Wall clock time and date at job start Mon Mar 30 2020 02:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86797 * 119.99847 * 2 1 4 4 H 1.48501 * 109.47034 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46896 * 119.99909 * 3 2 1 6 6 H 1.48499 * 109.47184 * 240.00000 * 3 2 1 7 7 C 1.40030 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99412 * 154.59883 * 7 2 1 9 9 C 1.41547 * 119.99933 * 334.60234 * 7 2 1 10 10 C 1.41192 * 120.99435 * 335.33612 * 9 7 2 11 11 C 1.36560 * 119.14445 * 179.72913 * 10 9 7 12 12 N 1.32088 * 121.27099 * 0.55908 * 11 10 9 13 13 C 1.32530 * 122.21353 * 359.71359 * 12 11 10 14 14 N 1.39079 * 119.65656 * 180.02562 * 13 12 11 15 15 C 1.46849 * 111.00116 * 235.76852 * 14 13 12 16 16 C 1.53044 * 109.52634 * 185.83538 * 15 14 13 17 17 C 1.53117 * 109.27550 * 300.82385 * 16 15 14 18 18 C 1.53109 * 109.16377 * 57.65329 * 17 16 15 19 19 H 1.09002 * 109.50897 * 62.28505 * 18 17 16 20 20 C 1.50702 * 109.50330 * 182.40250 * 18 17 16 21 21 N 1.34775 * 120.00094 * 299.80209 * 20 18 17 22 22 O 1.21287 * 120.00038 * 119.80305 * 20 18 17 23 23 C 1.46849 * 111.00101 * 359.97435 * 14 13 12 24 24 C 1.38743 * 120.69065 * 359.97438 * 13 12 11 25 25 H 0.97008 * 119.99985 * 174.60807 * 1 2 3 26 26 H 1.08000 * 120.42314 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.36218 * 180.27544 * 11 10 9 28 28 H 1.09001 * 109.46080 * 305.85383 * 15 14 13 29 29 H 1.09006 * 109.46367 * 65.81980 * 15 14 13 30 30 H 1.08998 * 109.50337 * 180.87579 * 16 15 14 31 31 H 1.09003 * 109.52934 * 60.78437 * 16 15 14 32 32 H 1.08996 * 109.52227 * 297.74429 * 17 16 15 33 33 H 1.09003 * 109.57127 * 177.58902 * 17 16 15 34 34 H 0.97002 * 119.99895 * 0.02562 * 21 20 18 35 35 H 0.97003 * 119.99971 * 179.97438 * 21 20 18 36 36 H 1.08999 * 109.46472 * 294.17977 * 23 14 13 37 37 H 1.09003 * 109.46109 * 54.14724 * 23 14 13 38 38 H 1.08003 * 120.67191 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 1.2763 2.7464 0.0006 5 1 3.0951 1.6964 1.2126 6 1 3.0951 1.6964 -1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0093 -1.2576 -0.4018 9 6 1.4025 -2.3795 0.5247 10 6 0.3727 -2.2943 1.4869 11 6 -0.1884 -3.4443 1.9640 12 7 0.2214 -4.6300 1.5507 13 6 1.1871 -4.7707 0.6541 14 7 1.5765 -6.0452 0.2563 15 6 3.0166 -6.2441 0.4632 16 6 3.4347 -7.5971 -0.1172 17 6 2.6423 -8.7102 0.5738 18 6 1.1449 -8.4531 0.3844 19 1 0.9019 -8.4831 -0.6778 20 6 0.3567 -9.5119 1.1116 21 7 0.5050 -10.8096 0.7795 22 8 -0.4112 -9.1961 1.9958 23 6 0.7932 -7.0754 0.9503 24 6 1.8130 -3.6598 0.1072 25 1 -0.4850 -0.8364 -0.0789 26 1 0.0306 -1.3320 1.8381 27 1 -0.9794 -3.3831 2.6968 28 1 3.5687 -5.4482 -0.0368 29 1 3.2365 -6.2233 1.5306 30 1 4.5007 -7.7512 0.0503 31 1 3.2285 -7.6140 -1.1874 32 1 2.8787 -8.7189 1.6378 33 1 2.9052 -9.6724 0.1344 34 1 1.1193 -11.0622 0.0726 35 1 -0.0021 -11.4911 1.2479 36 1 1.0234 -7.0507 2.0154 37 1 -0.2698 -6.8833 0.8041 38 1 2.5997 -3.7748 -0.6237 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166933128.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:24 Heat of formation + Delta-G solvation = -20.390456 kcal Electronic energy + Delta-G solvation = -21082.190662 eV Core-core repulsion = 17923.292354 eV Total energy + Delta-G solvation = -3158.898309 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.23695 -38.97718 -37.31333 -34.59806 -33.86071 -32.79104 -31.12289 -30.29115 -28.41054 -25.83313 -24.49788 -23.73763 -21.76253 -21.08109 -20.34966 -19.48869 -18.20059 -17.44479 -16.68818 -15.83149 -15.22229 -15.00211 -14.61495 -14.32585 -14.24144 -14.11789 -13.79660 -13.59806 -13.05532 -12.84528 -12.55540 -12.23733 -12.09911 -11.71081 -11.36944 -11.18331 -10.94596 -10.66039 -10.46977 -10.43942 -10.18894 -9.94139 -9.80385 -9.76646 -9.23450 -8.93665 -8.18066 -8.04198 -7.36732 -7.01378 -4.67493 2.62400 2.63922 2.78463 3.12152 3.26918 3.32920 3.40467 3.95714 4.27559 4.59265 4.64211 4.77707 4.87226 5.19331 5.22271 5.42525 5.50503 5.59963 5.66789 5.81868 5.83290 5.90057 6.09726 6.16831 6.33220 6.45412 6.56553 6.67709 6.72019 6.80317 6.92968 7.21263 7.28627 7.39882 7.49603 7.64300 7.78872 8.04435 8.21744 8.34220 8.59980 8.76610 9.50711 9.95524 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.036767 B = 0.004065 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.368898 B = 6885.573625 C = 7467.932389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.040 3.960 3 Si 1.067 2.933 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.078 0.922 9 C 0.125 3.875 10 C -0.279 4.279 11 C 0.123 3.877 12 N -0.605 5.605 13 C 0.313 3.687 14 N -0.479 5.479 15 C 0.059 3.941 16 C -0.114 4.114 17 C -0.110 4.110 18 C -0.111 4.111 19 H 0.104 0.896 20 C 0.523 3.477 21 N -0.859 5.859 22 O -0.535 6.535 23 C 0.095 3.905 24 C -0.286 4.286 25 H 0.301 0.699 26 H 0.111 0.889 27 H 0.121 0.879 28 H 0.085 0.915 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.400 0.600 35 H 0.398 0.602 36 H 0.049 0.951 37 H 0.089 0.911 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.042 -14.487 -1.767 15.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.183 4.183 3 Si 0.890 3.110 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.542 4.542 8 H 0.097 0.903 9 C 0.117 3.883 10 C -0.302 4.302 11 C -0.028 4.028 12 N -0.326 5.326 13 C 0.086 3.914 14 N -0.197 5.197 15 C -0.068 4.068 16 C -0.152 4.152 17 C -0.148 4.148 18 C -0.133 4.133 19 H 0.122 0.878 20 C 0.308 3.692 21 N -0.423 5.423 22 O -0.410 6.410 23 C -0.033 4.033 24 C -0.312 4.312 25 H 0.115 0.885 26 H 0.129 0.871 27 H 0.139 0.861 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.228 0.772 35 H 0.229 0.771 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.846 -13.278 -1.323 14.197 hybrid contribution 0.703 -1.347 0.130 1.525 sum 5.549 -14.625 -1.193 15.688 Atomic orbital electron populations 1.70424 1.08307 1.34512 1.27740 1.27097 0.95644 1.04428 0.91136 0.83607 0.75658 0.73623 0.78071 1.19749 1.19904 1.20014 1.20576 1.03184 0.93793 1.36689 0.90345 1.17723 0.89574 0.92356 0.88624 1.21725 1.05645 0.98431 1.04417 1.21438 0.96792 0.87888 0.96670 1.67271 1.19679 1.27560 1.18042 1.19219 0.92886 0.88108 0.91181 1.59159 1.04279 1.01161 1.55142 1.22193 0.87483 0.97787 0.99328 1.21603 0.99127 0.93585 1.00895 1.21579 0.92830 0.98930 1.01467 1.21454 0.95444 0.94765 1.01639 0.87776 1.20678 0.81981 0.83677 0.82913 1.43896 1.48325 1.08119 1.41994 1.90778 1.37370 1.81699 1.31173 1.21510 0.99379 0.86479 0.95933 1.21184 1.09544 0.91632 1.08824 0.88523 0.87086 0.86114 0.89696 0.94514 0.90955 0.90697 0.91629 0.91522 0.77225 0.77143 0.93300 0.89230 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.69 12.35 55.55 0.69 -20.00 16 2 C 0.04 1.01 4.99 -17.34 -0.09 0.92 16 3 Si 1.07 21.07 30.00 -169.99 -5.10 15.97 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.51 -13.45 9.05 -37.65 -0.34 -13.79 16 8 H 0.08 1.99 7.96 -52.49 -0.42 1.57 16 9 C 0.13 3.34 5.33 -106.56 -0.57 2.77 16 10 C -0.28 -7.20 7.98 -39.07 -0.31 -7.51 16 11 C 0.12 3.02 11.10 -18.05 -0.20 2.82 16 12 N -0.61 -14.95 8.65 -12.82 -0.11 -15.06 16 13 C 0.31 7.39 6.41 -154.98 -0.99 6.40 16 14 N -0.48 -9.25 4.68 -173.29 -0.81 -10.06 16 15 C 0.06 0.94 5.25 -3.83 -0.02 0.92 16 16 C -0.11 -1.29 6.09 -26.65 -0.16 -1.46 16 17 C -0.11 -1.15 5.16 -26.61 -0.14 -1.29 16 18 C -0.11 -1.45 2.69 -91.70 -0.25 -1.70 16 19 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 20 C 0.52 6.94 7.43 -10.99 -0.08 6.86 16 21 N -0.86 -6.98 8.78 31.22 0.27 -6.70 16 22 O -0.53 -9.77 16.82 5.55 0.09 -9.68 16 23 C 0.09 1.73 3.23 -3.83 -0.01 1.72 16 24 C -0.29 -7.12 8.98 -38.44 -0.35 -7.47 16 25 H 0.30 8.20 6.63 -40.82 -0.27 7.93 16 26 H 0.11 2.90 6.54 -52.49 -0.34 2.56 16 27 H 0.12 2.63 8.06 -52.49 -0.42 2.20 16 28 H 0.08 1.39 6.67 -51.93 -0.35 1.05 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.48 7.65 -51.93 -0.40 0.08 16 34 H 0.40 1.98 8.31 -40.82 -0.34 1.64 16 35 H 0.40 2.80 8.93 -40.82 -0.36 2.44 16 36 H 0.05 0.99 8.05 -51.93 -0.42 0.58 16 37 H 0.09 1.88 7.68 -51.93 -0.40 1.48 16 38 H 0.10 2.42 7.15 -52.48 -0.38 2.04 16 LS Contribution 310.62 15.07 4.68 4.68 Total: -1.00 -31.82 310.62 -8.80 -40.62 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -5.00 Total: 11.04 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -3.51 Total: -10.80 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.04 Total: -51.83 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.10 Total: 15.97 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.82 -8.80 -40.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166933128.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.230 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds