 * 302.34666 * 12 11 9 14 14 N 1.46852 * 109.51991 * 59.17795 * 13 12 11 15 15 C 1.38984 * 110.99697 * 174.16220 * 14 13 12 16 16 C 1.39497 * 119.63878 * 303.93463 * 15 14 13 17 17 C 1.38246 * 119.29067 * 179.77263 * 16 15 14 18 18 C 1.38839 * 118.58200 * 0.49617 * 17 16 15 19 19 C 1.39096 * 119.22815 * 359.74767 * 18 17 16 20 20 C 1.48152 * 119.68402 * 179.97438 * 19 18 17 21 21 N 1.34769 * 120.00484 * 180.02562 * 20 19 18 22 22 O 1.21522 * 119.99510 * 0.02562 * 20 19 18 23 23 N 1.32052 * 119.63363 * 124.20964 * 15 14 13 24 24 C 1.46851 * 111.19904 * 298.25890 * 14 13 12 25 25 H 0.97001 * 119.99543 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.52585 * 297.51999 * 11 9 7 27 27 H 1.09000 * 109.52333 * 57.70891 * 11 9 7 28 28 H 1.09004 * 109.50344 * 182.40461 * 12 11 9 29 29 H 1.09005 * 109.50316 * 62.29110 * 12 11 9 30 30 H 1.08996 * 109.46179 * 299.16359 * 13 12 11 31 31 H 1.09000 * 109.46642 * 179.19034 * 13 12 11 32 32 H 1.07994 * 120.35372 * 0.02562 * 16 15 14 33 33 H 1.07999 * 120.70980 * 180.26849 * 17 16 15 34 34 H 1.08003 * 120.38643 * 179.72757 * 18 17 16 35 35 H 0.97005 * 120.00150 * 359.97438 * 21 20 19 36 36 H 0.96999 * 120.00130 * 180.02562 * 21 20 19 37 37 H 1.08999 * 109.46045 * 301.72942 * 24 14 13 38 38 H 1.08998 * 109.45058 * 181.75654 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6238 -2.5573 0.8901 11 6 0.3725 -2.5831 -1.2507 12 6 -0.3432 -3.9366 -1.2724 13 6 0.6968 -5.0587 -1.2369 14 7 1.5111 -4.9348 -0.0211 15 6 2.3789 -6.0126 0.1091 16 6 1.8696 -7.3112 0.1179 17 6 2.7397 -8.3781 0.2431 18 6 4.0977 -8.1168 0.3667 19 6 4.5393 -6.7979 0.3556 20 6 5.9861 -6.5074 0.4875 21 7 6.4210 -5.2319 0.4781 22 8 6.7806 -7.4195 0.6040 23 7 3.6760 -5.7957 0.2285 24 6 2.2448 -3.6629 -0.0008 25 1 -0.4849 0.8401 0.0004 26 1 -0.3654 -1.7811 -1.2322 27 1 0.9950 -2.4860 -2.1401 28 1 -0.9372 -4.0196 -2.1826 29 1 -0.9955 -4.0173 -0.4028 30 1 1.3400 -4.9857 -2.1138 31 1 0.1901 -6.0238 -1.2377 32 1 0.8073 -7.4814 0.0239 33 1 2.3707 -9.3931 0.2483 34 1 4.8029 -8.9282 0.4706 35 1 5.7868 -4.5038 0.3847 36 1 7.3683 -5.0418 0.5640 37 1 2.8808 -3.5964 -0.8836 38 1 2.8623 -3.6143 0.8961 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166742463.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:07 Heat of formation + Delta-G solvation = -20.597224 kcal Electronic energy + Delta-G solvation = -21222.762923 eV Core-core repulsion = 18063.855648 eV Total energy + Delta-G solvation = -3158.907275 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.89561 -40.40282 -39.00177 -35.69807 -34.91844 -33.85272 -33.22265 -31.71830 -30.65155 -27.13925 -25.88540 -25.48578 -23.27521 -22.95361 -21.68096 -20.45613 -19.31512 -18.45407 -18.14068 -17.53499 -16.81506 -16.69759 -16.34597 -16.20823 -15.58225 -15.44734 -15.08071 -14.88362 -14.47783 -14.16615 -14.02722 -13.95247 -13.41017 -13.03838 -12.82911 -12.66638 -12.54421 -11.87066 -11.76947 -11.67484 -11.48461 -11.03611 -10.99276 -10.84979 -10.76345 -10.66222 -10.43814 -10.35063 -9.04872 -8.07249 -6.20319 -0.33125 0.28868 1.43573 1.44091 1.51506 1.65730 2.34269 2.43007 2.61967 2.90350 3.20634 3.30408 3.92301 4.02299 4.10658 4.13013 4.21069 4.29716 4.42929 4.54889 4.60802 4.70171 4.85561 4.94391 4.99797 5.06124 5.14223 5.18939 5.33467 5.42692 5.55694 5.65147 5.69461 5.81182 6.03071 6.16457 6.23266 6.28477 6.40591 6.85512 6.91578 7.18064 7.47299 8.97428 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019311 B = 0.005285 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.585600 B = 5297.048518 C = 6594.614463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.017 3.983 3 Si 0.951 3.049 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.052 0.948 9 C 0.050 3.950 10 H -0.003 1.003 11 C -0.108 4.108 12 C -0.111 4.111 13 C 0.070 3.930 14 N -0.484 5.484 15 C 0.297 3.703 16 C -0.159 4.159 17 C -0.046 4.046 18 C -0.146 4.146 19 C 0.073 3.927 20 C 0.577 3.423 21 N -0.821 5.821 22 O -0.572 6.572 23 N -0.516 5.516 24 C 0.101 3.899 25 H 0.260 0.740 26 H 0.061 0.939 27 H 0.025 0.975 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.037 0.963 31 H 0.109 0.891 32 H 0.167 0.833 33 H 0.186 0.814 34 H 0.154 0.846 35 H 0.416 0.584 36 H 0.413 0.587 37 H 0.028 0.972 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.208 -14.974 -2.176 15.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.182 4.182 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.070 0.930 9 C 0.031 3.969 10 H 0.016 0.984 11 C -0.146 4.146 12 C -0.149 4.149 13 C -0.055 4.055 14 N -0.200 5.200 15 C 0.062 3.938 16 C -0.181 4.181 17 C -0.072 4.072 18 C -0.169 4.169 19 C -0.065 4.065 20 C 0.361 3.639 21 N -0.384 5.384 22 O -0.452 6.452 23 N -0.234 5.234 24 C -0.026 4.026 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.127 0.873 32 H 0.184 0.816 33 H 0.203 0.797 34 H 0.172 0.828 35 H 0.247 0.753 36 H 0.246 0.754 37 H 0.046 0.954 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.397 -14.599 -1.736 15.090 hybrid contribution 0.690 1.187 -0.315 1.408 sum 4.087 -13.413 -2.051 14.171 Atomic orbital electron populations 1.70010 1.07056 1.27113 1.51134 1.25653 0.95622 1.02088 0.94792 0.85722 0.78466 0.79367 0.78744 1.19687 1.21031 1.19857 1.21427 0.93020 0.91936 1.50881 0.92979 1.18664 0.92958 0.91264 0.94031 0.98442 1.21508 0.99223 0.96606 0.97266 1.21630 0.97208 0.94017 1.02022 1.22295 0.94714 1.01008 0.87510 1.59180 1.21743 1.01779 1.37316 1.20267 0.87222 0.91848 0.94424 1.22129 1.03090 0.90454 1.02453 1.21880 0.91195 1.01115 0.93002 1.22172 0.97934 0.96338 1.00406 1.20919 0.92817 0.91002 1.01749 1.18077 0.87020 0.83468 0.75340 1.43627 1.13425 1.07539 1.73776 1.90773 1.56176 1.45995 1.52264 1.67421 1.03411 1.36380 1.16192 1.21786 0.94846 0.86367 0.99597 0.93061 0.92001 0.95645 0.89914 0.92293 0.94472 0.87252 0.81567 0.79652 0.82787 0.75274 0.75403 0.95360 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.83 11.36 21.45 0.24 -51.59 16 2 C 0.02 0.95 5.30 84.66 0.45 1.40 16 3 Si 0.95 42.98 29.54 68.60 2.03 45.01 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.53 -28.97 8.56 25.60 0.22 -28.75 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 9 C 0.05 2.45 2.26 -11.49 -0.03 2.43 16 10 H 0.00 -0.15 8.14 -2.39 -0.02 -0.16 16 11 C -0.11 -4.89 5.03 30.67 0.15 -4.73 16 12 C -0.11 -3.79 6.09 30.65 0.19 -3.61 16 13 C 0.07 2.07 5.25 86.32 0.45 2.52 16 14 N -0.48 -16.72 4.68 -701.93 -3.28 -20.00 16 15 C 0.30 9.03 6.40 133.26 0.85 9.88 16 16 C -0.16 -3.45 9.19 22.58 0.21 -3.24 16 17 C -0.05 -0.82 10.16 22.42 0.23 -0.59 16 18 C -0.15 -3.34 9.63 22.62 0.22 -3.12 16 19 C 0.07 2.10 6.74 41.83 0.28 2.39 16 20 C 0.58 16.81 8.08 86.88 0.70 17.52 16 21 N -0.82 -19.74 8.86 -175.40 -1.55 -21.29 16 22 O -0.57 -19.00 17.15 -3.78 -0.06 -19.06 16 23 N -0.52 -16.42 7.85 -182.37 -1.43 -17.85 16 24 C 0.10 4.21 3.87 86.32 0.33 4.55 16 25 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 26 H 0.06 3.20 6.16 -2.39 -0.01 3.19 16 27 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 2.37 6.68 -2.39 -0.02 2.36 16 32 H 0.17 2.71 7.15 -2.91 -0.02 2.69 16 33 H 0.19 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.15 3.15 7.63 -2.91 -0.02 3.13 16 35 H 0.42 10.29 8.16 -92.70 -0.76 9.53 16 36 H 0.41 7.92 8.93 -92.71 -0.83 7.09 16 37 H 0.03 1.21 8.11 -2.39 -0.02 1.19 16 38 H 0.06 2.51 7.70 -2.39 -0.02 2.49 16 Total: -1.00 -66.59 312.67 -0.29 -66.88 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -0.49 Total: 21.27 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 4.26 Total: -3.36 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -6.03 Total: -110.74 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.06 Total: -19.06 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -66.59 -0.29 -66.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742463.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.281 kcal (2) G-P(sol) polarization free energy of solvation -66.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds